Identification of a cytochrome bc1 - aa3 supercomplex in Rhodobacter sphaeroides.

[1]  B. Garcia,et al.  Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes , 2021, Nature Communications.

[2]  J. Rubinstein,et al.  Cryo-EM structure and kinetics reveal electron transfer by 2D diffusion of cytochrome c in the yeast III-IV respiratory supercomplex , 2020, Proceedings of the National Academy of Sciences.

[3]  A. Stuchebrukhov,et al.  Kinetic advantage of forming respiratory supercomplexes. , 2020, Biochimica et biophysica acta. Bioenergetics.

[4]  P. Brzezinski.  New Structures Reveal Interaction Dynamics in Respiratory Supercomplexes. , 2019, Trends in biochemical sciences.

[5]  R. Gennis,et al.  Active site rearrangement and structural divergence in prokaryotic respiratory oxidases , 2019, Science.

[6]  G. Degliesposti,et al.  Structures of Respiratory Supercomplex I+III2 Reveal Functional and Conformational Crosstalk , 2019, Molecular cell.

[7]  L. Esser,et al.  Crystal structure of bacterial cytochrome bc1 in complex with azoxystrobin reveals a conformational switch of the Rieske iron–sulfur protein subunit , 2019, The Journal of Biological Chemistry.

[8]  C. Ihling,et al.  Cytochrome bcc-aa3 Oxidase Supercomplexes in the Aerobic Respiratory Chain of Streptomyces coelicolor A3(2) , 2019, Journal of Molecular Microbiology and Biotechnology.

[9]  M. Carroni,et al.  Cryo-EM structure of the yeast respiratory supercomplex , 2018, Nature Structural & Molecular Biology.

[10]  J. Rubinstein,et al.  Structure of a functional obligate complex III2IV2 respiratory supercomplex from Mycobacterium smegmatis , 2018, Nature Structural & Molecular Biology.

[11]  J. Hirst.  Open questions: respiratory chain supercomplexes—why are they there and what do they do? , 2018, BMC Biology.

[12]  Jun Yu Li,et al.  An electron transfer path connects subunits of a mycobacterial respiratory supercomplex , 2018, Science.

[13]  R. Gennis,et al.  The electron distribution in the “activated” state of cytochrome c oxidase , 2018, Scientific Reports.

[14]  M. Gray.  Lynn Margulis and the endosymbiont hypothesis: 50 years later , 2017, Molecular biology of the cell.

[15]  David J. Fleet,et al.  cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination , 2017, Nature Methods.

[16]  Wei-Chun Kao,et al.  Rapid Electron Transfer within the III-IV Supercomplex in Corynebacterium glutamicum , 2016, Scientific Reports.

[17]  J. A. Letts,et al.  The architecture of respiratory supercomplexes , 2016, Nature.

[18]  M. Teixeira,et al.  Supramolecular organization of bacterial aerobic respiratory chains: From cells and back. , 2016, Biochimica et biophysica acta.

[19]  J. Hirst,et al.  Kinetic evidence against partitioning of the ubiquinone pool and the catalytic relevance of respiratory-chain supercomplexes , 2014, Proceedings of the National Academy of Sciences.

[20]  J. Enríquez,et al.  Coenzyme Q and the Respiratory Chain: Coenzyme Q Pool and Mitochondrial Supercomplexes , 2014, Molecular Syndromology.

[21]  M. L. Genova,et al.  Mitochondrial respiratory supercomplex association limits production of reactive oxygen species from complex I. , 2013, Antioxidants & redox signaling.

[22]  Timothy J. Donohue,et al.  Global insights into energetic and metabolic networks in Rhodobacter sphaeroides , 2013, BMC Systems Biology.

[23]  C. López-Otín,et al.  Supercomplex Assembly Determines Electron Flux in the Mitochondrial Electron Transport Chain , 2013, Science.

[24]  John M. Berrisford,et al.  Crystal structure of the entire respiratory complex I , 2013, Nature.

[25]  J. Enríquez,et al.  Cells Lacking Rieske Iron-Sulfur Protein Have a Reactive Oxygen Species-Associated Decrease in Respiratory Complexes I and IV , 2011, Molecular and Cellular Biology.

[26]  James Hemp,et al.  Adaptation of aerobic respiration to low O2 environments , 2011, Proceedings of the National Academy of Sciences.

[27]  Jennifer L. Reed,et al.  iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network , 2011, BMC Systems Biology.

[28]  Ville R. I. Kaila,et al.  Proton-coupled electron transfer in cytochrome oxidase. , 2010, Chemical reviews.

[29]  H. Michel,et al.  The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping , 2010, Science.

[30]  H. Michel,et al.  Structure at 1.5 A resolution of cytochrome c(552) with its flexible linker segment, a membrane-anchored protein from Paracoccus denitrificans. , 2010, Acta crystallographica. Section D, Biological crystallography.

