Detection of Helicobacter pylori with a nanobiosensor based on fluorescence resonance energy transfer using CdTe quantum dots

AbstractWe report on a method for the sensitive determination of Helicobacter that is based on fluorescence resonance energy transfer using two oligonucleotide probes labeled with CdTe quantum dots (QDs) and 5-carboxytetramethylrhodamine (Tamra) respectively. QDs labeled with an amino-modified first oligonucleotide, and a Tamra-labeled second oligonucleotide were added to the DNA targets upon which hybridization occurred. The resulting assembly brings the Tamra fluorophore (the acceptor) and the QDs (the donor) into close proximity and causes fluorescence resonance energy transfer (FRET) to occur upon photoexcitation of the donor. In the absence of target DNA, on the other hand, the probes are not ligated, and no emission by the Tamra fluorophore is produced due to the lack of FRET. The feasibility of the method was demonstrated by the detection of a synthetic 210-mer nucleotide derived from Helicobacter on a nanomolar level. This homogeneous DNA detection scheme is simple, rapid and efficient, does not require excessive washing and separation steps, and is likely to be useful for the construction of a nanobiosensor for Helicobacter species. Graphical AbstractWe report a method for the sensitive determination of Helicobacter that is based on fluorescence resonance energy transfer using two oligonucleotide probes labeled with CdTe quantum dots and 5-carboxytetramethylrhodamine respectively.The feasibility of the method was demonstrated by the detection of a synthetic 210-mer nucleotide derived from Helicobacter on a nanomolar level. This homogeneous DNA detection scheme is simple, rapid and efficient, does not require excessive washing and separation steps, and is likely to be useful for the construction of a nanobiosensor for Helicobacter species.

[1]  X. Hun,et al.  Dendrimer-based biosensor for chemiluminescent detection of DNA hybridization , 2011 .

[2]  Yuan-Cheng Cao,et al.  Fluorescence resonance energy transfer between FITC and water-soluble CdSe/ZnS quantum dots , 2007 .

[3]  I. Tirodimos,et al.  Detection of Helicobacter pylori in raw bovine milk by fluorescence in situ hybridization (FISH). , 2011, International journal of food microbiology.

[4]  Qiang Ma,et al.  Studies on fluorescence resonance energy transfer between dyes and water-soluble quantum dots. , 2005, Luminescence : the journal of biological and chemical luminescence.

[5]  Yunhua He,et al.  Chemiluminescence assay for angiogenin using a signal amplification technology based on the cleavage of nicking endonucleases , 2011 .

[6]  H. Fan,et al.  Controllable synthesis of CdSe nanostructures with tunable morphology and their application in DNA biosensor of Avian Influenza Virus , 2010 .

[7]  Mónica Revenga-Parra,et al.  Architectures based on the use of gold nanoparticles and ruthenium complexes as a new route to improve genosensor sensitivity. , 2008, Biosensors & bioelectronics.

[8]  Xiaodi Su,et al.  Serological determination of Helicobacter pylori infection using sandwiched and enzymatically amplified piezoelectric biosensor , 2001 .

[9]  H. Cheung,et al.  Internal movement in myosin subfragment 1 detected by fluorescence resonance energy transfer. , 1995, Biochemistry.

[10]  T. Soukka,et al.  Antibody-free lanthanide-based fluorescent probe for determination of protein tyrosine kinase and phosphatase activities , 2011 .

[11]  Igor L. Medintz,et al.  Luminescent Quantum Dot-Bioconjugates in Immunoassays, FRET, Biosensing, and Imaging Applications , 2004 .

[12]  J. Matthew Mauro,et al.  Self-Assembly of CdSe−ZnS Quantum Dot Bioconjugates Using an Engineered Recombinant Protein , 2000 .

[13]  V. Govorun,et al.  Phenylethynylpyrene-labeled oligonucleotide probes for excimer fluorescence SNP analysis of 23S rRNA gene in clarithromycin-resistant Helicobacter pylori strains. , 2006, Mutation research.

[14]  C. Alonso,et al.  DNA biosensor for detection of Helicobacter pylori using phen-dione as the electrochemically active ligand in osmium complexes. , 2005, Analytical chemistry.

[15]  Xuping Sun,et al.  CdS quantum dots as a fluorescent sensing platform for nucleic acid detection , 2011 .

[16]  Qisui Wang,et al.  Studies on CdSe/l-cysteine Quantum Dots Synthesized in Aqueous Solution for Biological Labeling , 2009 .

[17]  Amitkumar N. Lad,et al.  DNA-Labeled Gold-Based Optical Nanobiosensor Monitoring DNA–Mitoxantrone Interaction , 2012 .

