A prospective clinical study with a random allocation of 47 patients to three different functional appliance groups was established and compared with a slightly younger control group over a 9-month period. The cephalometric hard tissue changes were assessed in relation to the soft tissue changes produced and the patients were also assessed by three-dimensional (3D) laser scanning of the facial soft tissues. Each 'averaged' appliance group scan was compared with the 'averaged' control group face. Statistically and clinically significant changes occurred in the group treated with the Twin Block appliance, and to a lesser extent in the group treated with the Bionator appliance. No statistically significant facial soft tissue changes could be demonstrated in the Bass appliance group. Upper lip position remained stable despite the significant overjet reduction attained in the three appliance groups. Lower lip protrusion (up to 3.8 mm), lower lip length (up to 4.0 mm), and soft tissue lower and total face height increased significantly in all appliance groups by varying amounts. The long-term effect of these changes needs to be fully evaluated. The laser scanning system was found to be a sensitive and accurate method of quantitatively assessing small changes in the soft tissue facial form. Significant changes of the facial tissues in the transverse plane were highlighted by this technique.