[31]  V. P. Shinkarev,et al.  Binding of Imidazole to the Heme of Cytochrome c1 and Inhibition of the bc1 Complex from Rhodobacter sphaeroides , 2010, The Journal of Biological Chemistry.

[32]  M. L. Genova,et al.  Structure and organization of mitochondrial respiratory complexes: a new understanding of an old subject. , 2010, Antioxidants & redox signaling.

[33]  S. Iwata,et al.  Structure of Escherichia coli Succinate:Quinone Oxidoreductase with an Occupied and Empty Quinone-binding Site* , 2009, The Journal of Biological Chemistry.

[34]  F. Daldal,et al.  Demonstration of Short-lived Complexes of Cytochrome c with Cytochrome bc1 by EPR Spectroscopy , 2008, Journal of Biological Chemistry.

[35]  Sozanne R. Solmaz,et al.  Structure of Complex III with Bound Cytochrome c in Reduced State and Definition of a Minimal Core Interface for Electron Transfer* , 2008, Journal of Biological Chemistry.

[36]  Samuel Kaplan,et al.  Postgenomic adventures with Rhodobacter sphaeroides. , 2007, Annual review of microbiology.

[37]  P. Brzezinski,et al.  Design principles of proton-pumping haem-copper oxidases. , 2006, Current opinion in structural biology.

[38]  M. Lundrigan,et al.  Evidence for a cytochrome bcc-aa3 interaction in the respiratory chain of Mycobacterium smegmatis. , 2006, Microbiology.

[39]  A. Mulkidjanian.  Ubiquinol oxidation in the cytochrome bc1 complex: reaction mechanism and prevention of short-circuiting. , 2005, Biochimica et biophysica acta.

[40]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[41]  P. Brzezinski,et al.  Structural elements involved in electron‐coupled proton transfer in cytochrome c oxidase , 2004, FEBS letters.

[42]  N. Watmough,et al.  The bacterial cytochrome cbb3 oxidases. , 2004, Biochimica et biophysica acta.

[43]  B. Ludwig,et al.  Interaction of cytochrome c with cytochrome oxidase: two different docking scenarios. , 2004, Biochimica et biophysica acta.

[44]  C. Bruno,et al.  Respiratory complex III is required to maintain complex I in mammalian mitochondria. , 2004, Molecular cell.

[45]  Samuel Kaplan,et al.  Effects of Oxygen and Light Intensity on Transcriptome Expression in Rhodobacter sphaeroides 2.4.1 , 2004, Journal of Biological Chemistry.

[46]  M. Finel,et al.  Assembly of Respiratory Complexes I, III, and IV into NADH Oxidase Supercomplex Stabilizes Complex I in Paracoccus denitrificans* , 2004, Journal of Biological Chemistry.

[47]  M. Bott,et al.  Purification of a Cytochromebc 1-aa 3 Supercomplex with Quinol Oxidase Activity from Corynebacterium glutamicum , 2003, The Journal of Biological Chemistry.

[48]  S. Iwata,et al.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides. , 2002, Journal of molecular biology.

[49]  S. Kaplan,et al.  Oxygen Adaptation , 2002, The Journal of Biological Chemistry.

[50]  C. Lange,et al.  Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[51]  F. Daldal,et al.  Mobile Cytochrome c2 and Membrane-Anchored Cytochrome cy Are Both Efficient Electron Donors to the cbb3- andaa3-Type Cytochrome cOxidases during Respiratory Growth of Rhodobacter sphaeroides , 2001, Journal of bacteriology.

[52]  M. Choudhary,et al.  Respiratory pathways of Rhodobacter sphaeroides 2.4.1(T): identification and characterization of genes encoding quinol oxidases. , 2000, FEMS microbiology letters.

[53]  R A Stuart,et al.  The Cytochrome bc 1 and Cytochromec Oxidase Complexes Associate to Form a Single Supracomplex in Yeast Mitochondria* , 2000, The Journal of Biological Chemistry.

[54]  K. Pfeiffer,et al.  Supercomplexes in the respiratory chains of yeast and mammalian mitochondria , 2000, The EMBO journal.

[55]  V. Roberts,et al.  Definition of the Interaction Domain for Cytochrome con Cytochrome c Oxidase , 1999, The Journal of Biological Chemistry.

[56]  F. Daldal,et al.  The membrane-attached electron carrier cytochrome cy from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[57]  A. Crofts,et al.  Expression and one-step purification of a fully active polyhistidine-tagged cytochrome bc1 complex from Rhodobacter sphaeroides. , 1999, Protein Expression and Purification.

[58]  I. Bertini,et al.  Solution structure of reduced horse heart cytochrome c , 1999, JBIC Journal of Biological Inorganic Chemistry.

