Comprehensive analysis of microsatellite polymorphisms in human populations

[1]  Davis J. McCarthy,et al.  Properties of structural variants and short tandem repeats associated with gene expression and complex traits , 2020, Nature Communications.

[2]  Christopher M. DeBoever,et al.  Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats , 2019, bioRxiv.

[3]  N. Saitou,et al.  Late Jomon male and female genome sequences from the Funadomari site in Hokkaido, Japan , 2019, Anthropological Science.

[4]  Evan E. Eichler,et al.  Characterizing the Major Structural Variant Alleles of the Human Genome , 2019, Cell.

[5]  Satoru Miyano,et al.  Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types , 2018, bioRxiv.

[6]  Dennis Y. Wang,et al.  Developmental validation of GlobalFiler™ PCR amplification kit: a 6-dye multiplex assay designed for amplification of casework samples , 2018, International Journal of Legal Medicine.

[7]  Icgc,et al.  Pan-cancer analysis of whole genomes , 2017, bioRxiv.

[8]  D. Reich,et al.  Interpreting short tandem repeat variations in humans using mutational constraint , 2016, Nature Genetics.

[9]  Jay Shendure,et al.  Classification and characterization of microsatellite instability across 18 cancer types , 2016, Nature Medicine.

[10]  M. L. C. Vieira,et al.  Microsatellite markers: what they mean and why they are so useful , 2016, Genetics and molecular biology.

[11]  Yun S. Song,et al.  The Simons Genome Diversity Project: 300 genomes from 142 diverse populations , 2016, Nature.

[12]  Yaniv Erlich,et al.  Abundant contribution of short tandem repeats to gene expression variation in humans , 2015, Nature Genetics.

[13]  Gabor T. Marth,et al.  A global reference for human genetic variation , 2015, Nature.

[14]  Hiroaki Nakahara,et al.  Allele frequencies for 21 autosomal short tandem repeat loci obtained using GlobalFiler in a sample of 1501 individuals from the Japanese population. , 2015, Legal medicine.

[15]  Kengo Kinoshita,et al.  Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals , 2015, Nature Communications.

[16]  I. Carbone,et al.  Challenges in analysis and interpretation of microsatellite data for population genetic studies , 2014, Ecology and evolution.

[17]  Laure Ségurel,et al.  Microsatellite data show recent demographic expansions in sedentary but not in nomadic human populations in Africa and Eurasia , 2014, European Journal of Human Genetics.

[18]  C. Queitsch,et al.  The overdue promise of short tandem repeat variation for heritability , 2014, bioRxiv.

[19]  Yaniv Erlich,et al.  The landscape of human STR variation , 2014, bioRxiv.

[20]  Noah A. Rosenberg,et al.  Population Structure in a Comprehensive Genomic Data Set on Human Microsatellite Variation , 2013, G3: Genes, Genomes, Genetics.

[21]  H. Garner,et al.  Population-scale analysis of human microsatellites reveals novel sources of exonic variation. , 2013, Gene.

[22]  Hani Z. Girgis,et al.  MsDetector: toward a standard computational tool for DNA microsatellites detection , 2012, Nucleic acids research.

[23]  Koen Bostoen,et al.  Bringing together linguistic and genetic evidence to test the Bantu expansion , 2012, Proceedings of the Royal Society B: Biological Sciences.

[24]  Swapan Mallick,et al.  A direct characterization of human mutation based on microsatellites , 2012, Nature Genetics.

[25]  M. Batzer,et al.  Repetitive Elements May Comprise Over Two-Thirds of the Human Genome , 2011, PLoS genetics.

[26]  Ryan J. Haasl,et al.  A genomic portrait of human microsatellite variation. , 2011, Molecular biology and evolution.

[27]  B. Charlesworth Effective population size and patterns of molecular evolution and variation , 2009, Nature Reviews Genetics.

[28]  L. Excoffier,et al.  Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection , 2009, Annals of human genetics.

[29]  Amit R. Indap,et al.  Genes mirror geography within Europe , 2008, Nature.

[30]  J. Butler,et al.  Genetics and Genomics of Core Short Tandem Repeat Loci Used in Human Identity Testing , 2006, Journal of forensic sciences.

[31]  J. Hey On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas , 2005, PLoS biology.

[32]  L. Cavalli-Sforza The Human Genome Diversity Project: past, present and future , 2005, Nature Reviews Genetics.

[33]  H. Ellegren Microsatellites: simple sequences with complex evolution , 2004, Nature Reviews Genetics.

[34]  P. Gill,et al.  STR analysis of artificially degraded DNA-results of a collaborative European exercise. , 2004, Forensic science international.

[35]  John Wakeley,et al.  A diffusion approximation for selection and drift in a subdivided population. , 2003, Genetics.

[36]  M. Feldman,et al.  Genetic Structure of Human Populations , 2002, Science.

[37]  John M. Butler,et al.  STRBase: a short tandem repeat DNA database for the human identity testing community , 2001, Nucleic Acids Res..

[38]  G. Benson,et al.  Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.

[39]  H. Cann Human genome diversity. , 1998, Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie.

[40]  L. Jin,et al.  Microsatellite data support an early population expansion in Africa. , 1997, Genome research.

[41]  L. Jin,et al.  Ethnic-affiliation estimation by use of population-specific DNA markers. , 1997, American journal of human genetics.