Amyloid Aggregates Are Localized to the Nonadherent Detached Fraction of Aging Streptococcus mutans Biofilms

Streptococcus mutans is a keystone pathogen and causative agent of human dental caries, commonly known as tooth decay, the most prevalent infectious disease in the world. Like many pathogens, S. mutans causes disease in biofilms, which for dental decay begins with bacterial attachment to the salivary pellicle coating the tooth surface. ABSTRACT The number of bacterial species recognized to utilize purposeful amyloid aggregation within biofilms continues to grow. The oral pathogen Streptococcus mutans produces several amyloidogenic proteins, including adhesins P1 (also known as AgI/II, PAc) and WapA, whose truncation products, namely, AgII and AgA, respectively, represent the amyloidogenic moieties. Amyloids demonstrate common biophysical properties, including recognition by Thioflavin T (ThT) and Congo red (CR) dyes that bind to the cross β-sheet quaternary structure of amyloid aggregates. Previously, we observed amyloid formation to occur only after 60 h or more of S. mutans biofilm growth. Here, we extend those findings to investigate where amyloid is detected within 1- and 5-day-old biofilms, including within tightly adherent compared with those in nonadherent fractions. CR birefringence and ThT uptake demonstrated amyloid within nonadherent material removed from 5-day-old cultures but not within 1-day-old or adherent samples. These experiments were done in conjunction with confocal microscopy and immunofluorescence staining with AgII- and AgA-reactive antibodies, including monoclonal reagents shown to discriminate between monomeric protein and amyloid aggregates. These results also localized amyloid primarily to the nonadherent fraction of biofilms. Lastly, we show that the C-terminal region of P1 loses adhesive function following amyloidogenesis and is no longer able to competitively inhibit binding of S. mutans to its physiologic substrate, salivary agglutinin. Taken together, our results provide new evidence that amyloid aggregation negatively impacts the functional activity of a widely studied S. mutans adhesin and are consistent with a model in which amyloidogenesis of adhesive proteins facilitates the detachment of aging biofilms. IMPORTANCE Streptococcus mutans is a keystone pathogen and causative agent of human dental caries, commonly known as tooth decay, the most prevalent infectious disease in the world. Like many pathogens, S. mutans causes disease in biofilms, which for dental decay begins with bacterial attachment to the salivary pellicle coating the tooth surface. Some strains of S. mutans are also associated with bacterial endocarditis. Amyloid aggregation was initially thought to represent only a consequence of protein mal-folding, but now, many microorganisms are known to produce functional amyloids with biofilm environments. In this study, we learned that amyloid formation diminishes the activity of a known S. mutans adhesin and that amyloid is found within the nonadherent fraction of older biofilms. This finding suggests that the transition from adhesin monomer to amyloid facilitates biofilm detachment. Knowing where and when S. mutans produces amyloid will help in developing therapeutic strategies to control tooth decay and other biofilm-related diseases.

[1]  Yuqi Cui,et al.  Small molecule targeting amyloid fibrils inhibits Streptococcus mutans biofilm formation , 2021, AMB Express.

[2]  C. R. Arciola,et al.  Extracellular DNA (eDNA). A Major Ubiquitous Element of the Bacterial Biofilm Architecture , 2021, International journal of molecular sciences.

[3]  J. Valle,et al.  Anti-Biofilm Molecules Targeting Functional Amyloids , 2021, Antibiotics.

[4]  J. Abranches,et al.  Amyloid Aggregation of Streptococcus mutans Cnm Influences Its Collagen-Binding Activity , 2021, bioRxiv.

[5]  V. Chaudhry,et al.  Amyloid Proteins in Plant-Associated Microbial Communities , 2021, Microbial Physiology.

[6]  E. Suuronen,et al.  Mimicking biofilm formation and development: Recent progress in in vitro and in vivo biofilm models , 2021, iScience.

[7]  S. Verma,et al.  Deciphering Streptococcal Biofilms , 2020, Microorganisms.

[8]  E. Gazit,et al.  Two Decades of Studying Functional Amyloids in Microorganisms. , 2020, Trends in microbiology.

