Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis
暂无分享,去创建一个
Sudhir Srivastava | Lynn M. Schriml | Cheng Yan | Ying Hu | Sari Ward | Daniel J. Crichton | Heather Kincaid | Raja Mazumder | Yang Pan | Warren A. Kibbe | Elvira Mitraka | Tsung-Jung Wu | Qingrong Chen | Maureen Colbert | Richard P. Finney | Daoud M. Meerzaman | Krista Smith | R. Mazumder | W. Kibbe | Ying Hu | Qingrong Chen | L. Schriml | D. Crichton | S. Ward | Elvira Mitraka | S. Srivastava | D. Meerzaman | R. Finney | Krista Smith | C. Yan | Yang Pan | H. Kincaid | M. Colbert | Tsung-Jung Wu | Sari Ward
[1] C. Compton,et al. The American Joint Committee on Cancer: the 7th Edition of the AJCC Cancer Staging Manual and the Future of TNM , 2010, Annals of Surgical Oncology.
[2] L. Sobin,et al. TNM classification of malignant tumors, fifth edition (1997) , 1997, Cancer.
[3] K. Kinzler,et al. Cancer Genome Landscapes , 2013, Science.
[4] E. Friedberg,et al. DNA Repair and Mutagenesis , 2006 .
[5] Benjamin J. Raphael,et al. Mutational landscape and significance across 12 major cancer types , 2013, Nature.
[6] Mingming Jia,et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer , 2014, Nucleic Acids Res..
[7] Peilin Jia,et al. Patterns and processes of somatic mutations in nine major cancers , 2014, BMC Medical Genomics.
[8] Mark A. Ragan,et al. Automatic, context-specific generation of Gene Ontology slims , 2010, BMC Bioinformatics.
[9] S. Leff. What is Cancer , 1970 .
[10] L. Liotta,et al. Cancer cell invasion and metastasis. , 1992, Scientific American.
[11] Joshua M. Stuart,et al. The Cancer Genome Atlas Pan-Cancer analysis project , 2013, Nature Genetics.
[12] Olivier Bodenreider,et al. The Unified Medical Language System (UMLS): integrating biomedical terminology , 2004, Nucleic Acids Res..
[13] Michael P. Schroeder,et al. IntOGen-mutations identifies cancer drivers across tumor types , 2013, Nature Methods.
[14] S. Elmore. Apoptosis: A Review of Programmed Cell Death , 2007, Toxicologic pathology.
[15] L Libenson,et al. On the definition, cause and nomenclature of cancer. , 1978, Medical hypotheses.
[16] Gary D Bader,et al. International network of cancer genome projects , 2010, Nature.
[17] Daniel J. Crichton,et al. A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE) , 2014, Database J. Biol. Databases Curation.
[18] F B ROGERS,et al. Medical Subject Headings , 1948, Nature.
[19] J. Mesirov,et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.
[20] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[21] R. Verhaak,et al. The Pan-Cancer Analysis of Pseudogene Expression Reveals Biologically and Clinically Relevant Tumour Subtypes , 2014, Nature Communications.
[22] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[23] Gang Fu,et al. Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data , 2014, Nucleic Acids Res..
[24] D. Carter. TNM Classification of Malignant Tumors , 1998 .
[25] J. Bard,et al. Ontologies in biology: design, applications and future challenges , 2004, Nature Reviews Genetics.
[26] Early Detection Research Network in the US , 1999, Disease markers.
[27] S A Forbes,et al. The Catalogue of Somatic Mutations in Cancer (COSMIC) , 2008, Current protocols in human genetics.
[28] Xiaoming Zeng,et al. International Classification of Diseases, 10th Revision: It's Coming, Ready or Not , 2011, The health care manager.
[29] Benjamin J. Raphael,et al. Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin , 2014, Cell.
[30] A. Sudhakar,et al. History of Cancer, Ancient and Modern Treatment Methods. , 2009, Journal of cancer science & therapy.
[31] klaguia. International Network of Cancer Genome Projects , 2010 .
[32] Yu Fan,et al. BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis , 2015, Database J. Biol. Databases Curation.
[33] L. Chin,et al. Making sense of cancer genomic data. , 2011, Genes & development.
[34] G. Evan,et al. Proliferation, cell cycle and apoptosis in cancer , 2001, Nature.
[35] B. Kennedy,et al. Cancer staging. , 1979, JAMA.
[36] S. Robboy,et al. Progress in medical information management. Systematized nomenclature of medicine (SNOMED). , 1980, JAMA.
[37] Prahlad T. Ram,et al. A pan-cancer proteomic perspective on The Cancer Genome Atlas , 2014, Nature Communications.
[38] James E. Klaunig,et al. Oxidative Stress and Oxidative Damage in Carcinogenesis , 2010, Toxicologic pathology.
[39] Frédérique Penault-Llorca,et al. Promising pre-clinical validation of targeted radionuclide therapy using a [131I] labelled iodoquinoxaline derivative for an effective melanoma treatment , 2009 .
[40] R. Lothe,et al. Transcriptome instability as a molecular pan-cancer characteristic of carcinomas , 2014, BMC Genomics.
[41] F. Marincola,et al. Cancer classification using the Immunoscore: a worldwide task force , 2012, Journal of Translational Medicine.
[42] L. Sobin,et al. TNM Classification of Malignant Tumours , 1987, UICC International Union Against Cancer.
[43] R. Mazumder,et al. Human germline and pan-cancer variomes and their distinct functional profiles , 2014, Nucleic acids research.
[44] M. Peter,et al. Programmed cell death: Apoptosis meets necrosis , 2011, Nature.
[45] G. Majno,et al. Apoptosis, oncosis, and necrosis. An overview of cell death. , 1995, The American journal of pathology.
[46] Daniel L. Rubin,et al. Biomedical ontologies: a functional perspective , 2007, Briefings Bioinform..
[47] Syed Haider,et al. International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data , 2011, Database J. Biol. Databases Curation.
[48] Peter K. L. Ng,et al. What is Cancer? , 2012 .
[49] Henry Z. Montes,et al. TNM Classification of Malignant Tumors, 7th edition , 2010 .