How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
暂无分享,去创建一个
Sean D. Taverna | D. Patel | C. Allis | Haitao Li | A. Ruthenburg | Dinshaw J Patel | C David Allis | Sean D Taverna | Haitao Li | Alexander J Ruthenburg
[1] Wolfgang Fischle,et al. Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger. , 2007, Molecular cell.
[2] John A Latham,et al. Cross-regulation of histone modifications , 2007, Nature Structural &Molecular Biology.
[3] Yingming Zhao,et al. JMJD6 Is a Histone Arginine Demethylase , 2007, Science.
[4] Jürg Bähler,et al. Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation , 2007, Nature.
[5] E. Guccione,et al. Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive , 2007, Nature.
[6] Matthias Mann,et al. Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4 , 2007, Cell.
[7] T. Swigut,et al. H3K27 Demethylases, at Long Last , 2007, Cell.
[8] B. Cairns,et al. Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation. , 2007, Molecular cell.
[9] Min Gyu Lee,et al. p53 is regulated by the lysine demethylase LSD1 , 2007, Nature.
[10] C. Allis,et al. Chromatin remodeling and cancer, Part I: Covalent histone modifications. , 2007, Trends in molecular medicine.
[11] V. Pirrotta,et al. CHD1 Motor Protein Is Required for Deposition of Histone Variant H3.3 into Chromatin in Vivo , 2007, Science.
[12] B. Chait,et al. Methylation of a histone mimic within the histone methyltransferase G9a regulates protein complex assembly. , 2007, Molecular cell.
[13] Yang Shi,et al. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression , 2007, Nature.
[14] C. Allis,et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA , 2007, Nature.
[15] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[16] Monika S. Kowalczyk,et al. Structural consequences of disease-causing mutations in the ATRX-DNMT3-DNMT3L (ADD) domain of the chromatin-associated protein ATRX , 2007, Proceedings of the National Academy of Sciences.
[17] R. Young,et al. A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.
[18] S. Khorasanizadeh,et al. Recognition of trimethyllysine by a chromodomain is not driven by the hydrophobic effect , 2007, Proceedings of the National Academy of Sciences.
[19] M. Nussenzweig,et al. Chromatin dynamics and the preservation of genetic information , 2007, Nature.
[20] J. Gaudet,et al. Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity. , 2007, Cancer cell.
[21] Neil L Kelleher,et al. Pervasive combinatorial modification of histone H3 in human cells , 2007, Nature Methods.
[22] D. Reinberg,et al. L3MBTL1, a Histone-Methylation-Dependent Chromatin Lock , 2007, Cell.
[23] S. Berger. The complex language of chromatin regulation during transcription , 2007, Nature.
[24] A. Feinberg. Phenotypic plasticity and the epigenetics of human disease , 2007, Nature.
[25] Bing Li,et al. Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin , 2007, Science.
[26] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[27] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[28] Alan J Tackett,et al. Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini , 2007, Proceedings of the National Academy of Sciences.
[29] M. Horikoshi,et al. Structural polymorphism of chromodomains in Chd1. , 2007, Journal of molecular biology.
[30] Yang Shi,et al. Dynamic regulation of histone lysine methylation by demethylases. , 2007, Molecular cell.
[31] C. Allis,et al. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. , 2007, Molecular cell.
[32] Georges Mer,et al. Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair , 2006, Cell.
[33] John D Aitchison,et al. Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. , 2006, Molecular cell.
[34] Michael Grunstein,et al. Histone H2B deacetylation at lysine 11 is required for yeast apoptosis induced by phosphorylation of H2B at serine 10. , 2006, Molecular cell.
[35] Alexey Bochkarev,et al. Structural basis for molecular recognition and presentation of histone H3 By WDR5 , 2006, The EMBO journal.
[36] Yi Zhang,et al. JmjC-domain-containing proteins and histone demethylation , 2006, Nature Reviews Genetics.
[37] Michael Grunstein,et al. Genome-wide patterns of histone modifications in yeast , 2006, Nature Reviews Molecular Cell Biology.
[38] Or Gozani,et al. The Yng1p Plant Homeodomain Finger Is a Methyl-Histone Binding Module That Recognizes Lysine 4-Methylated Histone H3 , 2006, Molecular and Cellular Biology.
[39] Thomas A Milne,et al. Regulation of MLL1 H3K4 methyltransferase activity by its core components , 2006, Nature Structural &Molecular Biology.
[40] Paul Tempst,et al. The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36 , 2006, Nature.
[41] Jean-François Couture,et al. Molecular recognition of histone H3 by the WD40 protein WDR5 , 2006, Nature Structural &Molecular Biology.
