Efficient Synthesis of Limonene in Saccharomyces cerevisiae Using Combinatorial Metabolic Engineering Strategies.

Limonene is a volatile monoterpene compound that is widely used in food additives, pharmaceutical products, fragrances, and toiletries. We herein attempted to perform efficient biosynthesis of limonene in Saccharomyces cerevisiae using systematic metabolic engineering strategies. First, we conducted de novo synthesis of limonene in S. cerevisiae and achieved a titer of 46.96 mg/L. Next, by dynamic inhibition of the competitive bypass of key metabolic branches regulated by ERG20 and optimization of the copy number of tLimS, a greater proportion of the metabolic flow was directed toward limonene synthesis, achieving a titer of 640.87 mg/L. Subsequently, we enhanced the acetyl-CoA and NADPH supply, which increased the limonene titer to 1097.43 mg/L. Then, we reconstructed the limonene synthesis pathway in the mitochondria. Dual regulation of cytoplasmic and mitochondrial metabolism further increased the limonene titer to 1586 mg/L. After optimization of the process of fed-batch fermentation, the limonene titer reached 2.63 g/L, the highest ever reported in S. cerevisiae.

[1]  Xueqin Lv,et al.  Engineered Saccharomyces cerevisiae for the De Novo Biosynthesis of (−)-Menthol , 2022, Journal of fungi.

[2]  J. Revuelta,et al.  Metabolic engineering of Ashbya gossypii for limonene production from xylose , 2022, Biotechnology for Biofuels and Bioproducts.

[3]  Xueqin Lv,et al.  De novo biosynthesis of rubusoside and rebaudiosides in engineered yeasts , 2022, Nature Communications.

[4]  Yongjin J. Zhou,et al.  Engineering cofactor supply and recycling to drive phenolic acid biosynthesis in yeast , 2022, Nature Chemical Biology.

[5]  Xueqin Lv,et al.  Engineered yeast for efficient de novo synthesis of 7‐dehydrocholesterol , 2022, Biotechnology and bioengineering.

[6]  J. Qiao,et al.  Combinatorial engineering of Saccharomyces cerevisiae for improving limonene production , 2021 .

[7]  Z. Rao,et al.  Enhancing the biotransformation efficiency of human CYP17A1 in Pichia pastoris by co-expressing CPR and glucose-6-phosphate dehydrogenase simultaneously , 2021, Systems Microbiology and Biomanufacturing.

[8]  Bei Gao,et al.  Metabolic compartmentalization in yeast mitochondria: Burden and solution for squalene overproduction. , 2021, Metabolic engineering.

[9]  Xinyao Lu,et al.  Improved pinene production in a recombinant yeast by fusion linker optimization and chaperon coexpression , 2021, Systems Microbiology and Biomanufacturing.

[10]  S. Kampranis,et al.  Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids , 2020, Proceedings of the National Academy of Sciences.

[11]  Guojie Jin,et al.  Microbial production of limonene and its derivatives: Achievements and perspectives. , 2020, Biotechnology advances.

[12]  Constantinos Theodoropoulos,et al.  Techno-economic assessment of microbial limonene production , 2019, Bioresource technology.

[13]  W. Zhou,et al.  The yeast peroxisome: A dynamic storage depot and subcellular factory for squalene overproduction. , 2019, Metabolic engineering.

[14]  Yi Tang,et al.  Engineered mitochondrial production of monoterpenes in Saccharomyces cerevisiae. , 2019, Metabolic engineering.

[15]  Claudia E Vickers,et al.  Orthogonal monoterpenoid biosynthesis in yeast constructed on an isomeric substrate , 2019, Nature Communications.

[16]  J. Qiao,et al.  Systematic Optimization of Limonene Production in Engineered Escherichia coli. , 2019, Journal of agricultural and food chemistry.

[17]  H. Pichler,et al.  Identifying and engineering the ideal microbial terpenoid production host , 2019, Applied Microbiology and Biotechnology.

[18]  J. Qiao,et al.  Orthogonal Engineering of Biosynthetic Pathway for Efficient Production of Limonene in Saccharomyces cerevisiae. , 2019, ACS synthetic biology.

