Sequential logic operations with surface-confined polypyridyl complexes displaying molecular random access memory features.

The processing of molecular information is essential for organisms to respond to external/internal stimuli. For example, in vision, a single molecule of 11-cis-retinal is photoisomerized to all-trans-retinal, which starts a cascade of signal transduction pathways that eventually enables us to see. The fact that molecules can be implemented for processing information akin to electronic systems was recognized and demonstrated by the construction of a photo-ionic AND gate by de Silva et al. This opened up an exciting research area that led to a variety of molecular logic systems such as logic gates, half-adders and subtractors, multiplexers, and encoders. Bio-inspired systems have also attracted much attention. The output of these combinatorial systems is exclusively a Boolean function of the current inputs. In contrast, the output of sequential systems is determined by the current state of the system, which is usually a function of the previous input and the present input. This situation thus requires that the molecular-based system must remember information about the previous input, and hence, functions as a basic memory element. Consequently, sequential logic systems are commonly used in the construction of memory devices, delay and storage elements, and finite-state machines. The demonstration of sequential logic operations with molecularbased systems is relatively rare, and includes circuits, molecular keypad locks, 13] and finite-state machines. Furthermore, previous studies on molecular-based logic are almost exclusively based on solution-based chemistry. Recently, we reported the proof-of-principle that 1-based monolayers (Scheme 1) can perform combinatorial logic operations. The system mimics the input and output characteristics of electronic circuitry when using chemical reagents as inputs and the formal oxidation state of the system as the output. Here, we demonstrate a fundamentally new concept towards reversible and reconfigurable sequential logic operations by addressing the memory function of the 1-based monolayers. Interestingly, not only were we able to generate sequential logic circuits with one, two, and even three chemical inputs, but we were also able to use this sequential logic approach to model the memory function of random access memory (RAM). Moreover, by keeping the starting state static or dynamic, delicate control is obtained regarding which kind of logic is performed—combinatorial or sequential logic. A dynamic starting state generates sequential circuits, whereas a static starting state produces combinatorial circuits. For sequential operations with the 1-based monolayer, the presence or absence of an arbitrary chemical input is defined as a logical 1 or 0, respectively. The output or state is dependent on the formal oxidation state of the system, which is monitored by UV/Vis spectroscopy in the transmission mode. The logical outputs 1 and 0 are defined as Os and Os, respectively (See the Supporting Information). For example, a one-input sequential system was designed with Cr ions in an aqueous solution at pH< 1 as the input. The four possible combinations were demonstrated with the same monolayer (Table 1). Only when Cr ions are present and the monolayer is in state 1 (Os) can the logic gate change to state 0 (Os; Table 1, see also Figure S1 in the Supporting Information). Since the current state is variable, the output Scheme 1. The osmium polypyridyl complex used in this study.

[1]  K. Szaciłowski Digital information processing in molecular systems. , 2008, Chemical reviews.

[2]  Bernadine O. F. McKinney,et al.  Molecular computational elements encode large populations of small objects , 2006, Nature materials.

[3]  Joakim Andréasson,et al.  Molecular all-photonic encoder-decoder. , 2008, Journal of the American Chemical Society.

[4]  A. P. de Silva,et al.  Molecular logic and computing. , 2007, Nature nanotechnology.

[5]  Gonen Ashkenasy,et al.  Boolean logic functions of a synthetic peptide network. , 2004, Journal of the American Chemical Society.

[6]  M. Reed,et al.  Molecular random access memory cell , 2001 .

[7]  Jian Zhou,et al.  Bioelectrocatalytic system coupled with enzyme-based biocomputing ensembles performing boolean logic operations: approaching "smart" physiologically controlled biointerfaces. , 2009, ACS applied materials & interfaces.

[8]  F. Raymo,et al.  Signal communication between molecular switches. , 2001, Organic letters.

[9]  Françoise Remacle,et al.  On spectroscopy, control, and molecular information processing. , 2002, Chemphyschem : a European journal of chemical physics and physical chemistry.

[10]  C. McCoy,et al.  A molecular photoionic AND gate based on fluorescent signalling , 1993, Nature.

[11]  He Tian,et al.  An electrochemical/photochemical information processing system using a monolayer-functionalized electrode. , 2006, Chemical communications.

[12]  Graham de Ruiter,et al.  Selective optical recognition and quantification of parts per million levels of Cr(6+) in aqueous and organic media by immobilized polypyridyl complexes on glass. , 2008, Journal of the American Chemical Society.

[13]  Francoise Remacle,et al.  Electrochemically driven sequential machines: an implementation of copper rotaxanes. , 2009, Chemistry.

[14]  Milko E van der Boom,et al.  Optical sensing of parts per million levels of water in organic solvents using redox-active osmium chromophore-based monolayers. , 2006, Journal of the American Chemical Society.

[15]  A. Credi Molecules that make decisions. , 2007, Angewandte Chemie.

[16]  Jean-Marie Lehn,et al.  Ion-triggered multistate molecular switching device based on regioselective coordination-controlled ion binding. , 2005, Chemistry.

