Translocation by multi-subunit RNA polymerases.
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[1] B. Coulombe,et al. Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II. , 2010, Protein expression and purification.
[2] M. Kashlev,et al. Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase. , 2009, Methods.
[3] J. Svejstrup,et al. Stability, Flexibility, and Dynamic Interactions of Colliding RNA Polymerase II Elongation Complexes , 2009, Molecular cell.
[4] Robert Landick,et al. Transcriptional pausing without backtracking , 2009, Proceedings of the National Academy of Sciences.
[5] M. Kashlev,et al. Mechanism of sequence-specific pausing of bacterial RNA polymerase , 2009, Proceedings of the National Academy of Sciences.
[6] Julio O. Ortiz,et al. A movie of the RNA polymerase nucleotide addition cycle. , 2009, Current opinion in structural biology.
[7] M. Levitt,et al. Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution , 2009, Science.
[8] J. Strathern,et al. Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II*♦ , 2009, The Journal of Biological Chemistry.
[9] Simone C. Wiesler,et al. Bridge helix and trigger loop perturbations generate superactive RNA polymerases , 2008, Journal of biology.
[10] M. Kashlev,et al. DNA sequences in gal operon override transcription elongation blocks. , 2008, Journal of molecular biology.
[11] Nancy R Forde,et al. Thermal probing of E. coli RNA polymerase off-pathway mechanisms. , 2008, Journal of molecular biology.
[12] J. Register,et al. Rapid kinetic analysis of transcription elongation by Escherichia coli RNA polymerase. , 2008, Journal of molecular biology.
[13] P. Cramer,et al. Structural basis of transcription inhibition by α-amanitin and implications for RNA polymerase II translocation , 2008, Nature Structural &Molecular Biology.
[14] J. Strathern,et al. Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. , 2008, Molecular cell.
[15] Craig D. Kaplan,et al. The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. , 2008, Molecular cell.
[16] W. Greenleaf,et al. Single-molecule studies of RNA polymerase: motoring along. , 2008, Annual review of biochemistry.
[17] P. Cramer,et al. Structure–function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement , 2007, Nucleic acids research.
[18] Zachary F Burton,et al. A Tunable Ratchet Driving Human RNA Polymerase II Translocation Adjusted by Accurately Templated Nucleoside Triphosphates Loaded at Downstream Sites and by Elongation Factors* , 2007, Journal of Biological Chemistry.
[19] Robert Landick,et al. A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing. , 2007, Molecular cell.
[20] P. Cramer,et al. Multisubunit RNA Polymerases Melt Only a Single DNA Base Pair Downstream of the Active Site* , 2007, Journal of Biological Chemistry.
[21] Tahir H. Tahirov,et al. Structural basis for transcription elongation by bacterial RNA polymerase , 2007, Nature.
[22] Jonathan Tennyson,et al. Water vapour in the atmosphere of a transiting extrasolar planet , 2007, Nature.
[23] R. Landick,et al. Direct Versus Limited-step Reconstitution Reveals Key Features of an RNA Hairpin-stabilized Paused Transcription Complex* , 2007, Journal of Biological Chemistry.
[24] Carlos Bustamante,et al. Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner , 2007, Nature.
[25] P. Cramer,et al. CPD Damage Recognition by Transcribing RNA Polymerase II , 2007, Science.
[26] Michelle D. Wang,et al. Mechanochemical kinetics of transcription elongation. , 2007, Physical review letters.
[27] B. Marchand,et al. The Pyrophosphate Analogue Foscarnet Traps the Pre-translocational State of HIV-1 Reverse Transcriptase in a Brownian Ratchet Model of Polymerase Translocation* , 2007, Journal of Biological Chemistry.
[28] Irina Artsimovitch,et al. Structural basis for substrate loading in bacterial RNA polymerase , 2007, Nature.
[29] R. Landick. The regulatory roles and mechanism of transcriptional pausing. , 2006, Biochemical Society transactions.
[30] Craig D. Kaplan,et al. Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis , 2006, Cell.
[31] Smita S Patel,et al. Transient State Kinetics of Transcription Elongation by T7 RNA Polymerase*♦ , 2006, Journal of Biological Chemistry.
[32] T. Tahirov,et al. Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations , 2006, Nucleic acids research.
[33] Steven M. Block,et al. Sequence-Resolved Detection of Pausing by Single RNA Polymerase Molecules , 2006, Cell.
