Proteomic Approach for Characterization of Hop-Inducible Proteins in Lactobacillus brevis

ABSTRACT Resistance to hops is a prerequisite for the capability of lactic acid bacteria to grow in beer and thus cause beer spoilage. Bactericidal hop compounds, mainly iso-α-acids, are described as ionophores which exchange H+ for cellular divalent cations, e.g., Mn2+, and thus dissipate ion gradients across the cytoplasmic membrane. The acid stress response of Lactobacillus brevis TMW 1.465 and hop adaptation in its variant L. brevis TMW 1.465A caused changes at the level of metabolism, membrane physiology, and cell wall composition. To identify the basis for these changes, a proteomic approach was taken. The experimental design allowed the discrimination of acid stress and hop stress. A strategy for improved protein identification enabled the identification of 84% of the proteins investigated despite the lack of genome sequence data for this strain. Hop resistance in L. brevis TMW 1.465A implies mechanisms to cope with intracellular acidification, mechanisms for energy generation and economy, genetic information fidelity, and enzyme functionality. Interestingly, the majority of hop-regulated enzymes are described as manganese or divalent cation dependent. Regulation of the manganese level allows fine-tuning of the metabolism, which enables a rapid response to environmental (stress) conditions. The hop stress response indicates adaptations shifting the metabolism into an energy-saving mode by effective substrate conversion and prevention of exhaustive protein de novo synthesis. The findings further demonstrate that hop stress in bacteria not only is associated with proton motive force depletion but obviously implies divalent cation limitation.

[1]  Pier Giorgio Righetti,et al.  Immobilized pH gradients , 2009, Electrophoresis.

[2]  R. Vogel,et al.  Characterization of a Highly Hop-Resistant Lactobacillus brevis Strain Lacking Hop Transport , 2006, Applied and Environmental Microbiology.

[3]  J. A. Taylor,et al.  Informatics for protein identification by mass spectrometry. , 2005, Methods.

[4]  K. Suzuki,et al.  Comparative analysis of conserved genetic markers and adjacent DNA regions identified in beer‐spoilage lactic acid bacteria , 2004, Letters in applied microbiology.

[5]  J. Yates,et al.  Shotgun proteomics of Methanococcus jannaschii and insights into methanogenesis. , 2004, Journal of proteome research.

[6]  W. N. Konings,et al.  Beer spoilage bacteria and hop resistance. , 2003, International journal of food microbiology.

[7]  M. Maguire,et al.  Emerging themes in manganese transport, biochemistry and pathogenesis in bacteria. , 2003, FEMS microbiology reviews.

[8]  F. Bossa,et al.  Stability and oligomerization of recombinant GadX, a transcriptional activator of the Escherichia coli glutamate decarboxylase system. , 2003, Biochimica et biophysica acta.

[9]  B. Tudek Imidazole ring-opened DNA purines and their biological significance. , 2003, Journal of biochemistry and molecular biology.

[10]  S. Milewski Glucosamine-6-phosphate synthase--the multi-facets enzyme. , 2002, Biochimica et biophysica acta.

[11]  H. W. Veen,et al.  Beer spoilage bacteria and hop resistance in Lactobacillus brevis , 2002 .

[12]  A. Burlingame,et al.  Functional Assignment of the 20 S Proteasome from Trypanosoma brucei Using Mass Spectrometry and New Bioinformatics Approaches* , 2001, The Journal of Biological Chemistry.

[13]  P Dupree,et al.  Quantitative and reproducible two‐dimensional gel analysis using Phoretix 2D Full , 2001, Electrophoresis.

[14]  N. Hayashi,et al.  Molecular cloning of a putative divalent-cation transporter gene as a new genetic marker for the identification of Lactobacillus brevis strains capable of growing in beer , 2001, Applied Microbiology and Biotechnology.

[15]  P. Bork,et al.  Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching. , 2001, Analytical chemistry.

[16]  H. Matsuzawa,et al.  Some Lactobacillusl-Lactate Dehydrogenases Exhibit Comparable Catalytic Activities for Pyruvate and Oxaloacetate , 2001, Journal of bacteriology.

[17]  A. Görg,et al.  The current state of two‐dimensional electrophoresis with immobilized pH gradients , 2000, Electrophoresis.

[18]  D. N. Perkins,et al.  Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.

[19]  Michael Y. Galperin,et al.  A superfamily of metalloenzymes unifies phosphopentomutase and cofactor‐independent phosphoglycerate mutase with alkaline phosphatases and sulfatases , 1998, Protein science : a publication of the Protein Society.

[20]  D. Hochstrasser,et al.  Extraction of membrane proteins by differential solubilization for separation using two‐dimensional gel electrophoresis , 1998, Electrophoresis.

[21]  A. Goldberg,et al.  Proteolytic Activity of the ATP-dependent Protease HslVU Can Be Uncoupled from ATP Hydrolysis* , 1997, The Journal of Biological Chemistry.

[22]  T. Ross,et al.  Acid habituation of Escherichia coli and the potential role of cyclopropane fatty acids in low pH tolerance. , 1997, International journal of food microbiology.

[23]  J. A. Taylor,et al.  Sequence database searches via de novo peptide sequencing by tandem mass spectrometry. , 1997, Rapid communications in mass spectrometry : RCM.

[24]  J E Visick,et al.  Repair, refold, recycle: how bacteria can deal with spontaneous and environmental damage to proteins , 1995, Molecular microbiology.

[25]  J. Yates,et al.  Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. , 1995, Analytical chemistry.

[26]  A. Dickson Basic protein and peptide protocols (methods in molecular biology vol. 32): edited by John M. Walker, Humana Press, 1994. $59.50 (xii + 490 pages) ISBN 0 896 03269 8 , 1994 .

[27]  J. Walker Basic protein and peptide protocols , 1994 .

[28]  W. J. Simpson CAMBRIDGE PRIZE LECTURE. STUDIES ON THE SENSITIVITY OF LACTIC ACID BACTERIA TO HOP BITTER ACIDS , 1993 .

[29]  W. Hammes,et al.  Utilisation of maltose and glucose by lactobacilli isolated from sourdough , 1993 .

[30]  Robert H. White,et al.  Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[31]  J. Alonso,et al.  Purification and properties of the RecR protein from Bacillus subtilis 168. , 1993, The Journal of biological chemistry.

[32]  W. J. Simpson,et al.  Selection of beer‐spoilage lactic acid bacteria and induction of their ability to grow in beer , 1992 .

[33]  W. H. Elliott,et al.  Data for Biochemical Research , 1986 .

[34]  F. Archibald,et al.  Manganese acquisition by Lactobacillus plantarum , 1984, Journal of bacteriology.

[35]  E. Freese,et al.  Control of metabolite secretion in Bacillus subtilis. , 1973, Journal of general microbiology.

[36]  P. Hoffee,et al.  Purification and properties of purine nucleoside phosphorylase from Salmonella typhimurium. , 1973, The Journal of biological chemistry.

[37]  H. Albrechtsen,et al.  Regulation of the synthesis of nucleoside catabolic enzymes in Escherichia coli: Further analysis of a deo OC mutant strain , 2004, Molecular and General Genetics MGG.