GSVA: The Gene Set Variation Analysis package for microarray and RNA-seq data
暂无分享,去创建一个
[1] Antonio Canale,et al. Bayesian Kernel Mixtures for Counts , 2011, Journal of the American Statistical Association.
[2] M. Eileen Dolan,et al. A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity , 2007, Proceedings of the National Academy of Sciences.
[3] Gordon K Smyth,et al. Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .
[4] M. Daly,et al. PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes , 2003, Nature Genetics.
[5] S. Gabriel,et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. , 2010, Cancer cell.
[6] H. Willard,et al. X-inactivation profile reveals extensive variability in X-linked gene expression in females , 2005, Nature.
[7] Y. Xing,et al. A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function , 2008, The Journal of Neuroscience.
[8] Doheon Lee,et al. Inferring Pathway Activity toward Precise Disease Classification , 2008, PLoS Comput. Biol..
[9] Justin Guinney,et al. GSVA: gene set variation analysis for microarray and RNA-Seq data , 2013, BMC Bioinformatics.
[10] Yuan Qi,et al. Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA , IDH 1 , EGFR , and NF 1 Citation Verhaak , 2010 .
[11] Anne Lohrli. Chapman and Hall , 1985 .
[12] Egon S. Pearson,et al. Comparison of tests for randomness of points on a line , 1963 .
[13] K. Hansen,et al. Removing technical variability in RNA-seq data using conditional quantile normalization , 2012, Biostatistics.
[14] P. J. Green,et al. Density Estimation for Statistics and Data Analysis , 1987 .
[15] Chang-Peng Wu,et al. Integrated genomic analysis identifies clinically relevant subtypes of renal clear cell carcinoma , 2018, BMC Cancer.
[16] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[17] E. Lander,et al. MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia , 2002, Nature Genetics.
[18] Jun Lu,et al. Pathway level analysis of gene expression using singular value decomposition , 2005, BMC Bioinformatics.
[19] Ben S. Wittner,et al. Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 , 2009, Nature.
[20] R. Irizarry,et al. A gene expression bar code for microarray data , 2007, Nature Methods.
[21] Sayan Mukherjee,et al. Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles , 2006, ISMB.
[22] Joseph K. Pickrell,et al. Understanding mechanisms underlying human gene expression variation with RNA sequencing , 2010, Nature.
[23] T. Graves,et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes , 2003, Nature.