[18]  R. Pereiro,et al.  The use of luminescent quantum dots for optical sensing , 2006 .

[19]  S. Choa,et al.  Diagnosis of Helicobacter pylori bacterial infections using a voltammetric biosensor. , 2011, Journal of microbiological methods.

[20]  A. Zaitoun Histology compared with chemical testing for urease for rapid detection of Helicobacter pylori in gastric biopsy specimens. , 1993, Journal of clinical pathology.

[21]  Jian-hui Jiang,et al.  Electrochemical DNA biosensor based on proximity-dependent DNA ligation assays with DNAzyme amplification of hairpin substrate signal. , 2010, Biosensors & bioelectronics.

[22]  Highly sensitive detection of lead(II) ion using multicolor CdTe quantum dots , 2011, Microchimica Acta.

[23]  Phan T. Tran,et al.  Use of Luminescent CdSe–ZnS Nanocrystal Bioconjugates in Quantum Dot‐Based Nanosensors , 2002 .

[24]  A. van der Ende,et al.  Of microbe and man: determinants of Helicobacter pylori-related diseases. , 2006, FEMS microbiology reviews.

[25]  Igor L. Medintz,et al.  A Reagentless Biosensing Assembly Based on Quantum Dot–Donor Förster Resonance Energy Transfer , 2005 .

[26]  Xiwen He,et al.  Study on the fluorescence resonance energy transfer between CdTe QDs and butyl-rhodamine B in the presence of CTMAB and its application on the detection of Hg(II). , 2008, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[27]  I. Willner,et al.  Fluorescence resonance energy transfer in CdSe/ZnS-DNA conjugates: probing hybridization and DNA cleavage. , 2005, The journal of physical chemistry. B.

[28]  Guoqing Hu,et al.  Development of a novel electrokinetically driven microfluidic immunoassay for the detection of Helic , 2005 .

[29]  M. Osborne,et al.  Photodynamics of a single quantum dot: fluorescence activation, enhancement, intermittency, and decay. , 2007, Journal of the American Chemical Society.

[30]  Julio Raba,et al.  Laser-induced fluorescence integrated in a microfluidic immunosensor for quantification of human serum IgG antibodies to Helicobacter pylori , 2012 .

[31]  Andrey L. Rogach,et al.  Cascaded FRET in conjugated polymer/quantum dot/dye-labeled DNA complexes for DNA hybridization detection. , 2009, ACS nano.

[32]  K. Krogfelt,et al.  Molecular methods for typing of Helicobacter pylori and their applications. , 1999, FEMS immunology and medical microbiology.

[33]  F. Pariente,et al.  Comprehensive study of interactions between DNA and new electroactive Schiff base ligands. Application to the detection of singly mismatched Helicobacter pylori sequences. , 2007, Biosensors & bioelectronics.

[34]  P. Sherman,et al.  Serological detection of Helicobacter pylori antibodies in children and their parents , 1994, Journal of clinical microbiology.

[35]  Igor L. Medintz,et al.  Quantum dot bioconjugates for imaging, labelling and sensing , 2005, Nature materials.

[36]  B. Buszewski,et al.  Rapid identification of Helicobacter pylori by capillary electrophoresis: an overview. , 2007, Biomedical chromatography : BMC.

[37]  Igor L. Medintz,et al.  Solution-phase single quantum dot fluorescence resonance energy transfer. , 2006, Journal of the American Chemical Society.

[38]  M. Shamsipur,et al.  A novel quantum dot-laccase hybrid nanobiosensor for low level determination of dopamine. , 2012, The Analyst.

[39]  L. Brand,et al.  Resonance energy transfer: methods and applications. , 1994, Analytical biochemistry.

[40]  U. Krull,et al.  Towards multi-colour strategies for the detection of oligonucleotide hybridization using quantum dots as energy donors in fluorescence resonance energy transfer (FRET). , 2007, Analytica chimica acta.

[41]  Cherie R. Kagan,et al.  Long-range resonance transfer of electronic excitations in close-packed CdSe quantum-dot solids. , 1996, Physical review. B, Condensed matter.

[42]  Igor L. Medintz,et al.  Fluorescence resonance energy transfer between quantum dot donors and dye-labeled protein acceptors. , 2003, Journal of the American Chemical Society.

[43]  N. Arnaud,et al.  Limitations Arising from Optical Saturation in Fluorescence and Thermal Lens Spectrometries Using Pulsed Laser Excitation: Application to the Determination of the Fluorescence Quantum Yield of Rhodamine 6G , 1996 .

[44]  H. Abruña,et al.  Single-mismatch position-sensitive detection of DNA based on a bifunctional ruthenium complex. , 2008, Analytical chemistry.