Two-dimensional difference gel electrophoresis (DiGE) analysis of plasmas from dengue fever patients.

Dengue fever is the world's most important arthropod-born viral disease affecting humans. To contribute to a better understanding of its pathogenesis, this study aims to identify proteins differentially expressed in plasmas from severe dengue fever patients relative to healthy donors. The use of 2-D Fluorescence Difference Gel Electrophoresis to analyze plasmas depleted of six high-abundance proteins (albumin, IgG, antitrypsin, IgA, transferrin and haptoglobin) allowed for the detection of 73 differentially expressed protein spots (n = 13, p < 0.01), of which 37 could be identified by mass spectrometry. These 37 spots comprised a total of 14 proteins, as follows: 7 had increased expression in plasmas from dengue fever patients (C1 inhibitor, alpha1-antichymotrypsin, vitamin D-binding protein, fibrinogen gamma-chain, alpha1-acid glycoprotein, apolipoprotein J and complement component C3c), while 7 others had decreased expression in the same samples (alpha-2 macroglobulin, prothrombin, histidine-rich glycoprotein, apolipoproteins A-IV and A-I, transthyretin and complement component C3b). The possible involvement of these proteins in the inflammatory process triggered by dengue virus infection and in the repair mechanisms of vascular damage occurring in this pathology is discussed in this study.

[1]  The use of two-dimension electrophoresis to identify serum biomarkers from patients with dengue haemorrhagic fever. , 2009, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[2]  R. Zingali,et al.  Secretome of HepG2 cells infected with dengue virus: implications for pathogenesis. , 2008, Biochimica et biophysica acta.

[3]  P. Carvalho,et al.  Caititu: a tool to graphically represent peptide sequence coverage and domain distribution. , 2008, Journal of proteomics.

[4]  Fernando A Bozza,et al.  Multiplex cytokine profile from dengue patients: MIP-1beta and IFN-gamma as predictive factors for severity , 2008, BMC infectious diseases.

[5]  Jeerayut Chaijaruwanich,et al.  Differences in global gene expression in peripheral blood mononuclear cells indicate a significant role of the innate responses in progression of dengue fever but not dengue hemorrhagic fever. , 2008, The Journal of infectious diseases.

[6]  C. Vulpe,et al.  Déjà vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins , 2008, Proteomics.

[7]  A. Forsgren,et al.  Purification of alpha1-antichymotrypsin from human plasma with recombinant M. catarrhalis ubiquitous surface protein A1. , 2008, JIM - Journal of Immunological Methods.

[8]  Pieter H. Reitsma,et al.  Differential Gene Expression Changes in Children with Severe Dengue Virus Infections , 2008, PLoS neglected tropical diseases.

[9]  Y. Shoenfeld,et al.  Histidine-Rich Glycoprotein Modulation of Immune/Autoimmune, Vascular, and Coagulation Systems , 2008, Clinical reviews in allergy & immunology.

[10]  Mark R. Wilson,et al.  Protease activation of alpha2-macroglobulin modulates a chaperone-like action with broad specificity. , 2008, Biochemistry.

[11]  D. Vujaklija Detection of Proteins , 2009 .

[12]  J. Rosa,et al.  Acute-phase protein α-1-acid glycoprotein mediates neutrophil migration failure in sepsis by a nitric oxide-dependent mechanism , 2007, Proceedings of the National Academy of Sciences.

[13]  Shui-Tein Chen,et al.  Proteomic analysis of host responses in HepG2 cells during dengue virus infection. , 2007, Journal of proteome research.

[14]  A. Dominiczak,et al.  Body fluid proteomics for biomarker discovery: lessons from the past hold the key to success in the future. , 2007, Journal of proteome research.

[15]  Lingyun Huang,et al.  Reduced transthyretin expression in sera of lung cancer , 2007, Cancer science.

[16]  M. Guzmán,et al.  Apoptosis in tissues from fatal dengue shock syndrome. , 2007, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[17]  I. Kurane Dengue hemorrhagic fever with special emphasis on immunopathogenesis. , 2007, Comparative immunology, microbiology and infectious diseases.

[18]  Zhongyan Wang,et al.  Effects of hepatocyte nuclear factor-4alpha on the regulation of the hepatic acute phase response. , 2007, Journal of molecular biology.

[19]  Xiao-yin Chen,et al.  Dengue virus regulates the expression of hemostasis-related molecules in human vein endothelial cells. , 2007, The Journal of infection.

[20]  Denis Hochstrasser,et al.  How shall we use the proteomics toolbox for biomarker discovery? , 2007, Journal of proteome research.

[21]  P. Cutler,et al.  Serum proteomic analysis focused on fibrosis in patients with hepatitis C virus infection , 2007, Journal of Translational Medicine.

