CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing
暂无分享,去创建一个
Kornel Labun | Tessa G. Montague | Håkon Tjeldnes | Yamila N. Torres cleuren | Eivind Valen | Eivind Valen | Maximilian Krause | Y. T. Cleuren | Kornel Labun | Håkon Tjeldnes | M. Krause
[1] Tetsushi Sakuma,et al. Establishment of expanded and streamlined pipeline of PITCh knock-in – a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh-TG and PITCh-KIKO , 2017, Bioengineered.
[2] A. Regev,et al. RNA targeting with CRISPR-Cas 13 a , 2017 .
[3] Aviv Regev,et al. RNA targeting with CRISPR–Cas13 , 2017, Nature.
[4] Aviv Regev,et al. Nucleic acid detection with CRISPR-Cas13a/C2c2 , 2017, Science.
[5] Sungroh Yoon,et al. Deep learning improves prediction of CRISPR–Cpf1 guide RNA activity , 2018, Nature Biotechnology.
[6] G. Church,et al. Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach , 2015, Nature Methods.
[7] Meagan E. Sullender,et al. Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9 , 2015, Nature Biotechnology.
[8] James A. Gagnon,et al. Whole-organism lineage tracing by combinatorial and cumulative genome editing , 2016, Science.
[9] S. Konermann,et al. Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors , 2018, Cell.
[10] Christopher M. Vockley,et al. RNA-guided gene activation by CRISPR-Cas9-based transcription factors , 2013, Nature Methods.
[11] Charles E. Vejnar,et al. CRISPRscan: designing highly efficient sgRNAs for CRISPR/Cas9 targeting in vivo , 2015, Nature Methods.
[12] Kornel Labun,et al. Accurate analysis of genuine CRISPR editing events with ampliCan. , 2019, Genome research.
[13] Lei S. Qi,et al. The New State of the Art: Cas9 for Gene Activation and Repression , 2015, Molecular and Cellular Biology.
[14] David K. Gifford,et al. Predictable and precise template-free CRISPR editing of pathogenic variants , 2018, Nature.
[15] Eli J. Fine,et al. DNA targeting specificity of RNA-guided Cas9 nucleases , 2013, Nature Biotechnology.
[16] D. Stainier,et al. Genetic compensation triggered by mutant mRNA degradation , 2019, Nature.
[17] Kira S. Makarova,et al. Cas13b is a Type VI-B CRISPR-associated RNA-Guided RNase differentially regulated by accessory proteins Csx27 and Csx28 , 2016, bioRxiv.
[18] Tessa G Montague,et al. Internal guide RNA interactions interfere with Cas9-mediated cleavage , 2016, Nature Communications.
[19] Edward M. Callaway,et al. In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration , 2016, Nature.
[20] Luke A. Gilbert,et al. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes , 2013, Cell.
[21] Clifford A. Meyer,et al. Sequence determinants of improved CRISPR sgRNA design , 2015, Genome research.
[22] Tetsushi Sakuma,et al. MMEJ-assisted gene knock-in using TALENs and CRISPR-Cas9 with the PITCh systems , 2015, Nature Protocols.
[23] Sergey A. Shmakov,et al. Cas13b is a Type VI-B CRISPR-associated RNA-Guided RNase differentially regulated by accessory proteins Csx27 and Csx28 , 2016, bioRxiv.
[24] Yarden Katz,et al. Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system , 2013, Cell Research.
[25] Le Cong,et al. Multiplex Genome Engineering Using CRISPR/Cas Systems , 2013, Science.
[26] Eric S. Lander,et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector , 2016, Science.
[27] Max J. Kellner,et al. RNA editing with CRISPR-Cas13 , 2017, Science.
[28] Peter F. Stadler,et al. ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology.
[29] Sergey A. Shmakov,et al. Cas 13 b Is a Type VIB CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx 27 and Csx 28 , 2017 .
[30] Morgan L. Maeder,et al. CRISPR RNA-guided activation of endogenous human genes , 2013, Nature Methods.
[31] Thualfeqar Almohanna. RNA Editing with CRISPR Cas-13 , 2021, Academia Letters.
[32] F. Sedlazeck,et al. Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants, and mutations , 2019, bioRxiv.
[33] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.
[34] Tessa G. Montague,et al. Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs , 2014, PloS one.
[35] Sergey A. Shmakov,et al. CRISPR EVOLUTION C 2 c 2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector , 2016 .
[36] Y. Ebenstein,et al. Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH) , 2018, Nucleic acids research.
[37] John E. Dueber,et al. CRISPR-guided DNA polymerases enable diversification of all nucleotides in a tunable window , 2018, Nature.