[42] D. Patel,et al. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF , 2006, Nature.
[43] Anjanabha Saha,et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression , 2006, Nature.
[44] Thomas A. Milne,et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling , 2006, Nature.
[45] V. Verkhusha,et al. Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2 , 2006, Nature.
[46] D. Patel,et al. Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex , 2006, Nature Structural &Molecular Biology.
[47] T. Pawson,et al. Reading protein modifications with interaction domains , 2006, Nature Reviews Molecular Cell Biology.
[48] A. Baldwin,et al. The Kinases MSK1 and MSK2 Are Required for Epidermal Growth Factor-induced, but Not Tumor Necrosis Factor-induced, Histone H3 Ser10 Phosphorylation* , 2006, Journal of Biological Chemistry.
[49] Yi Zhang,et al. Recognition of Histone H3 Lysine-4 Methylation by the Double Tudor Domain of JMJD2A , 2006, Science.
[50] Yang Shi,et al. Reversal of Histone Lysine Trimethylation by the JMJD2 Family of Histone Demethylases , 2006, Cell.
[51] M. Bottomley,et al. Structure and functional analysis of the MYND domain. , 2006, Journal of molecular biology.
[52] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[53] Xing Wang Deng,et al. Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5. , 2006, Molecular cell.
[54] Yi Zhang,et al. Tudor, MBT and chromo domains gauge the degree of lysine methylation , 2006, EMBO reports.
[55] M. Pazin,et al. Histone H4-K16 Acetylation Controls Chromatin Structure and Protein Interactions , 2006, Science.
[56] Song Tan,et al. ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation. , 2006, Molecular cell.
[57] B. Garcia,et al. Expression Patterns and Post-translational Modifications Associated with Mammalian Histone H3 Variants* , 2006, Journal of Biological Chemistry.
[58] M. Bienz. The PHD finger, a nuclear protein-interaction domain. , 2006, Trends in biochemical sciences.
[59] M. Yaffe,et al. MDC1 Directly Binds Phosphorylated Histone H2AX to Regulate Cellular Responses to DNA Double-Strand Breaks , 2008, Cell.
[60] Danny Reinberg,et al. Human but Not Yeast CHD1 Binds Directly and Selectively to Histone H3 Methylated at Lysine 4 via Its Tandem Chromodomains* , 2005, Journal of Biological Chemistry.
[61] Kevin Struhl,et al. Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. , 2005, Molecular cell.
[62] S. Khorasanizadeh,et al. Double chromodomains cooperate to recognize the methylated histone H3 tail , 2005, Nature.
[63] Jesse J. Lipp,et al. Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin , 2005, Nature.
[64] Benjamin A. Garcia,et al. Regulation of HP1–chromatin binding by histone H3 methylation and phosphorylation , 2005, Nature.
[65] Bing Li,et al. Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription , 2005, Cell.
[66] Cyrus Martin,et al. The diverse functions of histone lysine methylation , 2005, Nature Reviews Molecular Cell Biology.
[67] G. Orphanides,et al. Molecular basis for the recognition of phosphorylated and phosphoacetylated histone h3 by 14-3-3. , 2005, Molecular cell.
[68] J. Glover,et al. Structure of the BRCT Repeat Domain of MDC1 and Its Specificity for the Free COOH-terminal End of the γ-H2AX Histone Tail* , 2005, Journal of Biological Chemistry.
[69] Megan F. Cole,et al. Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast , 2005, Cell.
[70] Thomas A. Milne,et al. WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development , 2005, Cell.
[71] Robert E Collins,et al. Structural and sequence motifs of protein (histone) methylation enzymes. , 2005, Annual review of biophysics and biomolecular structure.
[72] John R. Yates,et al. Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation , 2005, Nature.
[73] Sung-Hee Ahn,et al. Sterile 20 Kinase Phosphorylates Histone H2B at Serine 10 during Hydrogen Peroxide-Induced Apoptosis in S. cerevisiae , 2005, Cell.
[74] J. T. Kadonaga,et al. Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly , 2005, Nature Structural &Molecular Biology.
[75] Yang Shi,et al. Histone Demethylation Mediated by the Nuclear Amine Oxidase Homolog LSD1 , 2004, Cell.
[76] J. Mata,et al. Methylation of Histone H4 Lysine 20 Controls Recruitment of Crb2 to Sites of DNA Damage , 2004, Cell.
[77] Tom J. Petty,et al. Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks , 2004, Nature.
[78] Jef D Boeke,et al. Regulated nucleosome mobility and the histone code , 2004, Nature Structural &Molecular Biology.