[19]  C. Li,et al.  Enhanced β-Amyrin Synthesis in Saccharomyces cerevisiae by Coupling An Optimal Acetyl-CoA Supply Pathway. , 2019, Journal of agricultural and food chemistry.

[20]  Antonios M. Makris,et al.  Synthesis of 11-carbon terpenoids in yeast using protein and metabolic engineering , 2018, Nature Chemical Biology.

[21]  J. Nielsen,et al.  Yeast mitochondria: an overview of mitochondrial biology and the potential of mitochondrial systems biology. , 2018, FEMS yeast research.

[22]  J. Keasling,et al.  Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli. , 2018, Metabolic engineering.

[23]  Ying Wang,et al.  Chassis and key enzymes engineering for monoterpenes production. , 2017, Biotechnology advances.

[24]  Ying Wang,et al.  Manipulation of GES and ERG20 for geraniol overproduction in Saccharomyces cerevisiae. , 2017, Metabolic engineering.

[25]  N. Callewaert,et al.  An endoplasmic reticulum-engineered yeast platform for overproduction of triterpenoids. , 2017, Metabolic engineering.

[26]  Wenshan Liu,et al.  Improving acetyl-CoA biosynthesis in Saccharomyces cerevisiae via the overexpression of pantothenate kinase and PDH bypass , 2017, Biotechnology for Biofuels.

[27]  Jay D. Keasling,et al.  A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae , 2016, Nucleic acids research.

[28]  Haoming Xu,et al.  Dual regulation of cytoplasmic and mitochondrial acetyl-CoA utilization for improved isoprene production in Saccharomyces cerevisiae , 2016, Nature Communications.

[29]  J. Cardenas,et al.  Engineering cofactor and transport mechanisms in Saccharomyces cerevisiae for enhanced acetyl-CoA and polyketide biosynthesis. , 2016, Metabolic engineering.

[30]  H. Bouwmeester,et al.  Biotechnological production of limonene in microorganisms , 2016, Applied Microbiology and Biotechnology.

[31]  Sebastian A. Wagner,et al.  Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae , 2014, Molecular systems biology.

[32]  Xiaomei Lv,et al.  Sequential control of biosynthetic pathways for balanced utilization of metabolic intermediates in Saccharomyces cerevisiae. , 2015, Metabolic engineering.

[33]  M. Maffei,et al.  Engineering monoterpene production in yeast using a synthetic dominant negative geranyl diphosphate synthase. , 2014, ACS synthetic biology.

[34]  George M. Church,et al.  Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems , 2013, Nucleic acids research.

[35]  L. Nielsen,et al.  Alleviating monoterpene toxicity using a two‐phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae , 2012, Biotechnology and bioengineering.

[36]  Jens Nielsen,et al.  Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene α-santalene in a fed-batch mode. , 2012, Metabolic engineering.

[37]  Alexander Vainstein,et al.  Harnessing yeast subcellular compartments for the production of plant terpenoids. , 2011, Metabolic engineering.

[38]  H. Miziorko Enzymes of the mevalonate pathway of isoprenoid biosynthesis. , 2011, Archives of biochemistry and biophysics.

[39]  Hong-zhi Liu,et al.  Statistical optimization of culture media and conditions for production of mannan by Saccharomyces cerevisiae , 2009 .

[40]  W. Schwab,et al.  Monoterpene biosynthesis in lemon (Citrus limon). cDNA isolation and functional analysis of four monoterpene synthases. , 2002, European journal of biochemistry.

[41]  J. Hegemann,et al.  A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. , 2002, Nucleic acids research.

[42]  R. Hampton,et al.  Effects of overproduction of the catalytic domain of 3-hydroxy-3-methylglutaryl coenzyme A reductase on squalene synthesis in Saccharomyces cerevisiae , 1997, Applied and environmental microbiology.

[43]  F. Zimmermann,et al.  The role of the NAD-dependent glutamate dehydrogenase in restoring growth on glucose of a Saccharomyces cerevisiae phosphoglucose isomerase mutant. , 1993, European journal of biochemistry.

[44]  Jens Nielsen,et al.  Establishing a platform cell factory through engineering of yeast acetyl-CoA metabolism. , 2013, Metabolic engineering.

[45]  M. Hara,et al.  Molecular cloning and functional characterization of four monoterpene synthase genes from Citrus unshiu Marc. , 2004 .