Computational Bacterial Genome-Wide Analysis of Phylogenetic Profiles Reveals Potential Virulence Genes of Streptococcus agalactiae
暂无分享,去创建一个
Enrico Coiera | Vitali Sintchenko | Ruiting Lan | Fanrong Kong | Gwendolyn L. Gilbert | E. Coiera | V. Sintchenko | R. Lan | F. Lin | F. Kong | G. Gilbert | Frank Po-Yen Lin
[1] E. Tuomanen,et al. Vancomycin Stress Response in a Sensitive and a Tolerant Strain of Streptococcus pneumoniae , 2005, Journal of bacteriology.
[2] I. Sutcliffe,et al. Bioinformatic insights into the biosynthesis of the Group B carbohydrate in Streptococcus agalactiae. , 2008, Microbiology.
[3] Carmen Buchrieser,et al. Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease , 2002, Molecular microbiology.
[4] Jaideep P. Sundaram,et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] A. Schuchat,et al. A population-based comparison of strategies to prevent early-onset group B streptococcal disease in neonates. , 2002, The New England journal of medicine.
[6] Arturo Casadevall,et al. Host-Pathogen Interactions: Redefining the Basic Concepts of Virulence and Pathogenicity , 1999, Infection and Immunity.
[7] A. Schuchat,et al. Perinatal infections due to group B streptococci. , 2004, Obstetrics and gynecology.
[8] Yu Zheng,et al. Phylogenetic detection of conserved gene clusters in microbial genomes , 2005, BMC Bioinformatics.
[9] V. Nizet,et al. Molecular pathogenesis of neonatal group B streptococcal infection: no longer in its infancy , 2004, Molecular microbiology.
[10] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..
[11] S. Falkow. Molecular Koch's postulates applied to bacterial pathogenicity — a personal recollection 15 years later , 2004, Nature Reviews Microbiology.
[12] Rekha Seshadri,et al. Bacterial Genomics and Pathogen Evolution , 2006, Cell.
[13] A. Casadevall,et al. Host-pathogen interactions: the attributes of virulence. , 2001, The Journal of infectious diseases.
[14] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[15] Jeffrey N. Weiser,et al. The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease , 2008, Nature Reviews Microbiology.
[16] H. Tettelin,et al. Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes. , 2006, Microbiology.
[17] B. Spellerberg,et al. Horizontal gene transfer and host specificity of beta‐haemolytic streptococci: the role of a putative composite transposon containing scpB and lmb , 2001, Molecular microbiology.
[18] D. Relman,et al. Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates , 1996, Clinical microbiology reviews.
[19] Jean-Philippe Vert,et al. A tree kernel to analyse phylogenetic profiles , 2002, ISMB.
[20] Zhenjun Hu,et al. Gene annotation and network inference by phylogenetic profiling , 2006, BMC Bioinformatics.
[21] Robert D. Finn,et al. The Pfam protein families database , 2004, Nucleic Acids Res..
[22] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[23] J. Claverys. A new family of high-affinity ABC manganese and zinc permeases. , 2001, Research in microbiology.
[24] M. Höök,et al. The Collagen-Binding Adhesin Is a Virulence Factor in Staphylococcus aureus Keratitis , 2000, Infection and Immunity.
[25] Young-Kyu Park,et al. Towards pathogenomics: a web-based resource for pathogenicity islands , 2006, Nucleic Acids Res..
[26] W. Benitz. Epidemiology of Invasive Group B Streptococcal Disease in the United States, 1999-2005 , 2009 .
[27] P. Dessen,et al. Comparative Genomics Identifies the Genetic Islands That Distinguish Neisseria meningitidis, the Agent of Cerebrospinal Meningitis, from Other Neisseria Species , 2002, Infection and Immunity.
[28] Ian T. Paulsen,et al. Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[29] Yoshihiro Yamanishi,et al. Protein network inference from multiple genomic data: a supervised approach , 2004, ISMB/ECCB.
[30] E. Brown,et al. Virulence potential of the staphylococcal adhesin CNA in experimental arthritis is determined by its affinity for collagen. , 2004, The Journal of infectious diseases.
[31] Enrico W. Coiera,et al. In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles , 2009, BMC Bioinformatics.
[32] R. Rappuoli,et al. Group B Streptococcus: global incidence and vaccine development , 2006, Nature Reviews Microbiology.
[33] G. Sherlock,et al. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[34] T. Kato,et al. Sequence analysis and characterization of the Porphyromonas gingivalis prtC gene, which expresses a novel collagenase activity , 1992, Journal of bacteriology.
[35] A. E. Hirsh,et al. Protein dispensability and rate of evolution , 2001, Nature.
[36] M. Bokarewa,et al. Staphylococcus aureus: Staphylokinase. , 2006, The international journal of biochemistry & cell biology.
[37] Liang Tong,et al. Bacterial neuraminidase facilitates mucosal infection by participating in biofilm production. , 2006, The Journal of clinical investigation.
[38] E. Tuomanen,et al. Revising the Role of the Pneumococcal vex-vncRS Locus in Vancomycin Tolerance , 2004, Journal of bacteriology.
[39] M. J. Jedrzejas. Pneumococcal Virulence Factors: Structure and Function , 2001, Microbiology and Molecular Biology Reviews.
[40] D. Eisenberg,et al. Localizing proteins in the cell from their phylogenetic profiles. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[41] T. Wassenaar,et al. Bacterial virulence: can we draw the line? , 2001, FEMS microbiology letters.
[42] Fiona S. L. Brinkman,et al. IslandViewer: an integrated interface for computational identification and visualization of genomic islands , 2009, Bioinform..
[43] N. Khardori. Epidemiology of Invasive Group B Streptococcal Disease in the United States, 1999-2005 , 2008 .
[44] W. V. van Wamel,et al. Anti-opsonic properties of staphylokinase. , 2005, Microbes and infection.
[45] R. G. Richards,et al. Analysis of Ebh, a 1.1-Megadalton Cell Wall-Associated Fibronectin-Binding Protein of Staphylococcus aureus , 2002, Infection and Immunity.
[46] W. Schaffner,et al. Evaluation of universal antenatal screening for group B streptococcus. , 2009, The New England journal of medicine.
[47] D. Eisenberg,et al. Use of Logic Relationships to Decipher Protein Network Organization , 2004, Science.
[48] Jon R. Armstrong,et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[49] Brandi L. Cantarel,et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics , 2008, Nucleic Acids Res..