[79] Danny Reinberg,et al. Elongation by RNA polymerase II: the short and long of it. , 2004, Genes & development.
[80] Steven Clarke,et al. Human PAD4 Regulates Histone Arginine Methylation Levels via Demethylimination , 2004, Science.
[81] Paul Tempst,et al. Histone Deimination Antagonizes Arginine Methylation , 2004, Cell.
[82] W. Herr,et al. Leukemia Proto-Oncoprotein MLL Forms a SET1-Like Histone Methyltransferase Complex with Menin To Regulate Hox Gene Expression , 2004, Molecular and Cellular Biology.
[83] R. Roeder,et al. Ordered Cooperative Functions of PRMT1, p300, and CARM1 in Transcriptional Activation by p53 , 2004, Cell.
[84] Drew M. Lowery,et al. Structure and mechanism of BRCA1 BRCT domain recognition of phosphorylated BACH1 with implications for cancer , 2004, Nature Structural &Molecular Biology.
[85] D. Morrison,et al. Unlocking the code of 14-3-3 , 2004, Journal of Cell Science.
[86] Victor G Corces,et al. Phosphorylation of histone H3: a balancing act between chromosome condensation and transcriptional activation. , 2004, Trends in genetics : TIG.
[87] H. Szerlong,et al. Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14 , 2004, The EMBO journal.
[88] Wolfgang Fischle,et al. Binary switches and modification cassettes in histone biology and beyond , 2003, Nature.
[89] J. Min,et al. Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27. , 2003, Genes & development.
[90] Youngchang Kim,et al. Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. , 2003, Genes & development.
[91] D. Patel,et al. Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets. , 2003, Structure.
[92] Geng Wu,et al. Structure of a -TrCP1-Skp1--Catenin Complex , 2003 .
[93] Stuart Thomson,et al. MSK2 and MSK1 mediate the mitogen‐ and stress‐induced phosphorylation of histone H3 and HMG‐14 , 2003, The EMBO journal.
[94] P. Boccuni,et al. The Human L(3)MBT Polycomb Group Protein Is a Transcriptional Repressor and Interacts Physically and Functionally with TEL (ETV6)* , 2003, The Journal of Biological Chemistry.
[95] Michael Sattler,et al. High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues. , 2003, Journal of molecular biology.
[96] Phang-lang Chen,et al. NFBD1, Like 53BP1, Is an Early and Redundant Transducer Mediating Chk2 Phosphorylation in Response to DNA Damage* , 2003, The Journal of Biological Chemistry.
[97] Sebastian Maurer-Stroh,et al. The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains. , 2003, Trends in biochemical sciences.
[98] Geng Wu,et al. Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase. , 2003, Molecular cell.
[99] Stuart L. Schreiber,et al. Active genes are tri-methylated at K4 of histone H3 , 2002, Nature.
[100] R. Shiekhattar,et al. A core–BRAF35 complex containing histone deacetylase mediates repression of neuronal-specific genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[101] Alexey G. Murzin,et al. Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9 , 2002, Nature.
[102] S. Jacobs,et al. Structure of HP1 Chromodomain Bound to a Lysine 9-Methylated Histone H3 Tail , 2002, Science.
[103] Ming-Ming Zhou,et al. Bromodomain: an acetyl‐lysine binding domain , 2002, FEBS letters.
[104] T. Bestor,et al. Dnmt3L and the Establishment of Maternal Genomic Imprints , 2001, Science.
[105] Michael M. Murphy,et al. ATM Phosphorylates Histone H2AX in Response to DNA Double-strand Breaks* , 2001, The Journal of Biological Chemistry.
[106] N. Brown. Faculty Opinions recommendation of Crystal structure of the extracellular segment of integrin alpha Vbeta3. , 2001 .
[107] Sean D. Taverna,et al. Specificity of the HP1 chromo domain for the methylated N‐terminus of histone H3 , 2001, The EMBO journal.
[108] Thilo Stehle,et al. Crystal Structure of the Extracellular Segment of Integrin αVβ3 , 2001, Science.
[109] C. Allis,et al. Translating the Histone Code , 2001, Science.
[110] Brian D. Strahl,et al. Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1 , 2001, Current Biology.
[111] C. Allis,et al. Methylation of Histone H4 at Arginine 3 Facilitating Transcriptional Activation by Nuclear Hormone Receptor , 2001, Science.
[112] P. Chambon,et al. Heterochromatin formation in mammalian cells: interaction between histones and HP1 proteins. , 2001, Molecular cell.
[113] Karl Mechtler,et al. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins , 2001, Nature.