[22]  N. Tokutomi,et al.  Alpha1-acid glycoprotein suppresses rat acute inflammatory paw edema through the inhibition of neutrophils activation and prostaglandin E2 generation. , 2007, Biological & pharmaceutical bulletin.

[23]  Dongxu Liu,et al.  C1 inhibitor: biologic activities that are independent of protease inhibition. , 2007, Immunobiology.

[24]  Arun Bansal,et al.  Dengue and dengue hemorrhagic fever: management issues in an intensive care unit. , 2007, Jornal de pediatria.

[25]  A. Osterhaus,et al.  Dengue disease severity in Indonesian children: an evaluation of the World Health Organization classification system. , 2007, BMC infectious diseases.

[26]  John D Lambris,et al.  Effect of supraphysiologic levels of C1-inhibitor on the classical, lectin and alternative pathways of complement. , 2007, Molecular immunology.

[27]  G. Merlini,et al.  Clinical indications for plasma protein assays: transthyretin (prealbumin) in inflammation and malnutrition: International Federation of Clinical Chemistry and Laboratory Medicine (IFCC): IFCC Scientific Division Committee on Plasma Proteins (C-PP) , 2007, Clinical chemistry and laboratory medicine.

[28]  S. Honsawek,et al.  Increased levels of serum hyaluronan in patients with dengue infection. , 2007, The Journal of infection.

[29]  A. Schmidtchen,et al.  Histidine‐rich glycoprotein exerts antibacterial activity , 2007, The FEBS journal.

[30]  M. Guzmán,et al.  Of cascades and perfect storms: the immunopathogenesis of dengue haemorrhagic fever‐dengue shock syndrome (DHF/DSS) , 2007, Immunology and cell biology.

[31]  K. Hjernø,et al.  Protein identification by peptide mass fingerprinting. , 2007, Methods in molecular biology.

[32]  Seon-Ah Chong,et al.  Different isoforms of apolipoprotein AI present heterologous post-translational expression in HIV infected patients. , 2007, Journal of proteome research.

[33]  S. Hemby,et al.  Two-dimensional fluorescence difference gel electrophoresis for comparative proteomics profiling , 2006, Nature Protocols.

[34]  M. Speeckaert,et al.  Biological and clinical aspects of the vitamin D binding protein (Gc-globulin) and its polymorphism. , 2006, Clinica chimica acta; international journal of clinical chemistry.

[35]  I. Fodor,et al.  Statistical analysis of the experimental variation in the proteomic characterization of human plasma by two-dimensional difference gel electrophoresis. , 2006, Journal of proteome research.

[36]  Werner Zolg,et al.  The Proteomic Search for Diagnostic Biomarkers , 2006, Molecular & Cellular Proteomics.

[37]  A. Kroeger,et al.  Classifying dengue: a review of the difficulties in using the WHO case classification for dengue haemorrhagic fever , 2006, Tropical medicine & international health : TM & IH.

[38]  Jacqueline L Deen,et al.  The WHO dengue classification and case definitions: time for a reassessment , 2006, The Lancet.

[39]  G. Malavige,et al.  Pathogenesis of liver involvement during dengue viral infections. , 2006, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[40]  Alun Preece,et al.  Universal Metrics for Quality Assessment of Protein Identifications by Mass Spectrometry* , 2006, Molecular & Cellular Proteomics.

[41]  A. Heck,et al.  ProteomIQ blue, a potent post-stain for the visualization and subsequent mass spectrometry based identification of fluorescent stained proteins on 2D-gels. , 2006, Journal of proteome research.

[42]  Yun-ping Zhu,et al.  Inflammation inhibitors were remarkably up‐regulated in plasma of severe acute respiratory syndrome patients at progressive phase , 2006, Proteomics.

[43]  E. Azeredo,et al.  NK cells, displaying early activation, cytotoxicity and adhesion molecules, are associated with mild dengue disease , 2006, Clinical and experimental immunology.

[44]  S. L. Seneviratnea,et al.  Pathogenesis of liver involvement during dengue viral infections , 2006 .

[45]  Piet Gros,et al.  Structures of complement component C3 provide insights into the function and evolution of immunity , 2005, Nature.

[46]  P. Desprès,et al.  Innate immune responses to dengue virus. , 2005, Archives of medical research.

[47]  W. Barrett,et al.  Differences among techniques for high‐abundant protein depletion , 2005, Proteomics.

[48]  M. Mosesson Fibrinogen and fibrin structure and functions , 2005, Journal of thrombosis and haemostasis : JTH.

[49]  Eugene A. Kapp,et al.  Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database , 2005, Proteomics.

[50]  A. Piñeiro,et al.  Immune-regulation of the apolipoprotein A-I/C-III/A-IV gene cluster in experimental inflammation. , 2005, Cytokine.

[51]  R. Marouga,et al.  The development of the DIGE system: 2D fluorescence difference gel analysis technology , 2005, Analytical and bioanalytical chemistry.

