Programmable enzymatic oxidation of tyrosine-lysine tetrapeptides.

The ability to control the response of self-assembled systems upon exposure to external stimuli has been a long-standing goal of supramolecular chemistry. Short peptides are an attractive platform to realise this objective due to their chemical diversity and modular nature. Here, we synthesise a library of Fmoc-capped tetrapeptides, each containing two tyrosine and two lysine residues and varying in their amino acid sequence. Despite having similar secondary structure, these tetrapeptides form structures which are highly sequence dependent, yielding aggregates, nanofibres or monomers. This in turn highly affects the rate and degree of oxidative polymerisation by the enzyme tyrosinase, with self-assembled nanofibres exhibiting a greater degree of polymerisation. We monitor the formation of tyrosine oxidation products over time, finding that the precipitation of polymers is driven by quinone-based species. This affects the electrochemical properties of the oxidised peptide polymers, as determined through electrical impedance spectroscopy. Finally, intrinsic fluorescence microscale thermophoresis studies confirm that the degree of oxidative polymerisation is highly dependent on tyrosine solvent accessibility and the presence of peptide monomers. The ability to tune the kinetics of enzymatically active substrates and understand their polymerisation pathways on a molecular level is important for the creation of programmable, enzyme responsive biomaterials.

[1]  T. Fath,et al.  Decoupling the effects of hydrophilic and hydrophobic moieties at the neuron–nanofibre interface† , 2019, Chemical science.

[2]  D. Willbold,et al.  Towards the mode of action of the clinical stage all-D-enantiomeric peptide RD2 on Aβ42 aggregation. , 2019, ACS chemical neuroscience.

[3]  D. Finkelstein,et al.  Migration and Differentiation of Neural Stem Cells Diverted From the Subventricular Zone by an Injectable Self-Assembling β-Peptide Hydrogel , 2019, Front. Bioeng. Biotechnol..

[4]  A. Grodzinsky,et al.  Trypsin Pre‐Treatment Combined With Growth Factor Functionalized Self‐Assembling Peptide Hydrogel Improves Cartilage Repair in Rabbit Model , 2019, Journal of orthopaedic research : official publication of the Orthopaedic Research Society.

[5]  M. Weingarth,et al.  Design Parameters of Tissue‐Engineering Scaffolds at the Atomic Scale , 2019, Angewandte Chemie.

[6]  Matthew J Sis,et al.  Drug Delivery with Designed Peptide Assemblies. , 2019, Trends in pharmacological sciences.

[7]  Bing Xu,et al.  Enzyme-Instructed Peptide Assemblies Selectively Inhibit Bone Tumors. , 2019, Chem.

[8]  Sijie Chen,et al.  Design of self-assembly dipeptide hydrogels and machine learning via their chemical features , 2019, Proceedings of the National Academy of Sciences.

[9]  R. Rambo,et al.  Melanin production by tyrosinase activity on a tyrosine-rich peptide fragment and pH-dependent self-assembly of its lipidated analogue. , 2019, Organic & biomolecular chemistry.

[10]  B. Nilsson,et al.  Rippled β-Sheet Formation by an Amyloid-β Fragment Indicates Expanded Scope of Sequence Space for Enantiomeric β-Sheet Peptide Coassembly , 2019, Molecules.

[11]  Ruirui Xing,et al.  The Dominant Role of Oxygen in Modulating the Chemical Evolution Pathways of Tyrosine in Peptides: Dityrosine or Melanin. , 2019, Angewandte Chemie.

[12]  Guanghong Wei,et al.  Expanding the Functional Scope of the Fmoc‐Diphenylalanine Hydrogelator by Introducing a Rigidifying and Chemically Active Urea Backbone Modification , 2019, Advanced science.

[13]  C. Hauser,et al.  Thin peptide hydrogel membranes suitable as scaffolds for engineering layered biostructures. , 2019, Acta biomaterialia.

