Ribosome profiling and dynamic regulation of translation in mammals.
暂无分享,去创建一个
[1] A. Fire,et al. Wobble base-pairing slows in vivo translation elongation in metazoans. , 2011, RNA.
[2] P. Canoll,et al. Ribosome Profiling Reveals a Cell-Type-Specific Translational Landscape in Brain Tumors , 2014, The Journal of Neuroscience.
[3] Michael P Snyder,et al. High-throughput sequencing for biology and medicine , 2013, Molecular systems biology.
[4] Jeffrey A. Hussmann,et al. Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast , 2015, bioRxiv.
[5] Shu-Bing Qian,et al. Quantitative profiling of initiating ribosomes in vivo , 2014, Nature Methods.
[6] Jon R Lorsch,et al. The mechanism of eukaryotic translation initiation: new insights and challenges. , 2012, Cold Spring Harbor perspectives in biology.
[7] Justin Gardin,et al. Measurement of average decoding rates of the 61 sense codons in vivo , 2014, eLife.
[8] Manfred Lenzen,et al. International trade drives biodiversity threats in developing nations , 2012, Nature.
[9] L. Hurst,et al. Positively Charged Residues Are the Major Determinants of Ribosomal Velocity , 2013, PLoS biology.
[10] P. Bickel,et al. System wide analyses have underestimated protein abundances and the importance of transcription in mammals , 2012, PeerJ.
[11] Reuven Agami,et al. Tumour-specific proline vulnerability uncovered by differential ribosome codon reading , 2016, Nature.
[12] James Taylor,et al. Ribosome A and P sites revealed by length analysis of ribosome profiling data , 2015, Nucleic acids research.
[13] F. Naef,et al. The Circadian Clock Coordinates Ribosome Biogenesis , 2013, PLoS biology.
[14] Daphne Koller,et al. Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation , 2014, Molecular systems biology.
[15] Nicholas T. Ingolia. Ribosome Footprint Profiling of Translation throughout the Genome , 2016, Cell.
[16] B. Viollet,et al. Translational tolerance of mitochondrial genes to metabolic energy stress involves TISU and eIF1-eIF4GI cooperation in start codon selection. , 2015, Cell metabolism.
[17] Konstantinos J. Mavrakis,et al. RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer , 2014, Nature.
[18] M. Bushell,et al. Translational regulation of gene expression during conditions of cell stress. , 2010, Molecular cell.
[19] V. Gladyshev,et al. Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress , 2012, Proceedings of the National Academy of Sciences.
[20] Gene-Wei Li. How do bacteria tune translation efficiency? , 2015, Current opinion in microbiology.
[21] Michaela Frye,et al. Stem cell function and stress response are controlled by protein synthesis , 2016, Nature.
[22] Rachel Green,et al. Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling. , 2016, Cell reports.
[23] J. Weissman,et al. Ribosome profiling reveals the what, when, where and how of protein synthesis , 2015, Nature Reviews Molecular Cell Biology.
[24] D. Sabatini,et al. A unifying model for mTORC1-mediated regulation of mRNA translation , 2012, Nature.
[25] Thomas E. Gorochowski,et al. Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability , 2013, Nucleic acids research.
[26] A. Hinnebusch,et al. Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets , 2009, Cell.
[27] Maxwell R. Mumbach,et al. Dynamic profiling of the protein life cycle in response to pathogens , 2015, Science.
[28] Patrick B. F. O'Connor,et al. Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes , 2015, Genome Biology.
[29] Henrik Molina,et al. Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression , 2016, Cell.
[30] J. Goeman,et al. Assessing the translational landscape of myogenic differentiation by ribosome profiling , 2015, Nucleic acids research.
[31] Patrick B. F. O'Connor,et al. Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression , 2015, eLife.
[32] Qing‐Yu He,et al. Genome-Wide and Experimental Resolution of Relative Translation Elongation Speed at Individual Gene Level in Human Cells , 2016, PLoS genetics.
[33] Vadim N. Gladyshev,et al. Translation inhibitors cause abnormalities in ribosome profiling experiments , 2014, Nucleic acids research.
[34] A. Hinnebusch,et al. Translational control by 5′-untranslated regions of eukaryotic mRNAs , 2016, Science.
