Cotton RSG2 Mediates Plant Resistance against Verticillium dahliae by miR482b Regulation

Simple Summary Cotton is an important economic crop, but its production is constrained by various biotic and abiotic stresses. Verticillium wilt caused by Verticillium dahliae is a major factor limiting cotton yield, causing significant losses in both quantity and quality. In plant resistance research, miRNAs are considered important regulatory factors, and the miR482 family is closely related to plant resistance. Typically, this family can target NBS-LRR genes to participate in cotton’s defense response to Verticillium wilt, but the specific molecular mechanisms still need further study. This study revealed the mechanism of ghr-miR482b and its target gene GhRSG2 in cotton’s resistance to Verticillium wilt through molecular biology and biochemistry, providing new ideas and candidate genes for breeding cotton varieties resistant to Verticillium wilt and a reference for the disease-resistant breeding of other crops, thereby improving agricultural productivity, reducing pesticide use, and promoting sustainable agriculture. Abstract Cotton Verticillium wilt, mainly caused by Verticillium dahliae, has a serious impact on the yield and quality of cotton fiber. Many microRNAs (miRNAs) have been identified to participate in plant resistance to V. dahliae infection, but the exploration of miRNA’s function mechanism in plant defense is needed. Here, we demonstrate that the ghr-miR482b-GhRSG2 module mediates cotton plant resistance to V. dahliae infection. Based on the mRNA degradation data and GUS fusion experiments, ghr-miR482b directedly bonds to GhRSG2 mRNA to lead to its degradation. The knockdown and overexpression of ghr-miR482b through virus-induced gene silencing strategies enhanced (decreased by 0.39-fold in disease index compared with the control) and weakened (increased by 0.46-fold) the plant resistance to V. dahliae, respectively. In addition, silencing GhRSG2 significantly increased (increased by 0.93-fold in disease index) the plant sensitivity to V. dahliae compared with the control plants treated with empty vector. The expression levels of two SA-related disease genes, GhPR1 and GhPR2, significantly decreased in GhRSG2-silenced plants by 0.71 and 0.67 times, respectively, and in ghr-miR482b-overexpressed (OX) plants by 0.59 and 0.75 times, respectively, compared with the control, whereas the expression levels of GhPR1 and GhPR2 were significantly increased by 1.21 and 2.59 times, respectively, in ghr-miR482b knockdown (KD) plants. In sum, the ghr-miR482b-GhRSG2 module participates in the regulation of plant defense against V. dahliae by inducing the expression of PR1 and PR2 genes.

[1]  J. Cui,et al.  New insight into the molecular mechanism of miR482/2118 during plant resistance to pathogens , 2022, Frontiers in Plant Science.

[2]  Yushi Luan,et al.  SlmiR482e-5p regulates tomato resistance to Phytophthora infestans infection along with slmiR482e-3p via sllncRNA39298-mediated inhibition , 2022, Physiological and Molecular Plant Pathology.

[3]  Jiahe Wu,et al.  Cotton miR319b-Targeted TCP4-Like Enhances Plant Defense Against Verticillium dahliae by Activating GhICS1 Transcription Expression , 2022, Frontiers in Plant Science.

[4]  Peng Wang,et al.  Cotton miR393-TIR1 Module Regulates Plant Defense Against Verticillium dahliae via Auxin Perception and Signaling , 2022, Frontiers in Plant Science.

[5]  Shuangxia Jin,et al.  CRISPR/Cas9‐mediated saturated mutagenesis of the cotton MIR482 family for dissecting the functionality of individual members in disease response , 2022, Plant direct.

[6]  Yucheng Li,et al.  A Cotton Lignin Biosynthesis Gene, GhLAC4, Fine-Tuned by ghr-miR397 Modulates Plant Resistance Against Verticillium dahliae , 2021, Frontiers in Plant Science.

[7]  J. Zhai,et al.  MicroRNA482/2118, a miRNA superfamily essential for both disease resistance and plant development. , 2021, The New phytologist.

