Application of Biophysics to the Early Developability Assessment of Therapeutic Candidates and Its Application to Enhance Developability Properties

The emerging technologies in protein engineering and the greater demand for next-generation protein therapeutics with enhanced efficacy, safety, reduced immunogenicity, and improved delivery are translating into increased nomination of more extensively engineered, difficult to develop candidates for development. Recent advances in protein structure, stability, and function relationship combined with advances in biophysics are enabling more comprehensive and accurate developability and manufacturability screening during early research stages. This chapter focuses on current and future challenges in developing therapeutic biological drugs and the application of novel biophysical tools to screen and improve potential developability properties. Based on stage-related requirements like predictability, speed, limited material, and resource availability, the suitability and application of various biophysical tools are discussed. Two case studies are provided to demonstrate the value of such an early risk assessment.

[1]  Wayne R. Gombotz,et al.  Interleukin-1 Receptor (IL-1R) Liquid Formulation Development Using Differential Scanning Calorimetry , 1998, Pharmaceutical Research.

[2]  M. Neuberger,et al.  Affinity dependence of the B cell response to antigen: a threshold, a ceiling, and the importance of off-rate. , 1998, Immunity.

[3]  William F Weiss,et al.  High-throughput analysis of concentration-dependent antibody self-association. , 2011, Biophysical journal.

[4]  Bernhardt L Trout,et al.  Developability index: a rapid in silico tool for the screening of antibody aggregation propensity. , 2012, Journal of pharmaceutical sciences.

[5]  Bernhardt L Trout,et al.  Aggregation-prone motifs in human immunoglobulin G. , 2009, Journal of molecular biology.

[6]  Michaela Gebauer,et al.  Engineered protein scaffolds as next-generation antibody therapeutics. , 2009, Current opinion in chemical biology.

[7]  D. Kalonia,et al.  Long- and Short-Range Electrostatic Interactions Affect the Rheology of Highly Concentrated Antibody Solutions , 2009, Pharmaceutical Research.

[8]  A. Lenhoff,et al.  Self-interaction nanoparticle spectroscopy: a nanoparticle-based protein interaction assay. , 2008, Journal of the American Chemical Society.

[9]  K. Lundstrom Structural genomics of GPCRs. , 2005, Trends in biotechnology.

[10]  Kunihiro Hattori,et al.  Engineering the variable region of therapeutic IgG antibodies , 2011, mAbs.

[11]  E. T. White,et al.  Correlation of second virial coefficient with solubility for proteins in salt solutions , 2012, Biotechnology progress.

[12]  G. Winter,et al.  Aggregation-resistant domain antibodies selected on phage by heat denaturation , 2004, Nature Biotechnology.

[13]  Theodore W Randolph,et al.  Roles of conformational stability and colloidal stability in the aggregation of recombinant human granulocyte colony‐stimulating factor , 2003, Protein science : a publication of the Protein Society.

[14]  T. Tadros Interparticle interactions in concentrated suspensions and their bulk (rheological) properties. , 2011, Advances in colloid and interface science.

[15]  S. Urlinger,et al.  HuCAL PLATINUM, a synthetic Fab library optimized for sequence diversity and superior performance in mammalian expression systems. , 2011, Journal of molecular biology.

[16]  Bernhardt L Trout,et al.  Glycosylation influences on the aggregation propensity of therapeutic monoclonal antibodies. , 2011, Biotechnology journal.

[17]  Michael J. Hageman,et al.  Solubility, Solubilization and Dissolution in Drug Delivery During Lead Optimization , 2006 .

[18]  D. Beech,et al.  Extracellular Ion Channel Inhibitor Antibodies , 2009 .

[19]  Herren Wu,et al.  Structural characterization of a mutated, ADCC-enhanced human Fc fragment. , 2008, Molecular immunology.

[20]  D. Kalonia,et al.  Nature and consequences of protein-protein interactions in high protein concentration solutions. , 2008, International journal of pharmaceutics.

