Cell-Free Enzymatic Conversion of Spent Coffee Grounds Into the Platform Chemical Lactic Acid

The coffee industry produces over 10 billion kg beans per year and generates high amounts of different waste products. Spent coffee grounds (SCG) are an industrially underutilized waste resource, which is rich in the polysaccharide galactomannan, a polysaccharide consisting of a mannose backbone with galactose side groups. Here, we present a cell-free reaction cascade for the conversion of mannose, the most abundant sugar in SCG, into L-lactic acid. The enzymatic conversion is based on a so far unknown oxidative mannose metabolism from Thermoplasma acidophilum and uses a previously characterized mannonate dehydratase to convert mannose into lactic acid via 4 enzymatic reactions. In comparison to known in vivo metabolisms the bioconversion is free of phosphorylated intermediates and cofactors. Assessment of enzymes, adjustment of enzyme loadings, substrate and cofactor concentrations, and buffer ionic strength allowed the identification of crucial reaction parameters and bottlenecks. Moreover, reactions with isotope labeled mannose enabled the monitoring of pathway intermediates and revealed a reverse flux in the conversion process. Finally, 4.4 ± 0.1 mM lactic acid was produced from 14.57 ± 0.7 mM SCG-derived mannose. While the conversion efficiency of the process can be further improved by enzyme engineering, the reaction demonstrates the first multi-enzyme cascade for the bioconversion of SCG.

[1]  L. Bell Maillard reaction as influenced by buffer type and concentration , 1997 .

[2]  Michael C Jewett,et al.  Cell-Free Mixing of Escherichia coli Crude Extracts to Prototype and Rationally Engineer High-Titer Mevalonate Synthesis. , 2016, ACS synthetic biology.

[3]  S. Mussatto,et al.  Sugars metabolism and ethanol production by different yeast strains from coffee industry wastes hydrolysates , 2012 .

[4]  C. Halliwell,et al.  Introduction of a (poly)histidine tag in L-lactate dehydrogenase produces a mixture of active and inactive molecules. , 2001, Analytical biochemistry.

[5]  Y. Zhang,et al.  Upgrade of wood sugar d-xylose to a value-added nutraceutical by in vitro metabolic engineering. , 2019, Metabolic engineering.

[6]  M. Coimbra,et al.  Immunostimulatory properties of coffee mannans. , 2009, Molecular nutrition & food research.

[7]  R. Auras,et al.  Poly(lactic acid)-Mass production, processing, industrial applications, and end of life. , 2016, Advanced drug delivery reviews.

[8]  M. Okure,et al.  Biomass waste-to-energy valorisation technologies: a review case for banana processing in Uganda , 2017, Biotechnology for Biofuels.

[9]  L. Maillard,et al.  Action des acides amines sur les sucres : formation des melanoidines par voie methodique , 1912 .

[10]  M. Danson,et al.  Metabolism of glucose via a modified Entner‐Doudoroff pathway in the thermoacidophilic archaebacterium Thermoplasma acidophilum , 1986 .

[11]  T. Roberts,et al.  Synthetic Biology for Cell-Free Biosynthesis: Fundamentals of Designing Novel In Vitro Multi-Enzyme Reaction Networks. , 2018, Advances in biochemical engineering/biotechnology.

[12]  B. Siebers,et al.  Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation , 2014, Microbiology and Molecular Reviews.

[13]  Andrew Care,et al.  Tools and strategies for constructing cell-free enzyme pathways. , 2019, Biotechnology advances.

[14]  R. Milo,et al.  Glycolytic strategy as a tradeoff between energy yield and protein cost , 2013, Proceedings of the National Academy of Sciences.

[15]  N. Tamura,et al.  Analysis of Bacterial Glucose Dehydrogenase Homologs from Thermoacidophilic Archaeon Thermoplasma acidophilum: Finding and Characterization of Aldohexose Dehydrogenase , 2004, Bioscience, biotechnology, and biochemistry.

[16]  D. Kucera,et al.  Biotechnological conversion of spent coffee grounds into polyhydroxyalkanoates and carotenoids. , 2015, New biotechnology.

[17]  R. Evangelista,et al.  Complete Utilization of Spent Coffee Grounds To Produce Biodiesel, Bio-Oil, and Biochar , 2013 .

[18]  E. Makshina,et al.  Lactic acid as a platform chemical in the biobased economy: the role of chemocatalysis , 2013 .

[19]  Anja Schmidt,et al.  Characterization of recombinantly expressed dihydroxy-acid dehydratase from Sulfobus solfataricus-A key enzyme for the conversion of carbohydrates into chemicals. , 2015, Journal of biotechnology.

[20]  M. Goto,et al.  Bioactivities of low-grade green coffee and spent coffee in different in vitro model systems , 2009 .

[21]  Cuiqing Ma,et al.  Enzymatic Cascades for Efficient Biotransformation of Racemic Lactate Derived from Corn Steep Water , 2017 .