[9]  A. Nizhnikov,et al.  Biological Functions of Prokaryotic Amyloids in Interspecies Interactions: Facts and Assumptions , 2020, International journal of molecular sciences.

[10]  Z. Ren,et al.  Biofilm Matrixome: Extracellular Components in Structured Microbial Communities. , 2020, Trends in microbiology.

[11]  G. O’Toole,et al.  Pseudomonas aeruginosa PA14 Enhances the Efficacy of Norfloxacin against Staphylococcus aureus Newman Biofilms , 2020, Journal of Bacteriology.

[12]  K. Rumbaugh,et al.  Biofilm dispersion , 2020, Nature Reviews Microbiology.

[13]  A. de Vicente,et al.  Dual functionality of the amyloid protein TasA in Bacillus physiology and fitness on the phylloplane , 2020, Nature Communications.

[14]  S. Ventura,et al.  The biofilm-associated surface protein Esp of Enterococcus faecalis forms amyloid-like fibers , 2020, npj Biofilms and Microbiomes.

[15]  J. R. Long,et al.  Enhanced purification coupled with biophysical analyses shows cross-β structure as a core building block for Streptococcus mutans functional amyloids , 2020, Scientific Reports.

[16]  A. J. Paula,et al.  Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization , 2020, Nature Communications.

[17]  A. Herr,et al.  The biofilm adhesion protein Aap from Staphylococcus epidermidis forms zinc-dependent amyloid fibers , 2020, The Journal of Biological Chemistry.

[18]  R. McKenna,et al.  Characterization of an intermolecular quaternary interaction between discrete segments of the Streptococcus mutans adhesin P1 by NMR spectroscopy , 2019, The FEBS journal.

[19]  A. Howie Origins of a pervasive, erroneous idea: The “green birefringence” of Congo red‐stained amyloid , 2019, International journal of experimental pathology.

[20]  S. Hagen,et al.  Environmental Triggers of lrgA Expression in Streptococcus mutans , 2019, bioRxiv.

[21]  R. Riek,et al.  Functional Amyloids. , 2019, Cold Spring Harbor perspectives in biology.

[22]  M. Sunde,et al.  Microbial functional amyloids serve diverse purposes for structure, adhesion and defence , 2019, Biophysical Reviews.

[23]  Yina Cao,et al.  Characteristics and influencing factors of amyloid fibers in S. mutans biofilm , 2019, AMB Express.

[24]  S. Palmer,et al.  The Biology of Streptococcus mutans , 2019, Microbiology spectrum.

[25]  C. MacPhee,et al.  Functional Amyloid and Other Protein Fibers in the Biofilm Matrix , 2018, Journal of molecular biology.

[26]  V. Daggett,et al.  De Novo Designed α-Sheet Peptides Inhibit Functional Amyloid Formation of Streptococcus mutans Biofilms. , 2018, Journal of molecular biology.

[27]  H. Remaut,et al.  The Role of Functional Amyloids in Bacterial Virulence , 2018, Journal of molecular biology.

[28]  C. Maury Amyloid and the origin of life: self-replicating catalytic amyloids as prebiotic informational and protometabolic entities , 2018, Cellular and Molecular Life Sciences.

[29]  J. Abranches,et al.  Characterization of the pgf operon involved in the posttranslational modification of Streptococcus mutans surface proteins , 2018, Scientific Reports.

[30]  M. Matsumoto-Nakano Role of Streptococcus mutans surface proteins for biofilm formation , 2017, The Japanese dental science review.

[31]  Paul Stoodley,et al.  Targeting microbial biofilms: current and prospective therapeutic strategies , 2017, Nature Reviews Microbiology.

[32]  R. Briandet,et al.  Spatial Organization Plasticity as an Adaptive Driver of Surface Microbial Communities , 2017, Front. Microbiol..

[33]  I. Kuznetsova,et al.  Thioflavin T fluoresces as excimer in highly concentrated aqueous solutions and as monomer being incorporated in amyloid fibrils , 2017, Scientific Reports.

