Restricted sidechain plasticity in the structures of native proteins and complexes
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D. Baker | S. Khare | S. Fleishman | N. Koga | D. Baker
[1] D. Eisenberg,et al. A method to identify protein sequences that fold into a known three-dimensional structure. , 1991, Science.
[2] D C Richardson,et al. Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992. , 1992, Biophysical journal.
[3] Roland L. Dunbrack,et al. Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains , 1994, Nature Structural Biology.
[4] H. Wolfson,et al. Shape complementarity at protein–protein interfaces , 1994, Biopolymers.
[5] S. L. Mayo,et al. De novo protein design: fully automated sequence selection. , 1997, Science.
[6] Julia M. Shifman,et al. Exploring the origins of binding specificity through the computational redesign of calmodulin , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[7] Wendell A. Lim,et al. Optimization of specificity in a cellular protein interaction network by negative selection , 2003, Nature.
[8] D. Baker,et al. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy , 2003, Science.
[9] P. Harbury,et al. Automated design of specificity in molecular recognition , 2003, Nature Structural Biology.
[10] Jeffrey J. Gray,et al. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. , 2003, Journal of molecular biology.
[11] David E. Kim,et al. Computational Alanine Scanning of Protein-Protein Interfaces , 2004, Science's STKE.
[12] D. Baker,et al. Computational redesign of protein-protein interaction specificity , 2004, Nature Structural &Molecular Biology.
[13] Ruth Nussinov,et al. PatchDock and SymmDock: servers for rigid and symmetric docking , 2005, Nucleic Acids Res..
[14] Jens Meiler,et al. New algorithms and an in silico benchmark for computational enzyme design , 2006, Protein science : a publication of the Protein Society.
[15] D. Baker,et al. The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection , 2007, Cell.
[16] Eric A. Althoff,et al. De Novo Computational Design of Retro-Aldol Enzymes , 2008, Science.
[17] Eric A. Althoff,et al. Kemp elimination catalysts by computational enzyme design , 2008, Nature.
[18] David Baker,et al. Macromolecular modeling with rosetta. , 2008, Annual review of biochemistry.
[19] Alexandre M J J Bonvin,et al. Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark. , 2010, Journal of proteome research.
[20] Thomas Szyperski,et al. Computational design of a PAK1 binding protein. , 2010, Journal of molecular biology.
[21] David Baker,et al. An exciting but challenging road ahead for computational enzyme design , 2010, Protein science : a publication of the Protein Society.