Construction of model Hamiltonians for adiabatic quantum computation and its application to finding low-energy conformations of lattice protein models
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[1] J. Biamonte. Non−perturbative k−body to two−body commuting conversion Hamiltonians and embedding problem instances into Ising spins , 2008, 0801.3800.
[2] Kathleen Steinhöfel,et al. Relating time complexity of protein folding simulation to approximations of folding time , 2007, Comput. Phys. Commun..
[3] M. W. Johnson,et al. Sign- and magnitude-tunable coupler for superconducting flux qubits , 2006, cond-mat/0608253.
[4] David P. DiVincenzo,et al. The complexity of stoquastic local Hamiltonian problems , 2006, Quantum Inf. Comput..
[5] Roy L Johnston,et al. Analyzing energy landscapes for folding model proteins. , 2006, The Journal of chemical physics.
[6] Eugene Shakhnovich,et al. Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet. , 2006, Chemical reviews.
[7] M. Head‐Gordon,et al. Simulated Quantum Computation of Molecular Energies , 2005, Science.
[8] Holger H. Hoos,et al. An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem , 2005, BMC Bioinformatics.
[9] Roy L. Johnston,et al. Development and optimisation of a novel genetic algorithm for studying model protein folding , 2004 .
[10] S. Lloyd,et al. Scalable Superconducting Architecture for Adiabatic Quantum Computation , 2004, quant-ph/0403090.
[11] M. Gruebele,et al. The fast protein folding problem. , 2003, Annual review of physical chemistry.
[12] Themis Lazaridis,et al. Thermodynamics of protein folding: a microscopic view. , 2002, Biophysical chemistry.
[13] Endre Boros,et al. Pseudo-Boolean optimization , 2002, Discret. Appl. Math..
[14] P. Grassberger,et al. Growth-based optimization algorithm for lattice heteropolymers. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[15] J. Onuchic,et al. Understanding protein folding with energy landscape theory Part I: Basic concepts , 2002, Quarterly Reviews of Biophysics.
[16] Hao Li,et al. Designability of protein structures: A lattice‐model study using the Miyazawa‐Jernigan matrix , 2002, Proteins.
[17] E. Farhi,et al. A Quantum Adiabatic Evolution Algorithm Applied to Random Instances of an NP-Complete Problem , 2001, Science.
[18] D. DiVincenzo,et al. The Physical Implementation of Quantum Computation , 2000, quant-ph/0002077.
[19] K. Dill,et al. A fast conformational search strategy for finding low energy structures of model proteins , 1996, Protein science : a publication of the Protein Society.
[20] S. Toma,et al. Contact interactions method: A new algorithm for protein folding simulations , 1996, Protein science : a publication of the Protein Society.
[21] D. Yee,et al. Principles of protein folding — A perspective from simple exact models , 1995, Protein science : a publication of the Protein Society.
[22] E I Shakhnovich,et al. A test of lattice protein folding algorithms. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[23] D A Agard,et al. Kinetics versus thermodynamics in protein folding. , 1994, Biochemistry.
[24] K. Dill,et al. The protein folding problem. , 1993, Annual review of biophysics.
[25] R Unger,et al. Genetic algorithms for protein folding simulations. , 1992, Journal of molecular biology.
[26] H. Berg. Cold Spring Harbor Symposia on Quantitative Biology.: Vol. LII. Evolution of Catalytic Functions. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 1987, ISBN 0-87969-054-2, xix + 955 pp., US $150.00. , 1989 .
[27] K. Dill,et al. A lattice statistical mechanics model of the conformational and sequence spaces of proteins , 1989 .
[28] J. Linnett,et al. Quantum mechanics , 1975, Nature.
[29] Helio J. C. Barbosa,et al. Investigation of the three-dimensional lattice HP protein folding model using a genetic algorithm , 2004 .
[30] P. Drummond,et al. Computer Physics Communications , 2001 .
[31] L. Mirny,et al. Protein folding theory: from lattice to all-atom models. , 2001, Annual review of biophysics and biomolecular structure.
[32] Mihalis Yannakakis,et al. On the Complexity of Protein Folding , 1998, J. Comput. Biol..
[33] B. Berger,et al. Protein Folding in the Hydrophobic-Hydrophilic(HP) Model is NP-Complete , 1998, J. Comput. Biol..
[34] Kenneth H. Rosen. Discrete mathematics and its applications , 1984 .
[35] C. Epstein,et al. The Genetic Control of Tertiary Protein Structure: Studies With Model Systems , 1963 .
[36] G. Giacomello,et al. Proteins structure. , 1957, Scientia medica italica. English ed.