Organization and function of the 3 D genome
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[1] Neva C. Durand,et al. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping , 2014, Cell.
[2] D. Tremethick,et al. Higher-Order Structures of Chromatin: The Elusive 30 nm Fiber , 2007, Cell.
[3] W. Bickmore,et al. Single-Cell Dynamics of Genome-Nuclear Lamina Interactions , 2013, Cell.
[4] M. Kladde,et al. Interaction between transcription regulatory regions of prolactin chromatin. , 1993, Science.
[5] Ivan Ovcharenko,et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions. , 2007, Genome research.
[6] Michael Y Tolstorukov,et al. Nature and function of insulator protein binding sites in the Drosophila genome , 2012, Genome research.
[7] Pedro P. Rocha,et al. CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation , 2015, Science.
[8] S. Hannenhalli,et al. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development , 2008, Development.
[9] O. Delaneau,et al. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans , 2015, Cell.
[10] Jennifer A. Mitchell,et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells , 2010, Nature Genetics.
[11] D. Reinberg,et al. CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53 , 2014, Genes & development.
[12] Nir Friedman,et al. Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C , 2015, Cell.
[13] Peng Yin,et al. Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes , 2015, Nature Communications.
[14] Giacomo Cavalli,et al. The Role of Chromosome Domains in Shaping the Functional Genome , 2015, Cell.
[15] Wouter de Laat,et al. A Regulatory Archipelago Controls Hox Genes Transcription in Digits , 2011, Cell.
[16] J. Dekker,et al. Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription , 2014, Cell.
[17] Robert S. Illingworth,et al. Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells , 2014, Science.
[18] Benjamin Leblanc,et al. Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila , 2011, Cell.
[19] P. Flicek,et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. , 2010, Molecular cell.
[20] Neva C. Durand,et al. Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture , 2016, Proceedings of the National Academy of Sciences.
[21] Bas van Steensel,et al. Genome Architecture: Domain Organization of Interphase Chromosomes , 2013, Cell.
[22] Philip A. Ewels,et al. Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C , 2015, Nature Genetics.
[23] G. Schroth,et al. Cohesin-mediated interactions organize chromosomal domain architecture , 2013, The EMBO journal.
[24] Job Dekker,et al. Organization of the Mitotic Chromosome , 2013, Science.
[25] Matteo Pellegrini,et al. Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization. , 2013, Cell stem cell.
[26] Amos Tanay,et al. Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila. , 2014, Cell reports.
[27] D. Duboule,et al. A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs , 2013, Science.
[28] Lee E. Edsall,et al. A map of the cis-regulatory sequences in the mouse genome , 2012, Nature.
[29] J. Lippincott-Schwartz,et al. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.
[30] Dylan J. Taatjes,et al. The Mediator complex: a central integrator of transcription , 2015, Nature Reviews Molecular Cell Biology.
[31] N. Galjart,et al. CTCF regulates cell cycle progression of αβ T cells in the thymus , 2008, The EMBO journal.
[32] Nicolas Tanguy-le-Gac,et al. DNA Dynamics during Early Double-Strand Break Processing Revealed by Non-Intrusive Imaging of Living Cells , 2014, PLoS genetics.
[33] S. Rehen,et al. Chromosomal variation in neurons of the developing and adult mammalian nervous system , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[34] Ilya M. Flyamer,et al. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains , 2016, Genome research.
[35] T. Mikkelsen,et al. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites , 2007, Proceedings of the National Academy of Sciences.
[36] Michael Q. Zhang,et al. CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function , 2015, Cell.
[37] V. Corces,et al. CTCF: an architectural protein bridging genome topology and function , 2014, Nature Reviews Genetics.
[38] L. Mirny,et al. High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome , 2013, Science.
[39] A. Pombo,et al. Three-dimensional genome architecture: players and mechanisms , 2015, Nature Reviews Molecular Cell Biology.
[40] Wouter de Laat,et al. CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. , 2006, Genes & development.
[41] P. Pevzner,et al. Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps , 2005, Science.
[42] Philip A. Ewels,et al. Global Reorganization of the Nuclear Landscape in Senescent Cells , 2015, Cell reports.
[43] Jennifer E. Phillips-Cremins,et al. Chromatin insulators: linking genome organization to cellular function. , 2013, Molecular cell.
[44] D. Pinkel,et al. Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocations of chromosome 4. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[45] Job Dekker,et al. Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe , 2014, Nature.
[46] Chee Seng Chan,et al. CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells , 2011, Nature Genetics.
[47] Matteo Pellegrini,et al. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. , 2014, Molecular cell.
[48] B. Chadwick,et al. The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome. , 2012, Human molecular genetics.
[49] Boris Lenhard,et al. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments , 2013, Genome research.
[50] Neva C. Durand,et al. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes , 2015, Proceedings of the National Academy of Sciences.
[51] T. Richmond,et al. X-ray structure of a tetranucleosome and its implications for the chromatin fibre , 2005, Nature.
[52] Leonid A. Mirny,et al. Super-resolution imaging reveals distinct chromatin folding for different epigenetic states , 2015, Nature.
[53] E. Schierenberg,et al. The chromatin insulator CTCF and the emergence of metazoan diversity , 2012, Proceedings of the National Academy of Sciences.
[54] Antonin Morillon,et al. Gene loops juxtapose promoters and terminators in yeast , 2004, Nature Genetics.
[55] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[56] Jennifer A. Erwin,et al. Locus-specific targeting to the X chromosome revealed by the RNA interactome of CTCF. , 2015, Molecular cell.