Molecular phylogeny and evolution of primate mitochondrial DNA.

We determined nucleotide sequences of homologous 0.9-kb fragments of mitochondrial DNAs (mtDNAs) derived from four species of old-world monkeys, one species of new-world monkeys, and two species of prosimians. With these nucleotide sequences and homologous sequences for five species of hominoids, we constructed a phylogenetic tree for the four groups of primates. The phylogeny obtained is generally consistent with evolutionary trees constructed in previous studies. Our results also suggest that the rate of nucleotide substitution for mtDNAs in hominines (human, chimpanzee, and gorilla) may have slowed down compared with that for old-world monkeys. This evolutionary feature of mitochondrial genes is similar to one found in nuclear genes.

[1]  T. Gojobori,et al.  Phylogenetic relationships among Japanese, rhesus, Formosan, and crab-eating monkeys, inferred from restriction-enzyme analysis of mitochondrial DNAs. , 1988, Molecular biology and evolution.

[2]  M. Nei,et al.  Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree. , 1988, Molecular biology and evolution.

[3]  M. Miyamoto,et al.  Phylogenetic relations of humans and African apes from DNA sequences in the psi eta-globin region. , 1987, Science.

[4]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[5]  Wen-Hsiung Li,et al.  The molecular clock runs more slowly in man than in apes and monkeys , 1987, Nature.

[6]  R. DeSalle,et al.  Discordance of nuclear and mitochondrial DNA phylogenies in Hawaiian Drosophila. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[7]  R. Britten,et al.  Rates of DNA sequence evolution differ between taxonomic groups. , 1986, Science.

[8]  Peilin Xu,et al.  Primate η-globin DNA sequences and man's place among the great apes , 1986, Nature.

[9]  M. Nei,et al.  Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. , 1986, Molecular biology and evolution.

[10]  W. Li,et al.  Evidence for higher rates of nucleotide substitution in rodents than in man. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[11]  S. Henikoff Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. , 1984, Gene.

[12]  J. A. Wahleithner,et al.  Sequence and arrangement of the genes for cytochrome b, URF1, URF4L, URF4, URF5, URF6 and five tRNAs in Drosophila mitochondrial DNA. , 1984, Nucleic acids research.

[13]  D. Pilbeam,et al.  The descent of hominoids and hominids. , 1984, Scientific American.

[14]  A. Wilson,et al.  Mitochondrial DNA evolution in mice. , 1983, Genetics.

[15]  C. Aquadro,et al.  EXTENSIVE GENETIC VARIATION IN MITOCHONDRIAL DNA'S AMONG GEOGRAPHIC POPULATIONS OF THE DEER MOUSE, PEROMYSCUS MANICULATUS , 1983, Evolution; international journal of organic evolution.

[16]  F. Sanger,et al.  Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. , 1982, Journal of molecular biology.

[17]  D. A. Clayton,et al.  Sequence and gene organization of mouse mitochondrial DNA , 1981, Cell.

[18]  F. Sanger,et al.  Sequence and organization of the human mitochondrial genome , 1981, Nature.

[19]  W. Brown,et al.  Evolutionary tree for apes and humans based on cleavage maps of mitochondrial DNA. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[20]  H. Cann,et al.  Maternal inheritance of human mitochondrial DNA. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[21]  T. Bonner,et al.  Evolution of DNA sequences has been retarded in Malagasy primates , 1980, Nature.

[22]  W. Brown,et al.  Rapid evolution of animal mitochondrial DNA. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[23]  F. Sanger,et al.  DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[24]  P Berg,et al.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. , 1977, Journal of molecular biology.

[25]  E. Southern Detection of specific sequences among DNA fragments separated by gel electrophoresis. , 1975, Journal of molecular biology.

[26]  M. King,et al.  Evolution at two levels in humans and chimpanzees. , 1975, Science.

[27]  Peter H. A. Sneath,et al.  Numerical Taxonomy: The Principles and Practice of Numerical Classification , 1973 .

[28]  C. Groves,et al.  Primate Evolution: An Introduction to Man's Place in Nature. , 1973 .

[29]  J. Farris Estimating Phylogenetic Trees from Distance Matrices , 1972, The American Naturalist.

[30]  M. Kimura Evolutionary Rate at the Molecular Level , 1968, Nature.

[31]  J. Fooden,et al.  Rhesus and Crab-Eating Macaques: Intergradation in Thailand , 1964, Science.

[32]  J. Buettner‐Janusch The Antecedents of Man , 1963, The Yale Journal of Biology and Medicine.

[33]  H. Masaki,et al.  Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA. , 1987, Gene.

[34]  C. Saccone,et al.  Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes , 1987, Nature.

[35]  M. Stoneking,et al.  Mitochondrial DNA and human evolution , 1987, Nature.

[36]  P. Andrews Fossil evidence on human origins and dispersal. , 1986, Cold Spring Harbor symposia on quantitative biology.

[37]  S. Horai,et al.  Mitochondrial DNA polymorphism in Japanese monkeys, Macaca fuscata , 1986 .

[38]  W. Brown,et al.  A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications. , 1986, Molecular biology and evolution.

[39]  T. Gojobori,et al.  Distinct clustering of mitochondrial DNA types among Japanese, Caucasians and Negroes , 1986 .

[40]  P. Gingerich Primate evolution: Evidence from the fossil record, comparative morphology, and molecular biology , 1984 .

[41]  A. Eudey,et al.  Pleistocene glacial phenomena and the evolution of Asian macaques , 1980 .

[42]  D. Lindburg The Macaques : studies in ecology, behavior, and evolution , 1980 .

[43]  E. Delson Fossil macaques, phyletic relationships and a scenario of deployment , 1980 .

[44]  T. Shotake,et al.  GENETIC VARIATIONS WITHIN AND BETWEEN SPECIES OF ASIAN MACAQUES , 1977 .

[45]  M. Goodman Toward a Genealogical Description of the Primates , 1976 .

[46]  M. Goodman,et al.  Immunodiffusion Evidence on the Phylogeny of the Primates , 1976 .

[47]  Y. Sugiyama Life history of male Japanese monkeys , 1976 .

[48]  L. Orgel,et al.  Biochemical Evolution , 1971, Nature.

[49]  W. C. Osman Hill,et al.  Primates : comparative anatomy and taxonomy , 1953 .