[8]  Jie Sun,et al.  Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways , 2021, Frontiers in Plant Science.

[9]  M. Schmid,et al.  miRNA Mediated Regulation and Interaction between Plants and Pathogens , 2021, International journal of molecular sciences.

[10]  Lili Huang,et al.  Vm‐milR37 contributes to pathogenicity by regulating glutathione peroxidase gene VmGP in Valsa mali , 2020, Molecular plant pathology.

[11]  D. Llewellyn,et al.  Expansion of MIR482/2118 by a Class II transposable element in cotton. , 2020, The Plant journal : for cell and molecular biology.

[12]  Baohong Zhang,et al.  Integrated small RNA and mRNA expression profiles reveal miRNAs and their target genes in response to Aspergillus flavus growth in peanut seeds , 2020, BMC Plant Biology.

[13]  Jiahe Wu,et al.  The ghr-miR164 and GhNAC100 modulate cotton plant resistance against Verticillium dahlia. , 2020, Plant science : an international journal of experimental plant biology.

[14]  Wei Gao,et al.  GbMPK3 overexpression increases cotton sensitivity to Verticillium dahliae by regulating salicylic acid signaling. , 2020, Plant science : an international journal of experimental plant biology.

[15]  F. Liu,et al.  GhWRKY70D13 Regulates Resistance to Verticillium dahliae in Cotton Through the Ethylene and Jasmonic Acid Signaling Pathways , 2020, Frontiers in Plant Science.

[16]  Zuoren Yang,et al.  The cotton miR477-CBP60A module participates in plant defence against Verticillium dahliae. , 2019, Molecular plant-microbe interactions : MPMI.

[17]  I. Dubery,et al.  miR393 regulation of lectin receptor-like kinases associated with LPS perception in Arabidopsis thaliana. , 2019, Biochemical and biophysical research communications.

[18]  Jiahe Wu,et al.  Cotton WATs Modulate SA Biosynthesis and Local Lignin Deposition Participating in Plant Resistance Against Verticillium dahliae , 2019, Front. Plant Sci..

[19]  Guan-Zhu Han Origin and evolution of the plant immune system. , 2019, The New phytologist.

[20]  Hongkun Zheng,et al.  Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense , 2018, Nature Genetics.

[21]  Rui Xia,et al.  Small RNAs, emerging regulators critical for the development of horticultural traits , 2018, Horticulture Research.

[22]  Guanglei Yang,et al.  Comparative transcriptome analysis shows the defense response networks regulated by miR482b , 2018, Plant Cell Reports.

[23]  D. Baulcombe,et al.  Enhanced resistance to bacterial and oomycete pathogens by short tandem target mimic RNAs in tomato , 2018, Proceedings of the National Academy of Sciences.

[24]  Hongwei Zhao,et al.  Osa‐miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae , 2018, The Plant journal : for cell and molecular biology.

[25]  D. Weigel,et al.  The MicroRNA miR773 Is Involved in the Arabidopsis Immune Response to Fungal Pathogens. , 2018, Molecular plant-microbe interactions : MPMI.

[26]  S. Griffiths-Jones,et al.  Small RNAs: Big Impact on Plant Development. , 2017, Trends in plant science.

[27]  Peer Bork,et al.  20 years of the SMART protein domain annotation resource , 2017, Nucleic Acids Res..

[28]  Xinyi Yu,et al.  Malus hupehensis miR168 Targets to ARGONAUTE1 and Contributes to the Resistance against Botryosphaeria dothidea Infection by Altering Defense Responses , 2017, Plant & cell physiology.

[29]  Jiahe Wu,et al.  Functional characterization of a novel jasmonate ZIM-domain interactor (NINJA) from upland cotton (Gossypium hirsutum). , 2017, Plant physiology and biochemistry : PPB.

[30]  Chungui Lu,et al.  The wheat NB‐LRR gene TaRCR1 is required for host defence response to the necrotrophic fungal pathogen Rhizoctonia cerealis , 2017, Plant biotechnology journal.