[59]  P. Brzezinski,et al.  Factors determining electron-transfer rates in cytochrome c oxidase: investigation of the oxygen reaction in the R. sphaeroides enzyme. , 1998, Biochimica et biophysica acta.

[60]  S. Ferguson-Miller,et al.  Overexpression and purification of cytochrome c oxidase from Rhodobacter sphaeroides. , 1998, Protein expression and purification.

[61]  S. Kaplan,et al.  Oxygen Regulation of the ccoN Gene Encoding a Component of the cbb3 Oxidase inRhodobacter sphaeroides 2.4.1T: Involvement of the FnrL Protein , 1998, Journal of bacteriology.

[62]  T. Donohue,et al.  Transcriptional control of several aerobically induced cytochrome structural genes in Rhodobacter sphaeroides. , 1997, Microbiology.

[63]  G L Liao,et al.  The reduced minus oxidized difference spectra of cytochromes a and a3. , 1996, Biochimica et biophysica acta.

[64]  P Beroza,et al.  Co-crystallization and characterization of the photosynthetic reaction center-cytochrome c2 complex from Rhodobacter sphaeroides. , 1996, Biochemistry.

[65]  R. Gennis,et al.  Rapid purification of wildtype and mutant cytochrome c oxidase from Rhodobacter sphaeroides by Ni2+‐NTA affinity chromatography , 1995, FEBS letters.

[66]  B. Barquera,et al.  The superfamily of heme-copper respiratory oxidases , 1994, Journal of bacteriology.

[67]  R. Gennis,et al.  A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA. , 1994, Biochemistry.

[68]  R. Maier,et al.  Purification and characterization of an O2-utilizing cytochrome-c oxidase complex from Bradyrhizobium japonicum bacteroid membranes. , 1993, Biochimica et biophysica acta.

[69]  S. Ferguson-Miller,et al.  Cytochrome aa3 of Rhodobacter sphaeroides as a model for mitochondrial cytochrome c oxidase. Purification, kinetics, proton pumping, and spectral analysis. , 1992, The Journal of biological chemistry.

[70]  R. Gennis,et al.  Spectroscopic and genetic evidence for two heme-Cu-containing oxidases in Rhodobacter sphaeroides , 1992, Journal of bacteriology.

[71]  M. Bott,et al.  The Bradyrhizobium japonicum cycM gene encodes a membrane-anchored homolog of mitochondrial cytochrome c , 1991, Journal of bacteriology.

[72]  A. Crofts,et al.  Cloning and DNA sequencing of the fbc operon encoding the cytochrome bc1 complex from Rhodobacter sphaeroides. Characterization of fbc deletion mutants and complementation by a site-specific mutational variant. , 1990, European journal of biochemistry.

[73]  T. Donohue,et al.  Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides. , 1988, Biochemistry.

[74]  T. King,et al.  Preparation and properties of cardiac cytochrome c1. , 1987, Biochemistry.

[75]  T. Donohue,et al.  Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene , 1986, Journal of bacteriology.

[76]  B. Trumpower,et al.  Isolation of ubiquinol oxidase from Paracoccus denitrificans and resolution into cytochrome bc1 and cytochrome c-aa3 complexes. , 1985, The Journal of biological chemistry.

[77]  C R Woese,et al.  The phylogeny of purple bacteria: the alpha subdivision. , 1984, Systematic and applied microbiology.

[78]  H. Bosshard,et al.  Spectroscopic analysis of the interaction between cytochrome c and cytochrome c oxidase. , 1984, The Journal of biological chemistry.

[79]  B. Trumpower,et al.  Purification of a reconstitutively active iron-sulfur protein (oxidation factor) from succinate . cytochrome c reductase complex of bovine heart mitochondria. , 1979, The Journal of biological chemistry.

[80]  P. Thomas,et al.  An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels. , 1976, Analytical biochemistry.

[81]  E. C. Slater,et al.  The reaction of antimycin with a cytochrome b preparation active in reconstitution of the respiratory chain. , 1970, Biochimica et biophysica acta.

[82]  W. Vanneste.  The stoichiometry and absorption spectra of components a and a-3 in cytochrome c oxidase. , 1966, Biochemistry.

[83]  G. Cohen-bazire,et al.  Kinetic studies of pigment synthesis by non-sulfur purple bacteria. , 1957, Journal of cellular and comparative physiology.

[84]  H. Schägger,et al.  Blue native PAGE , 2006, Nature Protocols.

[85]  M. Hill,et al.  Integrity of thermus thermophilus cytochrome c552 Synthesized by escherichia coli cells expressing the host‐specific cytochrome c maturation genes, ccmABCDEFGH: Biochemical, spectral, and structural characterization of the recombinant protein , 2000, Protein science : a publication of the Protein Society.

[86]  B. F. Gelder.  On cytochrome c oxidase I. The extinction coefficients of cytochrome a and cytochrome a3 , 1966 .