[14]  E. Kumacheva,et al.  Design and applications of man-made biomimetic fibrillar hydrogels , 2019, Nature Reviews Materials.

[15]  C. Giannini,et al.  Fmoc-FF and hexapeptide-based multicomponent hydrogels as scaffold materials. , 2019, Soft matter.

[16]  M. Coletta,et al.  Ubiquitin binds the amyloid β peptide and interferes with its clearance pathways† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc03394c , 2019, Chemical science.

[17]  A. Magyar,et al.  Amino acid based polymer hydrogel with enzymatically degradable cross-links , 2018, Reactive and Functional Polymers.

[18]  Bing Xu,et al.  Instructed Assembly of Peptides for Intracellular Enzyme Sequestration. , 2018, Journal of the American Chemical Society.

[19]  Jaehun Lee,et al.  Tyrosine‐Rich Peptides as a Platform for Assembly and Material Synthesis , 2018, Advanced science.

[20]  Nathaniel S. Hwang,et al.  Tissue adhesive, rapid forming, and sprayable ECM hydrogel via recombinant tyrosinase crosslinking. , 2018, Biomaterials.

[21]  Michele Melchionna,et al.  Chirality Effects on Peptide Self-Assembly Unraveled from Molecules to Materials , 2018, Chem.

[22]  J. Schneider,et al.  Enzymatic Control of the Conformational Landscape of Self-Assembling Peptides. , 2018, Angewandte Chemie.

[23]  S. Panda,et al.  Solid-state electrical applications of protein and peptide based nanomaterials. , 2018, Chemical Society reviews.

[24]  Caleb F. Anderson,et al.  Peptide-based nanoprobes for molecular imaging and disease diagnostics. , 2018, Chemical Society reviews.

[25]  Siewert J. Marrink,et al.  Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments , 2018, Chemical Society reviews.

[26]  L. Deng,et al.  Enzymatic Formation of an Injectable Hydrogel from a Glycopeptide as a Biomimetic Scaffold for Vascularization. , 2018, ACS applied materials & interfaces.

[27]  M. Soler‐Lopez,et al.  Structure and Function of Human Tyrosinase and Tyrosinase-Related Proteins. , 2018, Chemistry.

[28]  I. Hamley Small Bioactive Peptides for Biomaterials Design and Therapeutics. , 2017, Chemical reviews.

[29]  Ehud Gazit,et al.  Self-assembling peptide semiconductors , 2017, Science.

[30]  L. White,et al.  Peptide Hydrogels—A Tissue Engineering Strategy for the Prevention of Oesophageal Strictures , 2017 .

[31]  H. Möhwald,et al.  Self-Assembled Injectable Peptide Hydrogels Capable of Triggering Antitumor Immune Response. , 2017, Biomacromolecules.

[32]  E. Gazit,et al.  Studying structure and dynamics of self-assembled peptide nanostructures using fluorescence and super resolution microscopy. , 2017, Chemical communications.

[33]  J. Lu,et al.  Self-Assembly of Mesoscopic Peptide Surfactant Fibrils Investigated by STORM Super-Resolution Fluorescence Microscopy. , 2017, Biomacromolecules.

[34]  Pim W. J. M. Frederix,et al.  Polymeric peptide pigments with sequence-encoded properties , 2017, Science.

[35]  E. Furst,et al.  Molecular, Local, and Network-Level Basis for the Enhanced Stiffness of Hydrogel Networks Formed from Coassembled Racemic Peptides: Predictions from Pauling and Corey , 2017, ACS central science.

[36]  C. Heu,et al.  Controlling self-assembly of diphenylalanine peptides at high pH using heterocyclic capping groups , 2017, Scientific Reports.

[37]  Hajime Shigemitsu,et al.  Design Strategies of Stimuli-Responsive Supramolecular Hydrogels Relying on Structural Analyses and Cell-Mimicking Approaches. , 2017, Accounts of chemical research.