[52]  S. Wakabayashi,et al.  Enhanced blood coagulation and fibrinolysis in mice lacking histidine‐rich glycoprotein (HRG) , 2005, Journal of thrombosis and haemostasis : JTH.

[53]  Katalin F Medzihradszky,et al.  Peptide sequence analysis. , 2005, Methods in enzymology.

[54]  M. Rossmann,et al.  A structural perspective of the flavivirus life cycle , 2005, Nature Reviews Microbiology.

[55]  Julie Perkins,et al.  Proteomic analysis of human serum by two-dimensional differential gel electrophoresis after depletion of high-abundant proteins. , 2004, Journal of proteome research.

[56]  J. Bertolini,et al.  Therapeutic potential of vitamin D-binding protein. , 2004, Trends in biotechnology.

[57]  D. Farrell Pathophysiologic roles of the fibrinogen gamma chain , 2004, Current opinion in hematology.

[58]  D. Scott‐Algara,et al.  Human Apolipoprotein A-IV Reduces Secretion of Proinflammatory Cytokines and Atherosclerotic Effects of a Chronic Infection Mimicked by Lipopolysaccharide , 2004, Arteriosclerosis, thrombosis, and vascular biology.

[59]  L. Borish,et al.  Transthyretin is an inhibitor of monocyte and endothelial cell interleukin-1 production , 1992, Inflammation.

[60]  Stephen O. David,et al.  A novel experimental design for comparative two‐dimensional gel analysis: Two‐dimensional difference gel electrophoresis incorporating a pooled internal standard , 2003, Proteomics.

[61]  N. Anderson,et al.  The Human Plasma Proteome , 2002, Molecular & Cellular Proteomics.

[62]  N. M. Dung,et al.  Coagulation abnormalities in dengue hemorrhagic Fever: serial investigations in 167 Vietnamese children with Dengue shock syndrome. , 2002, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[63]  N. White,et al.  Susceptibility to dengue hemorrhagic fever in vietnam: evidence of an association with variation in the vitamin d receptor and Fc gamma receptor IIa genes. , 2002, The American journal of tropical medicine and hygiene.

[64]  D. Nayak,et al.  High-Density Lipoprotein Loses Its Anti-Inflammatory Properties During Acute Influenza A Infection , 2001, Circulation.

[65]  J. Engler,et al.  Structural models of human apolipoprotein A-I: a critical analysis and review. , 2001, Biochimica et biophysica acta.

[66]  P. Tempst,et al.  Enzymatic Digestion of Proteins in Solution , 1995, Current protocols in protein science.

[67]  T. Fournier,et al.  Alpha-1-acid glycoprotein. , 2000, Biochimica et biophysica acta.

[68]  E. Harris,et al.  Clinical, epidemiologic, and virologic features of dengue in the 1998 epidemic in Nicaragua. , 2000, The American journal of tropical medicine and hygiene.

[69]  D. Speicher,et al.  Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies. , 2000, Journal of biomolecular techniques : JBT.

[70]  N. Volkmann,et al.  The crystal structure of modified bovine fibrinogen. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[71]  T. Rabilloud,et al.  Detection of Proteins on Two-Dimensional Electrophoresis Gels , 2000 .

[72]  B. Zlokovic,et al.  Functional and structural properties of lipid-associated apolipoprotein J (clusterin). , 1999, The Biochemical journal.

[73]  M. Ünlü Difference Gel Electrophoresis , 1999 .

[74]  I. Kushner,et al.  Acute-phase proteins and other systemic responses to inflammation. , 1999, The New England journal of medicine.

[75]  H. Schatzmayr,et al.  Diagnosis of dengue by using reverse transcriptase-polymerase chain reaction. , 1997, Memorias do Instituto Oswaldo Cruz.

[76]  J. Altin,et al.  Histidine-rich glycoprotein binds to human IgG and C1q and inhibits the formation of insoluble immune complexes. , 1997, Biochemistry.

[77]  M. Ünlü,et al.  Difference gel electrophoresis. A single gel method for detecting changes in protein extracts , 1997, Electrophoresis.

[78]  A. Shevchenko,et al.  Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. , 1996, Analytical chemistry.

[79]  F B Taylor,et al.  Alpha-2-macroglobulin functions as an inhibitor of fibrinolytic, clotting, and neutrophilic proteinases in sepsis: studies using a baboon model , 1993, Infection and immunity.

[80]  H. Schatzmayr,et al.  Dengue epidemic in the state of Rio de Janeiro, Brazil: virological and epidemiological aspects. , 1993, Revista do Instituto de Medicina Tropical de Sao Paulo.

[81]  K. Williams,et al.  2 – Enzymatic Digestion of Proteins and HPLC Peptide Isolation , 1993 .

[82]  P. K. Smith,et al.  Measurement of protein using bicinchoninic acid. , 1985, Analytical biochemistry.