[31]  Rong-Long Pan,et al.  Overexpression of a novel peanut NBS‐LRR gene AhRRS5 enhances disease resistance to Ralstonia solanacearum in tobacco , 2016, Plant biotechnology journal.

[32]  B. Meyers,et al.  Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses. , 2016, Molecular plant-microbe interactions : MPMI.

[33]  Tianzhen Zhang,et al.  Constitutive expression of a novel antimicrobial protein, Hcm1, confers resistance to both Verticillium and Fusarium wilts in cotton , 2016, Scientific Reports.

[34]  Robert D. Finn,et al.  The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..

[35]  Q. Yang,et al.  Overexpression of potato miR482e enhanced plant sensitivity to Verticillium dahliae infection. , 2015, Journal of integrative plant biology.

[36]  B. Meyers,et al.  Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants , 2015, Molecular biology and evolution.

[37]  F. Shen,et al.  Identification of miRNAs and Their Targets in Cotton Inoculated with Verticillium dahliae by High-Throughput Sequencing and Degradome Analysis , 2015, International Journal of Molecular Sciences.

[38]  R. Jain,et al.  Tospo viral infection instigates necrosis and premature senescence by micro RNA controlled programmed cell death in Vigna unguiculata , 2014 .

[39]  O. Voinnet,et al.  The Arabidopsis miR472-RDR6 Silencing Pathway Modulates PAMP- and Effector-Triggered Immunity through the Post-transcriptional Control of Disease Resistance Genes , 2014, PLoS pathogens.

[40]  D. Llewellyn,et al.  miR482 Regulation of NBS-LRR Defense Genes during Fungal Pathogen Infection in Cotton , 2013, PloS one.

[41]  Robert D. Finn,et al.  InterPro in 2011: new developments in the family and domain prediction database , 2011, Nucleic acids research.

[42]  Donna M Bond,et al.  A MicroRNA Superfamily Regulates Nucleotide Binding Site–Leucine-Rich Repeats and Other mRNAs[W][OA] , 2012, Plant Cell.

[43]  Xuemei Chen,et al.  Effective Small RNA Destruction by the Expression of a Short Tandem Target Mimic in Arabidopsis[C][W] , 2012, Plant Cell.

[44]  B. Baker,et al.  MicroRNA regulation of plant innate immune receptors , 2012, Proceedings of the National Academy of Sciences.

[45]  Gary Stacey,et al.  MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. , 2011, Genes & development.

[46]  F. Gao,et al.  A Glutamic Acid-Rich Protein Identified in Verticillium dahliae from an Insertional Mutagenesis Affects Microsclerotial Formation and Pathogenicity , 2010, PloS one.

[47]  O. Yu,et al.  Misexpression of miR482, miR1512, and miR1515 Increases Soybean Nodulation1[W][OA] , 2010, Plant Physiology.

[48]  S. Dinesh-Kumar,et al.  Plant NB-LRR immune receptors: from recognition to transcriptional reprogramming. , 2008, Cell host & microbe.

[49]  Brody J Deyoung,et al.  Plant NBS-LRR proteins in pathogen sensing and host defense , 2006, Nature Immunology.

[50]  D. Bartel,et al.  MicroRNAS and their regulatory roles in plants. , 2006, Annual review of plant biology.

[51]  Jonathan D. G. Jones,et al.  A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling , 2006, Science.

[52]  Amy E. Keating,et al.  Paircoil2: improved prediction of coiled coils from sequence , 2006, Bioinform..

[53]  Vincent L. Chiang,et al.  Novel and Mechanical Stress–Responsive MicroRNAs in Populus trichocarpa That Are Absent from Arabidopsisw⃞ , 2005, The Plant Cell Online.

[54]  Blake C. Meyers,et al.  Genome-Wide Analysis of NBS-LRR–Encoding Genes in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.009308. , 2003, The Plant Cell Online.

[55]  B. Reinhart,et al.  MicroRNAs in plants. , 2002, Genes & development.

[56]  B. Sobral,et al.  Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide‐binding superfamily , 1999 .