[38]  D. Adams,et al.  Probing the surface chemistry of self-assembled peptide hydrogels using solution-state NMR spectroscopy. , 2017, Soft matter.

[39]  A. N. Moore,et al.  Self-Assembling Multidomain Peptide Nanofibers for Delivery of Bioactive Molecules and Tissue Regeneration , 2017, Accounts of chemical research.

[40]  Molly M. Stevens,et al.  Controlled Sub-Nanometer Epitope Spacing in a Three-Dimensional Self-Assembled Peptide Hydrogel. , 2016, ACS nano.

[41]  A. Ittner SITE-SPECIFIC PHOSPHORYLATION OF TAU INHIBITS AMYLOID-β TOXICITY IN ALZHEIMER’S MICE , 2016, Alzheimer's & Dementia.

[42]  Vivek T. Natarajan,et al.  Bioinspired Functionalized Melanin Nanovariants with a Range of Properties Provide Effective Color Matched Photoprotection in Skin. , 2016, Biomacromolecules.

[43]  Ryou Kubota,et al.  In situ real-time imaging of self-sorted supramolecular nanofibres. , 2016, Nature chemistry.

[44]  P. Perlmutter,et al.  Orthogonal strategy for the synthesis of dual-functionalised β(3)-peptide based hydrogels. , 2016, Chemical communications.

[45]  P. Thordarson,et al.  Effect of heterocyclic capping groups on the self-assembly of a dipeptide hydrogel. , 2016, Soft matter.

[46]  Jie Zhou,et al.  Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials , 2015, Chemical reviews.

[47]  D. Adams,et al.  Using solution state NMR spectroscopy to probe NMR invisible gelators. , 2015, Soft matter.

[48]  R. Tycko,et al.  Molecular structure of monomorphic peptide fibrils within a kinetically trapped hydrogel network , 2015, Proceedings of the National Academy of Sciences.

[49]  M. Panhuis,et al.  Electrical conductivity, impedance, and percolation behavior of carbon nanofiber and carbon nanotube containing gellan gum hydrogels , 2014 .

[50]  I. Hamachi,et al.  Installing logic-gate responses to a variety of biological substances in supramolecular hydrogel-enzyme hybrids. , 2014, Nature chemistry.

[51]  D. Kirchmajer,et al.  Enhanced gelation properties of purified gellan gum. , 2014, Carbohydrate research.

[52]  Yi Cao,et al.  Photo-cross-linking approach to engineering small tyrosine-containing peptide hydrogels with enhanced mechanical stability. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[53]  Rein V Ulijn,et al.  Assessing the utility of infrared spectroscopy as a structural diagnostic tool for β-sheets in self-assembling aromatic peptide amphiphiles. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[54]  Mi Zhou,et al.  Self-assembled peptide-based hydrogels as scaffolds for anchorage-dependent cells. , 2009, Biomaterials.

[55]  Bing Xu,et al.  Supramolecular hydrogel of a D-amino acid dipeptide for controlled drug release in vivo. , 2009, Langmuir : the ACS journal of surfaces and colloids.

[56]  Rein V. Ulijn,et al.  Fmoc‐Diphenylalanine Self Assembles to a Hydrogel via a Novel Architecture Based on π–π Interlocked β‐Sheets , 2008 .

[57]  E. Gazit,et al.  Self-assembly of peptide nanotubes and amyloid-like structures by charged-termini-capped diphenylalanine peptide analogues , 2005 .

[58]  Joel H Collier,et al.  Enzymatic modification of self-assembled peptide structures with tissue transglutaminase. , 2003, Bioconjugate chemistry.

[59]  Daniela Kalafatovic,et al.  Exploring the sequence space for (tri-)peptide self-assembly to design and discover new hydrogels. , 2015, Nature chemistry.

[60]  N. Greenfield Using circular dichroism spectra to estimate protein secondary structure , 2007, Nature Protocols.