[35] J. Pelletier,et al. nanoCAGE reveals 5′ UTR features that define specific modes of translation of functionally related MTOR-sensitive mRNAs , 2016, Genome research.
[36] E. Marcotte,et al. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses , 2012, Nature Reviews Genetics.
[37] Gregory Lefebvre,et al. Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver , 2015, Proceedings of the National Academy of Sciences.
[38] Xuerui Yang,et al. Genome-wide assessment of differential translations with ribosome profiling data , 2016, Nature Communications.
[39] Javier Gallego,et al. Mitotic cell-cycle progression is regulated by CPEB1 and CPEB4-dependent translational control , 2010, Nature Cell Biology.
[40] C. Burge,et al. Widespread regulation of translation by elongation pausing in heat shock , 2013, Molecular cell.
[41] A. Hinnebusch. Translational regulation of GCN4 and the general amino acid control of yeast. , 2005, Annual review of microbiology.
[42] A. Sehgal,et al. Ribosome profiling reveals an important role for translational control in circadian gene expression , 2015, Genome research.
[43] Tamir Tuller,et al. The effect of tRNA levels on decoding times of mRNA codons , 2014, Nucleic acids research.
[44] C. Proud. Control of the translational machinery by amino acids. , 2014, The American journal of clinical nutrition.
[45] V. de Crécy-Lagard,et al. Global translational impacts of the loss of the tRNA modification t6A in yeast , 2015, Microbial cell.
[46] T. C. White,et al. The evolution of drug resistance in clinical isolates of Candida albicans , 2015, eLife.
[47] Nicholas T. Ingolia,et al. The translational landscape of mTOR signalling steers cancer initiation and metastasis , 2012, Nature.
[48] R. Palmiter,et al. Cell-type-specific isolation of ribosome-associated mRNA from complex tissues , 2009, Proceedings of the National Academy of Sciences.
[49] J. Derisi,et al. Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation , 2014, Genome Biology.
[50] Pavel V. Baranov,et al. Comparative survey of the relative impact of mRNA features on local ribosome profiling read density , 2015, Nature Communications.
[51] Bin Wu,et al. Translation dynamics of single mRNAs in live cells and neurons , 2016, Science.
[52] Hiromi W L Koh,et al. Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress , 2015, bioRxiv.
[53] Hyeshik Chang,et al. Regulation of Poly(A) Tail and Translation during the Somatic Cell Cycle. , 2016, Molecular cell.
[54] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[55] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[56] Reuven Agami,et al. Ribosome profiling reveals features of normal and disease-associated mitochondrial translation , 2013, Nature Communications.
[57] D. Gatfield,et al. Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames , 2015, Genome research.
[58] Gunnar Rätsch,et al. RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints , 2015, bioRxiv.
[59] Jian-Rong Yang,et al. Codon-by-Codon Modulation of Translational Speed and Accuracy Via mRNA Folding , 2014, PLoS biology.
[60] Adam B. Olshen,et al. The translational landscape of the mammalian cell cycle. , 2013, Molecular cell.
[61] Shu-Bing Qian,et al. Cotranslational response to proteotoxic stress by elongation pausing of ribosomes. , 2013, Molecular cell.
[62] N. Sonenberg,et al. Mechanisms governing the control of mRNA translation , 2010, Physical biology.
[63] N. Sonenberg,et al. Unique translation initiation of mRNAs-containing TISU element , 2011, Nucleic acids research.
[64] J. Weissman,et al. Regulation of mRNA translation during mitosis , 2015, eLife.
[65] Nathan Morris,et al. Codon Optimality Is a Major Determinant of mRNA Stability , 2015, Cell.
[66] Thomas E. Gorochowski,et al. Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate , 2015, Nucleic acids research.
[67] C. Proud,et al. mTORC1 signaling controls multiple steps in ribosome biogenesis. , 2014, Seminars in cell & developmental biology.
[68] M. Selbach,et al. Global quantification of mammalian gene expression control , 2011, Nature.
[69] R. Wysocki,et al. Molecular Profiling of Activated Neurons by Phosphorylated Ribosome Capture , 2012, Cell.
[70] Matthew S. Sachs,et al. Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding. , 2015, Molecular cell.
[71] P. Brown,et al. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments , 2014, eLife.