[34] Michelle D. Wang,et al. Single-molecule analysis of RNA polymerase transcription. , 2006, Annual review of biophysics and biomolecular structure.
[35] R. Sousa,et al. Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet. , 2006, Journal of molecular biology.
[36] Anirvan M. Sengupta,et al. Thermodynamic and kinetic modeling of transcriptional pausing. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[37] P. Cramer,et al. Structure of an RNA polymerase II–RNA inhibitor complex elucidates transcription regulation by noncoding RNAs , 2006, Nature Structural &Molecular Biology.
[38] W. Greenleaf,et al. Direct observation of base-pair stepping by RNA polymerase , 2005, Nature.
[39] A. D. Clark,et al. Inhibition of Bacterial RNA Polymerase by Streptolydigin: Stabilization of a Straight-Bridge-Helix Active-Center Conformation , 2005, Cell.
[40] Michael Feig,et al. NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases. , 2005, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[41] Michael Feig,et al. Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II. , 2005, Molecular cell.
[42] Zachary F. Burton,et al. Human RNA Polymerase II Elongation in Slow Motion: Role of the TFIIF RAP74 α1 Helix in Nucleoside Triphosphate-Driven Translocation , 2005, Molecular and Cellular Biology.
[43] Arkady Mustaev,et al. A Ratchet Mechanism of Transcription Elongation and Its Control , 2005, Cell.
[44] P. Cramer,et al. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. , 2004, Molecular cell.
[45] M. Levitt,et al. Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[46] Michelle D. Wang,et al. A single-molecule technique to study sequence-dependent transcription pausing. , 2004, Biophysical journal.
[47] Michelle D. Wang,et al. Sequence-dependent kinetic model for transcription elongation by RNA polymerase. , 2004, Journal of molecular biology.
[48] D. Bushnell,et al. Structural Basis of Transcription Nucleotide Selection by Rotation in the RNA Polymerase II Active Center , 2004, Cell.
[49] Chunfen Zhang,et al. Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism. , 2004, Journal of molecular biology.
[50] Y. Nedialkov,et al. α-Amanitin Blocks Translocation by Human RNA Polymerase II* , 2004, Journal of Biological Chemistry.
[51] J. Arnold,et al. Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+. , 2004, Biochemistry.
[52] D. Luse,et al. Characterization of a novel RNA polymerase II arrest site which lacks a weak 3' RNA-DNA hybrid. , 2004, Nucleic acids research.
[53] D. Bushnell,et al. Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II , 2004, Science.
[54] Thomas A Steitz,et al. The Structural Mechanism of Translocation and Helicase Activity in T7 RNA Polymerase , 2004, Cell.
[55] Shigeyuki Yokoyama,et al. Structural Basis for Substrate Selection by T7 RNA Polymerase , 2004, Cell.
[56] J. Arnold,et al. Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mn2+. , 2004, Biochemistry.
[57] Y. Nedialkov,et al. Alpha-amanitin blocks translocation by human RNA polymerase II. , 2004, The Journal of biological chemistry.
[58] Honggao Yan,et al. Combinatorial Control of Human RNA Polymerase II (RNAP II) Pausing and Transcript Cleavage by Transcription Factor IIF, Hepatitis δ Antigen, and Stimulatory Factor II* , 2003, Journal of Biological Chemistry.
[59] Elio A. Abbondanzieri,et al. Ubiquitous Transcriptional Pausing Is Independent of RNA Polymerase Backtracking , 2003, Cell.
[60] Robert Landick,et al. The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. , 2003, Molecular cell.
[61] D. Erie,et al. Downstream DNA Sequence Effects on Transcription Elongation , 2003, Journal of Biological Chemistry.
[62] B. Marchand,et al. Site-specific Footprinting Reveals Differences in the Translocation Status of HIV-1 Reverse Transcriptase , 2003, Journal of Biological Chemistry.
[63] Hiroshi Handa,et al. NTP-driven Translocation by Human RNA Polymerase II* , 2003, The Journal of Biological Chemistry.
[64] V. Markovtsov,et al. Swing-gate model of nucleotide entry into the RNA polymerase active center. , 2002, Molecular cell.
[65] S. Yokoyama,et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution , 2002, Nature.
[66] R. Landick,et al. Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II. , 2001, Journal of molecular biology.
