Computer‐assisted realignment of light micrograph images from consecutive section series of cat cerebral cortex

Two computer‐ and image‐analysis‐based procedures for realignment of images of consecutive light micrographs of nerve tissue (cat motor cortex) have been developed. One procedure (CENT) was interactive, employing the subjective overall ‘best fit’ of two images to each other and the other (AUTOCENT) was based on an automatic comparison of two images (image thresholding and binary comparison). Images of light micrographs of several hundred consecutive sections were realigned using the interactive and the automatic methods. The interactive procedure was easy to use; realignment of an image took only a few minutes in the hands of an experienced operator and should be easy to implement on commercially available smaller computers like PCs and workstations, but the realignment was possibly disturbed by the operator's subjective expectancy of regular forms. The automatic procedure realigned 1–4 images per hour, might be implemented on smaller computers if the programming is made more efficient, was probably objective and restored the ‘true position of images’.

[1]  John A. Nelder,et al.  A Simplex Method for Function Minimization , 1965, Comput. J..

[2]  P. E. Anuta,et al.  Spatial Registration of Multispectral and Multitemporal Digital Imagery Using Fast Fourier Transform Techniques , 1970 .

[3]  D P Huijsmans,et al.  Toward computerized morphometric facilities: A review of 58 software packages for computer‐aided three‐dimensional reconstruction, quantification, and picture generation from parallel serial sections , 1986, The Anatomical record.

[4]  Arthur W. Toga,et al.  Image Analysis of Brain Physiology , 1985, IEEE Computer Graphics and Applications.

[5]  M. Rydmark,et al.  Changes in shape and size of cat spinal root myelinated nerve fibers during fixation and Vestopal-w embedding for electron microscopy. , 1982, Journal of ultrastructure research.

[6]  Mikio Takagi,et al.  Digital Processing of Remotely Sensed Imagery , 1975 .

[7]  J. Moik Digital Processing of Remotely Sensed Images. NASA SP-431 , 1980 .

[8]  J W Prothero,et al.  Three-dimensional reconstruction from serial sections. IV. The reassembly problem. , 1986, Computers and biomedical research, an international journal.

[9]  William K. Pratt,et al.  Correlation Techniques of Image Registration , 1974, IEEE Transactions on Aerospace and Electronic Systems.

[10]  M Rydmark,et al.  Estimation of sectioning compression and thickness of ultrathin sections through Vestopal-W-embedded cat spinal roots. , 1982, Journal of ultrastructure research.

[11]  John P. Miller,et al.  Computer Reconstruction of Invertebrate Nerve Cells , 1977 .

[12]  M S Braverman,et al.  Three-dimensional reconstructions of objects from serial sections using a microcomputer graphics system. , 1986, The Journal of investigative dermatology.

[13]  Eric Walter,et al.  Automated registration of dissimilar images: Application to medical imagery , 1989, Comput. Vis. Graph. Image Process..

[14]  Harvey F. Silverman,et al.  A Class of Algorithms for Fast Digital Image Registration , 1972, IEEE Transactions on Computers.

[15]  Lyndon S. Hibbard,et al.  Objective image alignment for three-dimensional reconstruction of digital autoradiograms , 1988, Journal of Neuroscience Methods.

[16]  H. Y. Elder,et al.  Automated image segmentation and serial section reconstruction in microscopy , 1990, Journal of microscopy.

[17]  K Brändle,et al.  A new method for aligning histological serial sections for three-dimensional reconstruction. , 1989, Computers and biomedical research, an international journal.

[18]  David B. Salzman,et al.  A Method of General Moments for Orienting 2D Projections of Unknown 3D Objects , 1990, Comput. Vis. Graph. Image Process..

[19]  Joseph J. Capowski,et al.  Computer Techniques in Neuroanatomy , 1989, Springer US.

[20]  Alain Venot,et al.  Automated Correction of Patient Motion and Gray Values Prior to Subtraction in Digitized Angiography , 1984, IEEE Transactions on Medical Imaging.

[21]  Eric Walter,et al.  Digital Methods for Change Detection in Medical Images , 1984 .

[22]  W. J. Perkins,et al.  Three-dimensional reconstruction of biological sections. , 1982, Journal of biomedical engineering.

[23]  Michael J. Oppenheim Three-Dimensional Neuroimaging , 1990, The Yale Journal of Biology and Medicine.

[24]  E Harth,et al.  The alignment of serial sections by spatial filtering. , 1978, Computers and biomedical research, an international journal.

[25]  Michael B. Merickel,et al.  3D reconstruction: The registration problem , 1988, Comput. Vis. Graph. Image Process..

[26]  J. F. Lebruchec,et al.  Automated comparison of scintigraphic images. , 1986, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.