[21]  Shahid Uddin,et al.  Determining Antibody Stability: Creation of Solid‐Liquid Interfacial Effects within a High Shear Environment , 2007, Biotechnology progress.

[22]  L. DeLucas,et al.  High-Throughput Self-Interaction Chromatography: Applications in Protein Formulation Prediction , 2009, Pharmaceutical Research.

[23]  Robert W. Payne,et al.  Second virial coefficient determination of a therapeutic peptide by self‐interaction chromatography , 2006, Biopolymers.

[24]  G. Winter,et al.  Thermodynamically stable aggregation-resistant antibody domains through directed evolution. , 2008, Journal of molecular biology.

[25]  K D Wittrup,et al.  Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Andrew C. Chan,et al.  Therapeutic antibodies for autoimmunity and inflammation , 2010, Nature Reviews Immunology.

[27]  C. R. Thomas,et al.  Effects of shear on proteins in solution , 2011, Biotechnology Letters.

[28]  P. Ma,et al.  Value of novelty? , 2002, Nature Reviews Drug Discovery.

[29]  Bernhardt L. Trout,et al.  Design of therapeutic proteins with enhanced stability , 2009, Proceedings of the National Academy of Sciences.

[30]  R. Huber,et al.  Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity. , 2003, Journal of molecular biology.

[31]  Pauline M Rudd,et al.  A variant human IgG1-Fc mediates improved ADCC. , 2011, Protein engineering, design & selection : PEDS.

[32]  R. Faggioni,et al.  Whole-molecule antibody engineering: generation of a high-affinity anti-IL-6 antibody with extended pharmacokinetics. , 2011, Journal of molecular biology.

[33]  Sandeep Yadav,et al.  Viscosity behavior of high-concentration monoclonal antibody solutions: correlation with interaction parameter and electroviscous effects. , 2012, Journal of pharmaceutical sciences.

[34]  J. Foote,et al.  Kinetic and affinity limits on antibodies produced during immune responses. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[35]  A. Minton,et al.  Intermolecular interactions of IgG1 monoclonal antibodies at high concentrations characterized by light scattering. , 2010, The journal of physical chemistry. B.

[36]  L. Silvian,et al.  Improving the solubility of anti‐LINGO‐1 monoclonal antibody Li33 by isotype switching and targeted mutagenesis , 2010, Protein science : a publication of the Protein Society.

[37]  A George,et al.  Predicting protein crystallization from a dilute solution property. , 1994, Acta crystallographica. Section D, Biological crystallography.

[38]  D. Dunstan,et al.  The effects of shear flow on protein structure and function , 2011, Biopolymers.

[39]  Uno Carlsson,et al.  Reduction of Irreversible Protein Adsorption on Solid Surfaces by Protein Engineering for Increased Stability* , 2005, Journal of Biological Chemistry.

[40]  W. Norde,et al.  Adsorption of proteins from solution at the solid-liquid interface. , 1986, Advances in colloid and interface science.

[41]  A. Minton,et al.  Influence of macromolecular crowding upon the stability and state of association of proteins: predictions and observations. , 2005, Journal of pharmaceutical sciences.

[42]  Theodore W Randolph,et al.  Understanding and modulating opalescence and viscosity in a monoclonal antibody formulation. , 2010, Journal of pharmaceutical sciences.

[43]  Georges Belfort,et al.  Protein structural perturbation and aggregation on homogeneous surfaces. , 2005, Biophysical journal.

[44]  Leonard G Presta,et al.  Molecular engineering and design of therapeutic antibodies. , 2008, Current opinion in immunology.

[45]  Joey Pollastrini,et al.  Response of a concentrated monoclonal antibody formulation to high shear , 2009, Biotechnology and bioengineering.

[46]  Dusan Bratko,et al.  Protein aggregation in silico. , 2007, Trends in biotechnology.

[47]  Van V. Brantner,et al.  Spending on new drug development1. , 2010, Health economics.