[22]  Andrew Care,et al.  Solid-binding peptides for immobilisation of thermostable enzymes to hydrolyse biomass polysaccharides , 2017, Biotechnology for Biofuels.

[23]  Nídia S. Caetano,et al.  Valorization of Coffee Grounds for Biodiesel Production , 2012 .

[24]  R. Weimberg Pentose oxidation by Pseudomonas fragi. , 1961, The Journal of biological chemistry.

[25]  Ashty S. Karim,et al.  Cell‐free metabolic engineering: Biomanufacturing beyond the cell , 2015, Biotechnology journal.

[27]  H. Ohtake,et al.  In vitro metabolic engineering for the salvage synthesis of NAD(.). , 2016, Metabolic engineering.

[28]  D. Hough,et al.  An extremely thermostable aldolase from Sulfolobus solfataricus with specificity for non-phosphorylated substrates. , 1999, The Biochemical journal.

[29]  Solange I. Mussatto,et al.  Growth of fungal strains on coffee industry residues with removal of polyphenolic compounds , 2012 .

[30]  Amie D. Sluiter,et al.  Determination of Structural Carbohydrates and Lignin in Biomass , 2004 .

[31]  Li-kun Han,et al.  Effects of mannooligosaccharides from coffee mannan on fat storage in mice fed a high fat diet , 2006 .

[32]  P. Kuzmič,et al.  Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. , 1996, Analytical biochemistry.

[33]  Takeshi Omasa,et al.  Synthetic metabolic engineering-a novel, simple technology for designing a chimeric metabolic pathway , 2012, Microbial Cell Factories.

[34]  V. Sieber,et al.  Improvement of thermostable aldehyde dehydrogenase by directed evolution for application in Synthetic Cascade Biomanufacturing. , 2013, Enzyme and microbial technology.

[35]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[36]  C. You,et al.  Conversion of d-glucose to l-lactate via pyruvate by an optimized cell-free enzymatic biosystem containing minimized reactions , 2018, Synthetic and systems biotechnology.

[37]  M. Neureiter,et al.  Biotechnological conversion of spent coffee grounds into lactic acid , 2018, Letters in applied microbiology.

[38]  R. Willows,et al.  Characterisation of the First Archaeal Mannonate Dehydratase from Thermoplasma acidophilum and Its Potential Role in the Catabolism of D-Mannose , 2019, Catalysts.

[39]  Solange I. Mussatto,et al.  A study on chemical constituents and sugars extraction from spent coffee grounds , 2011 .

[40]  N. Kaplan,et al.  Malate dehydrogenases. II. Purification and properties of Bacillus subtilis, Bacillus stearothermophilus, and Escherichia coli malate dehydrogenases. , 1967, The Journal of biological chemistry.

[41]  Christoph Hold,et al.  Forward design of a complex enzyme cascade reaction , 2016, Nature Communications.

[42]  B. Dave Oomah,et al.  Spent coffee grounds: A review on current research and future prospects , 2015 .

[43]  Kenji Okano,et al.  In vitro production of n-butanol from glucose. , 2013, Metabolic engineering.

[44]  S. Mohos,et al.  Stable thiobarbituric acid chromophore with dimethyl sulphoxide. Application to sialic acid assay in analytical de-O-acetylation. , 1976, The Biochemical journal.

[45]  G. Taylor,et al.  Gluconate dehydratase from the promiscuous Entner–Doudoroff pathway in Sulfolobus solfataricus , 2004, FEBS letters.

[46]  M. Bott,et al.  The Nonphosphorylative Entner-Doudoroff Pathway in the Thermoacidophilic Euryarchaeon Picrophilus torridus Involves a Novel 2-Keto-3-Deoxygluconate- Specific Aldolase , 2009, Journal of bacteriology.

[47]  J. Mielenz,et al.  Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails. , 2009, ChemSusChem.

[48]  Cuiqing Ma,et al.  An artificial enzymatic reaction cascade for a cell-free bio-system based on glycerol , 2015 .

[49]  Antonio Zuorro,et al.  Spent coffee grounds as a valuable source of phenolic compounds and bioenergy , 2012 .

[50]  H. Ohtake,et al.  In vitro bioconversion of chitin to pyruvate with thermophilic enzymes. , 2017, Journal of bioscience and bioengineering.

[51]  Volker Sieber,et al.  Cell-free metabolic engineering: production of chemicals by minimized reaction cascades. , 2012, ChemSusChem.

[52]  V. Sieber,et al.  In vitro metabolic engineering for the production of α-ketoglutarate. , 2017, Metabolic engineering.

[53]  H. Wilks,et al.  An investigation of the contribution made by the carboxylate group of an active site histidine-aspartate couple to binding and catalysis in lactate dehydrogenase. , 1988, Biochemistry.