A Probabilistic Template Model for Finding Macromolecules in MET Volume Images

We introduce and investigate probabilistic templates with particular focus on the application of protein identification in electron tomography volumes. We suggest to create templates with a weighte ...

[1]  S Birmanns,et al.  Using situs for flexible and rigid-body fitting of multiresolution single-molecule data. , 2001, Journal of structural biology.

[2]  Friedrich Förster,et al.  Structure determination in situ by averaging of tomograms. , 2007, Methods in cell biology.

[3]  Sara Sandin,et al.  Structure and flexibility of individual immunoglobulin G molecules in solution. , 2004, Structure.

[4]  Gunilla Borgefors,et al.  A refined circular template matching method for classification of human cytomegalovirus capsids in TEM images , 2004, Comput. Methods Programs Biomed..

[5]  Jack Snoeyink,et al.  Computing contour trees in all dimensions , 2000, SODA '00.

[6]  Roberto Brunelli,et al.  Advanced , 1980 .

[7]  F. Tama,et al.  Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. , 2004, Journal of molecular biology.

[8]  J. Mccammon,et al.  Situs: A package for docking crystal structures into low-resolution maps from electron microscopy. , 1999, Journal of structural biology.

[9]  A Engel,et al.  Visualizing 3D data obtained from microscopy on the Internet. , 1999, Journal of structural biology.

[10]  Roberto Brunelli,et al.  Template Matching Techniques in Computer Vision: Theory and Practice , 2009 .

[11]  W Wriggers,et al.  Modeling tricks and fitting techniques for multiresolution structures. , 2001, Structure.

[12]  A. Ardeshir Goshtasby,et al.  Volume image registration by template matching , 2001, Image Vis. Comput..

[13]  Leonardo G. Trabuco,et al.  Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. , 2008, Structure.

[14]  Anders Brun,et al.  Rigid Template Registration in MET Images using CUDA , 2012, VISAPP.

[15]  P. Schönemann,et al.  A generalized solution of the orthogonal procrustes problem , 1966 .

[16]  J. McIntosh,et al.  Cellular electron microscopy , 2007 .