[114] Andrew J. Bannister,et al. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain , 2001, Nature.
[115] R. Shiekhattar,et al. A Human BRCA2 Complex Containing a Structural DNA Binding Component Influences Cell Cycle Progression , 2001, Cell.
[116] G. Stier,et al. SMN Tudor domain structure and its interaction with the Sm proteins , 2001, Nature Structural Biology.
[117] P. Evans,et al. The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase Gcn5p , 2000, The EMBO journal.
[118] C. Allis,et al. Signaling to Chromatin through Histone Modifications , 2000, Cell.
[119] C. Allis,et al. Heterochromatin protein 1 binds to nucleosomes and DNA in vitro. , 2000, The Journal of biological chemistry.
[120] Zu-Wen Sun,et al. Mitotic Phosphorylation of Histone H3 Is Governed by Ipl1/aurora Kinase and Glc7/PP1 Phosphatase in Budding Yeast and Nematodes , 2000, Cell.
[121] C. Allis,et al. Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation. , 2000, Molecular cell.
[122] R. Tjian,et al. Structure and function of a human TAFII250 double bromodomain module. , 2000, Science.
[123] C. Allis,et al. The language of covalent histone modifications , 2000, Nature.
[124] M. J. Barratt,et al. The nucleosomal response associated with immediate‐early gene induction is mediated via alternative MAP kinase cascades: MSK1 as a potential histone H3/HMG‐14 kinase , 1999, The EMBO journal.
[125] H. Saya,et al. A human homolog of Drosophila lethal(3)malignant brain tumor (l(3)mbt) protein associates with condensed mitotic chromosomes , 1999, Oncogene.
[126] Lei Zeng,et al. Structure and ligand of a histone acetyltransferase bromodomain , 1999, Nature.
[127] A. Wolffe,et al. Chromatin disruption and modification. , 1999, Nucleic acids research.
[128] E. Li,et al. Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases , 1998, Nature Genetics.
[129] E. Rogakou,et al. DNA Double-stranded Breaks Induce Histone H2AX Phosphorylation on Serine 139* , 1998, The Journal of Biological Chemistry.
[130] Bruce Stillman,et al. Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase , 1998, Current Biology.
[131] M. Yaffe,et al. The Structural Basis for 14-3-3:Phosphopeptide Binding Specificity , 1997, Cell.
[132] G. Mizuguchi,et al. Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin. , 1997, Molecular cell.
[133] D. A. Dougherty,et al. The Cationminus signpi Interaction. , 1997, Chemical reviews.
[134] V. Pirrotta,et al. Chromatin-silencing mechanisms in Drosophila maintain patterns of gene expression. , 1997, Trends in genetics : TIG.
[135] A. Wolffe,et al. Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone‐dependent transcriptional repression , 1997, The EMBO journal.
[136] C. Allis,et al. Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines , 1996, Nature.
[137] D. Edmondson,et al. Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4. , 1996, Genes & development.
[138] S. Schreiber,et al. A Mammalian Histone Deacetylase Related to the Yeast Transcriptional Regulator Rpd3p , 1996, Science.
[139] C. Allis,et al. Tetrahymena Histone Acetyltransferase A: A Homolog to Yeast Gcn5p Linking Histone Acetylation to Gene Activation , 1996, Cell.
[140] P. Allen,et al. Interaction of 14-3-3 with Signaling Proteins Is Mediated by the Recognition of Phosphoserine , 1996, Cell.
[141] Carl Wu,et al. Purification and properties of an ATP-dependent nucleosome remodeling factor , 1995, Cell.
[142] S. Sprang,et al. The structure of the G protein heterotrimer Giα1 β 1 γ 2 , 1995, Cell.
[143] S. Sprang,et al. The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2. , 1995, Cell.
[144] R. Paro,et al. The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[145] G. Petsko,et al. Weakly polar interactions in proteins. , 1988, Advances in protein chemistry.
[146] V. Ingram,et al. Two DNA methyltransferases from murine erythroleukemia cells: purification, sequence specificity, and mode of interaction with DNA. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[147] A. Razin,et al. Substrate and sequence specificity of a eukaryotic DNA methylase , 1982, Nature.
[148] C. Allis,et al. Proteolytic processing of histone H3 in chromatin: a physiologically regulated event in tetrahymena micronuclei , 1980, Cell.
[149] R. Smith,et al. Occurrence and distribution of acid-labile histone phosphates in regenerating rat liver. , 1974, Biochemistry.
[150] A. Mirsky,et al. ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS. , 1964, Proceedings of the National Academy of Sciences of the United States of America.
[151] N. Young. The Short and the Long of it , 1955 .