Predicting Alzheimer's Disease using Soft Computing Feature selection algorithms and Based on rs-fMRI and sMRI

Alzheimer’s disease (AD), a progressive, irreversible neurodegenerative disorder, occurs most frequently in older adults and gradually destroys regions of the brain that are responsible for memory, thinking, learning, and behavior. In this paper, AD prediction is investigated based on rs-fMRI and sMRI analysis. Three feature selection algorithms based on soft computing method has been proposed to classify MCI-C from MCI-NC through training SVM. This is the first study used to integrate rs-fMRI and sMRI for AD prediction. The results refer to the significant brain areas (functional and structural) impaired in AD. Furthermore, NBS method on brain functional parcellations has been utilized for separating MCI-C from MCI-NC and detecting the discriminative ability networks for AD prediction.

[1]  Clara A. Scholl,et al.  Synchronized delta oscillations correlate with the resting-state functional MRI signal , 2007, Proceedings of the National Academy of Sciences.

[2]  A. M. Dale,et al.  A hybrid approach to the skull stripping problem in MRI , 2004, NeuroImage.

[3]  M. V. D. Heuvel,et al.  Exploring the brain network: A review on resting-state fMRI functional connectivity , 2010, European Neuropsychopharmacology.

[4]  Jamie D. Feusner,et al.  Graph-theoretical analysis of resting-state fMRI in pediatric obsessive-compulsive disorder. , 2016, Journal of affective disorders.

[5]  S. DeKosky,et al.  Post-mortem correlates of in vivo PiB-PET amyloid imaging in a typical case of Alzheimer's disease , 2008, Brain : a journal of neurology.

[6]  Dinggang Shen,et al.  Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients , 2012, PloS one.

[7]  Anders M. Dale,et al.  Sequence-independent segmentation of magnetic resonance images , 2004, NeuroImage.

[8]  Zhijun Zhang,et al.  Abnormal whole-brain functional connection in amnestic mild cognitive impairment patients , 2011, Behavioural Brain Research.

[9]  Paul J. Laurienti,et al.  Consistency of Network Modules in Resting-State fMRI Connectome Data , 2012, PloS one.

[10]  C. Stam,et al.  Small‐world properties of nonlinear brain activity in schizophrenia , 2009, Human brain mapping.

[11]  G. V. Van Hoesen,et al.  The topographical and neuroanatomical distribution of neurofibrillary tangles and neuritic plaques in the cerebral cortex of patients with Alzheimer's disease. , 1991, Cerebral cortex.

[12]  Sasha Bozeat,et al.  Which neuropsychiatric and behavioural features distinguish frontal and temporal variants of frontotemporal dementia from Alzheimer's disease? , 2000, Journal of neurology, neurosurgery, and psychiatry.

[13]  B. Turetsky,et al.  Whole-brain morphometric study of schizophrenia revealing a spatially complex set of focal abnormalities. , 2005, Archives of general psychiatry.

[14]  Anders M. Dale,et al.  Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature , 2010, NeuroImage.

[15]  Daoqiang Zhang,et al.  Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers , 2012, PloS one.

[16]  Daoqiang Zhang,et al.  Domain Transfer Learning for MCI Conversion Prediction , 2012, MICCAI.

[17]  R W Bowtell,et al.  Functional magnetic resonance imaging: imaging techniques and contrast mechanisms. , 1999, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[18]  William W. Seeley,et al.  Anterior insula degeneration in frontotemporal dementia , 2010, Brain Structure and Function.

[19]  C. Davatzikos Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, Alzheimer's & Dementia.

[20]  Jonas Krause,et al.  A Survey of Swarm Algorithms Applied to Discrete Optimization Problems , 2013 .

[21]  Vladimir Fonov,et al.  Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning , 2013, NeuroImage.

[22]  A. Dale,et al.  Whole Brain Segmentation Automated Labeling of Neuroanatomical Structures in the Human Brain , 2002, Neuron.

[23]  S. Shamay-Tsoory,et al.  Neuroanatomical and neurochemical bases of theory of mind , 2011, Neuropsychologia.

[24]  Anders M. Dale,et al.  Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex , 2001, IEEE Transactions on Medical Imaging.

[25]  Bharat B. Biswal,et al.  Competition between functional brain networks mediates behavioral variability , 2008, NeuroImage.

[26]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[27]  Jonathan D. Power,et al.  Prediction of Individual Brain Maturity Using fMRI , 2010, Science.

[28]  Nick C Fox,et al.  The Alzheimer's disease neuroimaging initiative (ADNI): MRI methods , 2008, Journal of magnetic resonance imaging : JMRI.

[29]  Cameron S. Carter,et al.  Optimum template selection for atlas-based segmentation , 2007, NeuroImage.

[30]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[31]  Guangyu Chen,et al.  Decreased Effective Connectivity from Cortices to the Right Parahippocampal Gyrus in Alzheimer's Disease Subjects , 2014, Brain Connect..

[32]  et al.,et al.  Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline , 2008, NeuroImage.

[33]  Vinod Menon,et al.  Functional connectivity in the resting brain: A network analysis of the default mode hypothesis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[34]  J. Trojanowski,et al.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification , 2011, Neurobiology of Aging.

[35]  Heikki Huttunen,et al.  Machine learning framework for early MRI-based Alzheimer's conversion prediction in MCI subjects , 2015, NeuroImage.

[36]  Tijn M. Schouten,et al.  Combining multiple anatomical MRI measures improves Alzheimer's disease classification , 2016, Human brain mapping.

[37]  C. Rosazza,et al.  Resting-state brain networks: literature review and clinical applications , 2011, Neurological Sciences.

[38]  J O Rinne,et al.  Amyloid PET imaging in patients with mild cognitive impairment , 2011, Neurology.

[39]  D. Rueckert,et al.  Multi-Method Analysis of MRI Images in Early Diagnostics of Alzheimer's Disease , 2011, PloS one.

[40]  R. Turner,et al.  Characterizing Dynamic Brain Responses with fMRI: A Multivariate Approach , 1995, NeuroImage.

[41]  A. Babajani-Feremi,et al.  Application of advanced machine learning methods on resting-state fMRI network for identification of mild cognitive impairment and Alzheimer’s disease , 2015, Brain Imaging and Behavior.

[42]  Kuncheng Li,et al.  Changes in thalamus connectivity in mild cognitive impairment: evidence from resting state fMRI. , 2012, European journal of radiology.