[48]  Jennifer R Litowski,et al.  High-throughput dynamic light scattering method for measuring viscosity of concentrated protein solutions. , 2010, Analytical biochemistry.

[49]  D. Clapham,et al.  Ion channels--basic science and clinical disease. , 1997, The New England journal of medicine.

[50]  W. Weng,et al.  Two immunoglobulin G fragment C receptor polymorphisms independently predict response to rituximab in patients with follicular lymphoma. , 2003, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[51]  R. Ionescu,et al.  Fragmentation of monoclonal antibodies , 2011, mAbs.

[52]  Charles S Henry,et al.  Colloidal behavior of proteins: effects of the second virial coefficient on solubility, crystallization and aggregation of proteins in aqueous solution. , 2005, Current pharmaceutical biotechnology.

[53]  Patrick Garidel,et al.  A critical evaluation of self-interaction chromatography as a predictive tool for the assessment of protein-protein interactions in protein formulation development: a case study of a therapeutic monoclonal antibody. , 2010, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[54]  P. Carter,et al.  Introduction to current and future protein therapeutics: a protein engineering perspective. , 2011, Experimental cell research.

[55]  I. Kola,et al.  Can the pharmaceutical industry reduce attrition rates? , 2004, Nature Reviews Drug Discovery.

[56]  Herren Wu,et al.  Modulation of the Effector Functions of a Human IgG1 through Engineering of Its Hinge Region , 2006, The Journal of Immunology.

[57]  J. Reichert,et al.  Development trends for human monoclonal antibody therapeutics , 2010, Nature Reviews Drug Discovery.

[58]  Steven J Shire,et al.  Reversible self-association increases the viscosity of a concentrated monoclonal antibody in aqueous solution. , 2005, Journal of pharmaceutical sciences.

[59]  Herren Wu,et al.  Properties of Human IgG1s Engineered for Enhanced Binding to the Neonatal Fc Receptor (FcRn)* , 2006, Journal of Biological Chemistry.

[60]  C. Radke,et al.  Reduced protein adsorption at solid interfaces by sugar excipients , 2004, Biotechnology and bioengineering.

[61]  J. DiMasi,et al.  The cost of biopharmaceutical R&D: is biotech different? , 2007 .

[62]  Sandeep Yadav,et al.  Use of dynamic light scattering to determine second virial coefficient in a semidilute concentration regime. , 2011, Analytical biochemistry.

[63]  E. Topp,et al.  Effect of protein structure on deamidation rate in the Fc fragment of an IgG1 monoclonal antibody , 2009, Protein science : a publication of the Protein Society.

[64]  D. Kalonia,et al.  A High-Throughput Method for Detection of Protein Self-Association and Second Virial Coefficient Using Size-Exclusion Chromatography Through Simultaneous Measurement of Concentration and Scattered Light Intensity , 2007, Pharmaceutical Research.

[65]  K. Shitara,et al.  Engineered therapeutic antibodies with improved effector functions , 2009, Cancer science.

[66]  C. Dobson,et al.  Rational design of aggregation-resistant bioactive peptides: reengineering human calcitonin. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[67]  John F. Carpenter,et al.  Physical Stability of Proteins in Aqueous Solution: Mechanism and Driving Forces in Nonnative Protein Aggregation , 2003, Pharmaceutical Research.

[68]  D. R. Anderson,et al.  Targeted anti-cancer therapy using rituximab, a chimaeric anti-CD20 antibody (IDEC-C2B8) in the treatment of non-Hodgkin's B-cell lymphoma. , 1997, Biochemical Society transactions.

[69]  M Goodall,et al.  The influence of glycosylation on the thermal stability and effector function expression of human IgG1-Fc: properties of a series of truncated glycoforms. , 2000, Molecular immunology.

[70]  Deborah S. Goldberg,et al.  Formulation development of therapeutic monoclonal antibodies using high-throughput fluorescence and static light scattering techniques: role of conformational and colloidal stability. , 2011, Journal of pharmaceutical sciences.