Fast and High-Accuracy Localization for Three-Dimensional Single-Particle Tracking

We report a non-iterative localization algorithm that utilizes the scaling of a three-dimensional (3D) image in the axial direction and focuses on evaluating the radial symmetry center of the scaled image to achieve the desired single-particle localization. Using this approach, we analyzed simulated 3D particle images by wide-field microscopy and confocal microscopy respectively, and the 3D trajectory of quantum dots (QDs)-labeled influenza virus in live cells. Both applications indicate that the method can achieve 3D single-particle localization with a sub-pixel precision and sub-millisecond computation time. The precision is almost the same as that of the iterative nonlinear least-squares 3D Gaussian fitting method, but with two orders of magnitude higher computation speed. This approach can reduce considerably the time and costs for processing the large volume data of 3D images for 3D single-particle tracking, which is especially suited for 3D high-precision single-particle tracking, 3D single-molecule imaging and even new microscopy techniques.

[1]  S. Ram,et al.  High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells. , 2008, Biophysical journal.

[2]  Dai-Wen Pang,et al.  Effectively and efficiently dissecting the infection of influenza virus by quantum-dot-based single-particle tracking. , 2012, ACS nano.

[3]  D. Malacara-Hernández,et al.  PRINCIPLES OF OPTICS , 2011 .

[4]  D. Pang,et al.  Myosin-driven intercellular transportation of wheat germ agglutinin mediated by membrane nanotubes between human lung cancer cells. , 2012, ACS nano.

[5]  S. Hess,et al.  Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples , 2008, Nature Methods.

[6]  Alexander Zelinsky,et al.  Fast Radial Symmetry for Detecting Points of Interest , 2003, IEEE Trans. Pattern Anal. Mach. Intell..

[7]  Sean Quirin,et al.  Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions , 2011, Proceedings of the National Academy of Sciences.

[8]  R. Parthasarathy Rapid, accurate particle tracking by calculation of radial symmetry centers , 2012, Nature Methods.

[9]  Michael J Rust,et al.  Visualizing infection of individual influenza viruses , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[10]  D. Pang,et al.  Clathrin-Mediated Endocytosis in Living Host Cells Visualized through Quantum Dot Labeling of Infectious Hematopoietic Necrosis Virus , 2011, Journal of Virology.

[11]  Zhen Gu,et al.  Enhanced real-time monitoring of adeno-associated virus trafficking by virus-quantum dot conjugates. , 2011, ACS nano.

[12]  W. E. Moerner,et al.  Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function. , 2010, Nano letters.

[13]  Qi-hua He,et al.  The transport of α1A-adrenergic receptor with 33-nm step size in live cells , 2007 .

[14]  Fei Liu,et al.  Intercellular transportation of quantum dots mediated by membrane nanotubes. , 2010, ACS nano.

[15]  Yi Lin,et al.  Visualizing the endocytic and exocytic processes of wheat germ agglutinin by quantum dot-based single-particle tracking. , 2011, Biomaterials.

[16]  Samuel J. Lord,et al.  Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function , 2009, Proceedings of the National Academy of Sciences.

[17]  K. Jacobson,et al.  Single-particle tracking: applications to membrane dynamics. , 1997, Annual review of biophysics and biomolecular structure.

[18]  Paul R. Selvin,et al.  Kinesin and Dynein Move a Peroxisome in Vivo: A Tug-of-War or Coordinated Movement? , 2005, Science.

[19]  M. Davidson,et al.  Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination , 2011, Nature Methods.

[20]  M. E. Phipps,et al.  Time-resolved three-dimensional molecular tracking in live cells. , 2010, Nano letters.

[21]  L. Holtzer,et al.  Nanometric three-dimensional tracking of individual quantum dots in cells , 2007 .

[22]  D. Pang,et al.  High-efficiency dual labeling of influenza virus for single-virus imaging. , 2012, Biomaterials.

[23]  D. Toomre,et al.  Adaptive optics enables three-dimensional single particle tracking at the sub-millisecond scale , 2013 .

[24]  U. Kubitscheck,et al.  Single nuclear pores visualized by confocal microscopy and image processing. , 1996, Biophysical journal.

[25]  E. Gratton,et al.  Real-time nanomicroscopy via three-dimensional single-particle tracking. , 2009, Chemphyschem : a European journal of chemical physics and physical chemistry.

[26]  Akihiro Kusumi,et al.  Single-molecule tracking of membrane molecules: plasma membrane compartmentalization and dynamic assembly of raft-philic signaling molecules. , 2005, Seminars in immunology.

[27]  X. Zhuang,et al.  Fast three-dimensional super-resolution imaging of live cells , 2011, Nature Methods.

[28]  Mark Bates,et al.  Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy , 2008, Science.

[29]  Akihiro Kusumi,et al.  Ultrafine membrane compartments for molecular diffusion as revealed by single molecule techniques. , 2004, Biophysical journal.

[30]  Qi-hua He,et al.  The transport of alpha(1A)-adrenergic receptor with 33-nm step size in live cells. , 2007, Biochemical and biophysical research communications.

[31]  J. Pawley,et al.  Handbook of Biological Confocal Microscopy , 1990, Springer US.

[32]  Christoph Bräuchle,et al.  Single-particle tracking as a quantitative microscopy-based approach to unravel cell entry mechanisms of viruses and pharmaceutical nanoparticles. , 2011, Molecular therapy : the journal of the American Society of Gene Therapy.

[33]  James H Werner,et al.  Time-resolved, confocal single-molecule tracking of individual organic dyes and fluorescent proteins in three dimensions. , 2012, ACS nano.

[34]  Aurélie Dupont,et al.  Nanoscale three-dimensional single particle tracking. , 2011, Nanoscale.

[35]  A. Patwardhan,et al.  Subpixel position measurement using 1D, 2D and 3D centroid algorithms with emphasis on applications in confocal microscopy , 1997 .

[36]  Akihiro Kusumi,et al.  Phospholipids undergo hop diffusion in compartmentalized cell membrane , 2002, The Journal of cell biology.

[37]  T. Oosterkamp,et al.  Parallel nanometric 3D tracking of intracellular gold nanorods using multifocal two-photon microscopy. , 2013, Nano letters.