True nature of an archetypal self-assembly system: mobile Au-thiolate species on Au(111).

Alkanethiol self-assembled monolayer (SAM) phases on Au(111) have been assumed to involve direct S head group bonding to the substrate. Using x-ray standing wave experiments, we show the thiolate actually bonds to gold adatoms; self-organization in these archetypal SAM systems must therefore be governed by the movement of these Au-S-R moieties on the surface between two distinct local hollow sites on the surface. The results of recent ab initio total energy calculations provide strong support for this description, and a rationale for the implied significant molecular mobility in these systems.

[1]  D. P. Woodruff,et al.  Atop adsorption site of sulphur head groups in gold-thiolate self-assembled monolayers , 2004 .

[2]  V. Macagno,et al.  Density functional theory study of the adsorption of alkanethiols on Cu(111), Ag(111), and Au(111) in the low and high coverage regimes. , 2005, The journal of physical chemistry. B.

[3]  D. P. Woodruff Surface structure determination using x-ray standing waves , 2005 .

[4]  R. Salvarezza,et al.  Self-assembled monolayers of alkanethiols on Au(111): surface structures, defects and dynamics. , 2005, Physical chemistry chemical physics : PCCP.

[5]  G. Scoles,et al.  Coverage-Dependent Adsorption of CH3S and (CH3S)2 on Au(111): a Density Functional Theory Study , 2001 .

[6]  Tomohiro Hayashi,et al.  Adsorption state of dimethyl disulfide on Au(111): Evidence for adsorption as thiolate at the bridge site , 2001 .

[7]  R. Waser,et al.  A new phase of the c(4 x 2) superstructure of alkanethiols grown by vapor phase deposition on gold. , 2005, Langmuir : the ACS journal of surfaces and colloids.

[8]  R. Nuzzo,et al.  Synthesis, Structure, and Properties of Model Organic Surfaces , 1992 .

[9]  C. Munuera,et al.  New insights in the c(4 x 2) reconstruction of hexadecanethiol on Au(111) revealed by grazing incidence X-ray diffraction. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[10]  D. P. Woodruff Normal incidence X-ray standing wave determination of adsorbate structures , 1998 .

[11]  A. Ulman,et al.  Formation and Structure of Self-Assembled Monolayers. , 1996, Chemical reviews.

[12]  Frank Schreiber,et al.  Self-assembled monolayers: from ‘simple’ model systems to biofunctionalized interfaces , 2004 .

[13]  A. Rappe,et al.  n -alkyl thiol head-group interactions with the Au(111) surface , 2000, cond-mat/0008323.

[14]  W. Andreoni,et al.  Thiols and Disulfides on the Au(111) Surface: The Headgroup−Gold Interaction , 2000 .

[15]  A. Ulman,et al.  Structure and binding of alkanethiolates on gold and silver surfaces: implications for self-assembled monolayers , 1993 .

[16]  P. Finetti,et al.  Performance of the soft x‐ray double crystal monochromator on beamline 4.2 at the SRS, Daresbury Laboratory , 1995 .

[17]  T. Shimada,et al.  Adsorption of thiolates to singly coordinated sites on Au111 evidenced by photoelectron diffraction. , 2003, Physical review letters.

[18]  B. Hammer,et al.  Theoretical study of thiol-induced reconstructions on the Au(1 1 1) surface , 2002 .

[19]  F. Arce,et al.  The dynamic behavior of butanethiol and dodecanethiol adsorbates on Au(111) terraces , 1998 .

[20]  Bjørk Hammer,et al.  A density functional theory study of the adsorption of sulfur, mercapto, and methylthiolate on Au(111) , 2002 .

[21]  G. Scoles,et al.  On the structure and evolution of the buried S/Au interface in self-assembled monolayers : x-ray standing wave results. , 1998 .

[22]  J. Zegenhagen,et al.  Two-Site Adsorption Model for the (√3 × √3)-R30° Dodecanethiolate Lattice on Au(111) Surfaces , 2006 .

[23]  Tomohiro Hayashi,et al.  First-principles theoretical study of alkylthiolate adsorption on Au(1 1 1) , 2002 .

[24]  J. Yates,et al.  Nondissociative chemisorption of short chain alkanethiols on Au(111). , 2005, The journal of physical chemistry. B.

[25]  Q. Chi,et al.  Assembly dynamics and detailed structure of 1-propanethiol monolayers on Au(111) surfaces observed real time by in situ STM. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[26]  J. Yates,et al.  Gold-adatom-mediated bonding in self-assembled short-chain alkanethiolate species on the Au(111) surface. , 2006, Physical review letters.