[34]  D. Senadheera,et al.  Functional amyloids in Streptococcus mutans, their use as targets of biofilm inhibition and initial characterization of SMU_63c. , 2017, Microbiology.

[35]  P. Simpson‐Haidaris,et al.  Heterologous expression of Streptococcus mutans Cnm in Lactococcus lactis promotes intracellular invasion, adhesion to human cardiac tissues and virulence , 2017, Virulence.

[36]  S. Rice,et al.  Biofilms: an emergent form of bacterial life , 2016, Nature Reviews Microbiology.

[37]  S. Ventura,et al.  Staphylococcal Bap Proteins Build Amyloid Scaffold Biofilm Matrices in Response to Environmental Signals , 2016, PLoS pathogens.

[38]  I. Lasa,et al.  Amyloid Structures as Biofilm Matrix Scaffolds , 2016, Journal of bacteriology.

[39]  L. Brady,et al.  Specific binding of a naturally occurring amyloidogenic fragment of Streptococcus mutans adhesin P1 to intact P1 on the cell surface characterized by solid state NMR spectroscopy , 2016, Journal of biomolecular NMR.

[40]  M. Solomon,et al.  Extracellular DNA facilitates the formation of functional amyloids in Staphylococcus aureus biofilms , 2016, Molecular microbiology.

[41]  M. Goulian,et al.  Amyloid-DNA Composites of Bacterial Biofilms Stimulate Autoimmunity. , 2015, Immunity.

[42]  F. Yildiz,et al.  Biofilm Matrix Proteins , 2015, Microbiology spectrum.

[43]  A. Beaussart,et al.  Identification of a Supramolecular Functional Architecture of Streptococcus mutans Adhesin P1 on the Bacterial Cell Surface* , 2015, The Journal of Biological Chemistry.

[44]  D. Otzen,et al.  Functional Amyloids Keep Quorum-sensing Molecules in Check* , 2015, The Journal of Biological Chemistry.

[45]  M. Chapman,et al.  The Biology of the Escherichia coli Extracellular Matrix , 2015, Microbiology spectrum.

[46]  J. R. Long,et al.  An intramolecular lock facilitates folding and stabilizes the tertiary structure of Streptococcus mutans adhesin P1 , 2014, Proceedings of the National Academy of Sciences.

[47]  D. Missiakas,et al.  Sec-secretion and sortase-mediated anchoring of proteins in Gram-positive bacteria. , 2014, Biochimica et biophysica acta.

[48]  R. Hengge,et al.  Stress responses go three dimensional – the spatial order of physiological differentiation in bacterial macrocolony biofilms , 2014, Environmental microbiology.

[49]  R. Hengge,et al.  Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms , 2013, Journal of bacteriology.

[50]  H. Vlamakis,et al.  Isolation, Characterization, and Aggregation of a Structured Bacterial Matrix Precursor* , 2013, The Journal of Biological Chemistry.

[51]  L. Brady,et al.  An Intramolecular Interaction Involving the N Terminus of a Streptococcal Adhesin Affects Its Conformation and Adhesive Function* , 2013, The Journal of Biological Chemistry.

[52]  Blaise R. Boles,et al.  Microbial amyloids--functions and interactions within the host. , 2013, Current opinion in microbiology.

[53]  H. Vlamakis,et al.  Biofilm inhibitors that target amyloid proteins. , 2013, Chemistry & biology.

[54]  P. Lipke,et al.  Functional amyloid formation by Streptococcus mutans. , 2012, Microbiology.

[55]  M. Chapman,et al.  Bacterial amyloids. , 2012, Methods in molecular biology.

[56]  T. K. van den Berg,et al.  The bacteria binding glycoprotein salivary agglutinin (SAG/gp340) activates complement via the lectin pathway. , 2011, Molecular immunology.

[57]  C. Kelly,et al.  Crystal Structure of the C-terminal Region of Streptococcus mutans Antigen I/II and Characterization of Salivary Agglutinin Adherence Domains*♦ , 2011, The Journal of Biological Chemistry.