[67] D. Erie,et al. Allosteric Binding of Nucleoside Triphosphates to RNA Polymerase Regulates Transcription Elongation , 2001, Cell.
[68] R. Landick,et al. Allosteric Control of RNA Polymerase by a Site That Contacts Nascent RNA Hairpins , 2001, Science.
[69] P. Cramer,et al. Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution , 2001, Science.
[70] P. Cramer,et al. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.
[71] M. Hampsey,et al. Functional Interaction between Ssu72 and the Rpb2 Subunit of RNA Polymerase II in Saccharomyces cerevisiae , 2000, Molecular and Cellular Biology.
[72] R. Landick,et al. Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[73] C. Bustamante,et al. Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase. , 2000, Science.
[74] M. Kashlev,et al. The 8-Nucleotide-long RNA:DNA Hybrid Is a Primary Stability Determinant of the RNA Polymerase II Elongation Complex* , 2000, The Journal of Biological Chemistry.
[75] K. Severinov,et al. Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 Å Resolution , 1999, Cell.
[76] Grant J. Jensen,et al. Yeast RNA Polymerase II at 5 Å Resolution , 1999, Cell.
[77] P. Hanawalt,et al. Effect of DNA lesions on transcription elongation. , 1999, Biochimie.
[78] Michelle D. Wang,et al. Force and velocity measured for single molecules of RNA polymerase. , 1998, Science.
[79] M. Kashlev,et al. Crucial role of the RNA:DNA hybrid in the processivity of transcription. , 1998, Molecular cell.
[80] Robert Landick,et al. RNA Polymerase as a Molecular Motor , 1998, Cell.
[81] F. Holstege,et al. Three transitions in the RNA polymerase II transcription complex during initiation , 1997, The EMBO journal.
[82] C. Carles,et al. Selective Targeting and Inhibition of Yeast RNA Polymerase II by RNA Aptamers* , 1997, The Journal of Biological Chemistry.
[83] M. Kashlev,et al. RNA Polymerase Switches between Inactivated and Activated States By Translocating Back and Forth along the DNA and the RNA* , 1997, The Journal of Biological Chemistry.
[84] M. Kashlev,et al. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[85] R. Sousa,et al. A model for the mechanism of polymerase translocation. , 1997, Journal of molecular biology.
[86] D. K. Hawley,et al. Promoter Proximal Sequences Modulate RNA Polymerase II Elongation by a Novel Mechanism , 1996, Cell.
[87] Steven M. Block,et al. Transcription Against an Applied Force , 1995, Science.
[88] P. Thuriaux,et al. Transcription in archaea: similarity to that in eucarya. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[89] L. Finzi,et al. Single-molecule kinetic studies on DNA transcription and transcriptional regulation. , 1995, Biophysical journal.
[90] H. Heumann,et al. Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble". , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[91] J. Capone,et al. RNA chain elongation and termination by mammalian RNA polymerase III. Analysis of tRNA gene transcription by imposing a reversible factor-mediated block to elongation using a sequence-specific DNA binding protein. , 1994, Journal of molecular biology.
[92] C. Chan,et al. GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. , 1994, The Journal of biological chemistry.
[93] C. Chan,et al. Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. , 1993, Journal of molecular biology.
[94] P. V. von Hippel,et al. The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. , 1992, Annual review of biophysics and biomolecular structure.
[95] P. V. von Hippel,et al. Transcript elongation and termination are competitive kinetic processes. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[96] P. V. von Hippel,et al. A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli. , 1991, Biochemistry.
[97] Smita S. Patel,et al. Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. , 1991, Biochemistry.
[98] D. Steege,et al. Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein. , 1990, The Journal of biological chemistry.
[99] C. Chan,et al. The Salmonella typhimurium his operon leader region contains an RNA hairpin-dependent transcription pause site. Mechanistic implications of the effect on pausing of altered RNA hairpins. , 1989, The Journal of biological chemistry.
[100] M. Chamberlin,et al. Purified RNA polymerase II recognizes specific termination sites during transcription in vitro. , 1987, The Journal of biological chemistry.
[101] P. Carter,et al. Site-directed mutagenesis. , 1986, The Biochemical journal.
[102] Michael Shales,et al. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases , 1985, Cell.
[103] R. Schnabel,et al. Archaebacteria and eukaryotes possess DNA‐dependent RNA polymerases of a common type. , 1983, The EMBO journal.