[17]  Juyoung Yoon,et al.  Fluorescent molecular logic gates using microfluidic devices. , 2008, Angewandte Chemie.

[18]  I. Willner,et al.  Logic gates and antisense DNA devices operating on a translator nucleic Acid scaffold. , 2009, ACS nano.

[19]  Jian Zhou,et al.  Coupling of Biocomputing Systems with Electronic Chips: Electronic Interface for Transduction of Biochemical Information , 2009 .

[20]  Margherita Venturi,et al.  A chemical system that mimics decoding operations. , 2009, Chemphyschem : a European journal of chemical physics and physical chemistry.

[21]  Françisco M Raymo,et al.  Memory effects based on intermolecular photoinduced proton transfer. , 2003, Journal of the American Chemical Society.

[22]  Galina Melman,et al.  A molecular keypad lock: a photochemical device capable of authorizing password entries. , 2007, Journal of the American Chemical Society.

[23]  Alberto Credi,et al.  All-optical integrated logic operations based on chemical communication between molecular switches. , 2009, Chemistry.

[24]  Evgeny Katz,et al.  Switchable electrode controlled by enzyme logic network system: approaching physiologically regulated bioelectronics. , 2009, Journal of the American Chemical Society.

[25]  A. Prasanna de Silva,et al.  Molecular computing: A layer of logic , 2008, Nature.

[26]  Uwe Pischel,et al.  Chemische Strategien für den Aufbau molekularer Logikelemente zur Addition und Subtraktion , 2007 .

[27]  Françisco M Raymo,et al.  A switch in a cage with a memory. , 2003, Organic letters.

[28]  M. Lahav,et al.  Electrochromic behavior of a self-propagating molecular-based assembly. , 2009, Journal of the American Chemical Society.

[29]  Alberto Credi,et al.  Molecular logic: Monolayers with an IQ , 2008 .

[30]  Milko E van der Boom,et al.  Redox-active monolayers as a versatile platform for integrating boolean logic gates. , 2008, Angewandte Chemie.

[31]  Alberto Credi Moleküle, die Entscheidungen treffen , 2007 .

[32]  Joakim Andréasson,et al.  All-photonic molecular half-adder. , 2006, Journal of the American Chemical Society.

[33]  Joakim Andréasson,et al.  An all-photonic molecular keypad lock. , 2009, Chemistry.

[34]  H. Tian,et al.  A fluorophore capable of crossword puzzles and logic memory. , 2007, Angewandte Chemie.

[35]  Subodh Kumar,et al.  Superimposed molecular keypad lock and half-subtractor implications in a single fluorophore. , 2009, Chemical communications.

[36]  M. Amelia,et al.  A simple unimolecular multiplexer/demultiplexer. , 2008, Angewandte Chemie.

[37]  F Remacle,et al.  Electrical addressing of confined quantum systems for quasiclassical computation and finite state logic machines. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[38]  Françoise Remacle,et al.  Principles of design of a set-reset finite state logic nanomachine , 2008 .

[39]  M Stojcev,et al.  Logic and Computer Design Fundamentals , 1998 .

[40]  A. P. D. S. and,et al.  Proof-of-Principle of Molecular-Scale Arithmetic , 2000 .

[41]  J. Andréasson,et al.  Molecular 2:1 digital multiplexer. , 2007, Angewandte Chemie.

[42]  Stoddart,et al.  Electronically configurable molecular-based logic gates , 1999, Science.

[43]  David R Walt,et al.  Intelligent medical diagnostics via molecular logic. , 2009, Journal of the American Chemical Society.

[44]  Uwe Pischel,et al.  Chemical approaches to molecular logic elements for addition and subtraction. , 2007, Angewandte Chemie.

[45]  Giacomo Bergamini,et al.  Old molecules, new concepts: [Ru(bpy)(3)](2+) as a molecular encoder-decoder. , 2009, Angewandte Chemie.

[46]  Thomas A. Moore,et al.  All‐Photonic Molecular XOR and NOR Logic Gates Based on Photochemical Control of Fluorescence in a Fulgimide–Porphyrin–Dithienylethene Triad , 2007 .

[47]  Wensheng Shi,et al.  Fluorescent logic gates chemically attached to silicon nanowires. , 2009, Angewandte Chemie.

[48]  Wojciech Macyk,et al.  Light-driven OR and XOR programmable chemical logic gates. , 2006, Journal of the American Chemical Society.

[49]  D. Qu,et al.  A half adder based on a photochemically driven [2]rotaxane. , 2005, Angewandte Chemie.

[50]  David Margulies,et al.  Fluorescein as a model molecular calculator with reset capability , 2005, Nature materials.

[51]  Alberto Credi,et al.  Photochemical switching of luminescence and singlet oxygen generation by chemical signal communication. , 2009, Chemical communications.

[52]  U. Pischel,et al.  Molecular logic devices (half-subtractor, comparator, complementary output circuit) by controlling photoinduced charge transfer processes , 2008 .