[58]  Karina Persson,et al.  The changing faces of Streptococcus antigen I/II polypeptide family adhesins , 2010, Molecular microbiology.

[59]  U. Holmskov,et al.  Review: Gp-340/DMBT1 in mucosal innate immunity , 2010, Innate immunity.

[60]  S. Michalek,et al.  Elongated fibrillar structure of a streptococcal adhesin assembled by the high-affinity association of α- and PPII-helices , 2010, Proceedings of the National Academy of Sciences.

[61]  R. Burne,et al.  Protocols to study the physiology of oral biofilms. , 2010, Methods in molecular biology.

[62]  Rebekah A. Robinette,et al.  Beneficial Immunomodulation by Streptococcus mutans Anti-P1 Monoclonal Antibodies Is Fc Independent and Correlates with Increased Exposure of a Relevant Target Epitope1 , 2009, The Journal of Immunology.

[63]  D. Otzen,et al.  We find them here, we find them there: Functional bacterial amyloid , 2008, Cellular and Molecular Life Sciences.

[64]  D. Otzen,et al.  Amyloid adhesins are abundant in natural biofilms. , 2007, Environmental microbiology.

[65]  Rebekah A. Robinette,et al.  Characterization of epitopes recognized by anti-Streptococcus mutans P1 monoclonal antibodies. , 2007, FEMS Immunology & Medical Microbiology.

[66]  M. Chapman,et al.  The curli nucleator protein, CsgB, contains an amyloidogenic domain that directs CsgA polymerization , 2007, Proceedings of the National Academy of Sciences.

[67]  Atanas V Koulov,et al.  Functional amyloid--from bacteria to humans. , 2007, Trends in biochemical sciences.

[68]  Christopher M Dobson,et al.  Characterization of the nanoscale properties of individual amyloid fibrils , 2006, Proceedings of the National Academy of Sciences.

[69]  Matthew R Chapman,et al.  Curli biogenesis and function. , 2006, Annual review of microbiology.

[70]  J. Johansson Amyloid fibrils , 2005, The FEBS journal.

[71]  N. Jakubovics,et al.  Fluid- or Surface-Phase Human Salivary Scavenger Protein gp340 Exposes Different Bacterial Recognition Properties , 2005, Infection and Immunity.

[72]  Dennis Claessen,et al.  A novel class of secreted hydrophobic proteins is involved in aerial hyphae formation in Streptomyces coelicolor by forming amyloid-like fibrils. , 2003, Genes & development.

[73]  R. Donlan,et al.  Biofilms: Microbial Life on Surfaces , 2002, Emerging infectious diseases.

[74]  S. F. Lee Active release of bound antibody by Streptococcus mutans , 1995, Infection and immunity.

[75]  M. Russell,et al.  Affinity and Specificity of the Interactions between Streptococcus mutans Antigen I/II and Salivary Components , 1994, Journal of dental research.

[76]  L. Brady,et al.  Differentiation of salivary agglutinin-mediated adherence and aggregation of mutans streptococci by use of monoclonal antibodies against the major surface adhesin P1 , 1992, Infection and immunity.

[77]  L. Brady,et al.  Identification of monoclonal antibody-binding domains within antigen P1 of Streptococcus mutans and cross-reactivity with related surface antigens of oral streptococci , 1991, Infection and immunity.

[78]  L. Bergmeier,et al.  Sequence analysis of the cloned streptococcal cell surface antigen I/II , 1989, FEBS letters.

[79]  A. Coykendall Classification and identification of the viridans streptococci , 1989, Clinical Microbiology Reviews.

[80]  W. Mcarthur,et al.  Isolation and characterization of monoclonal antibodies specific for antigen P1, a major surface protein of mutans streptococci , 1987, Infection and immunity.

[81]  T. Lehner,et al.  Protein antigens of Streptococcus mutans: purification and properties of a double antigen and its protease-resistant component , 1980, Infection and immunity.

[82]  G. Shockman,et al.  Growth of several cariogenic strains of oral streptococci in a chemically defined medium , 1975, Infection and immunity.