Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis

[1]  S. Mirarab,et al.  Sequence Analysis , 2020, Encyclopedia of Bioinformatics and Computational Biology.

[2]  C. Holt,et al.  Dynamic Axonal Translation in Developing and Mature Visual Circuits , 2016, Cell.

[3]  S. Sumanas,et al.  ETS transcription factors in embryonic vascular development , 2016, Angiogenesis.

[4]  Amber N. Stratman,et al.  Temporal-specific roles of Rac1 during vascular development and retinal angiogenesis. , 2016, Developmental biology.

[5]  A. Cvekl,et al.  Large Maf Transcription Factors: Cousins of AP-1 Proteins and Important Regulators of Cellular Differentiation. , 2016, The Einstein journal of biology and medicine : EJBM.

[6]  Alan R. Mardinly,et al.  Sensory experience regulates cortical inhibition by inducing IGF-1 in VIP neurons , 2016, Nature.

[7]  P. Carmeliet,et al.  FOXO1 couples metabolic activity and growth state in the vascular endothelium , 2015, Nature.

[8]  Jay W. Shin,et al.  DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium. , 2015, Cell reports.

[9]  Ke-shu Xu,et al.  Cdc42 is required for cytoskeletal support of endothelial cell adhesion during blood vessel formation in mice , 2015, Development.

[10]  R. Taft,et al.  mafba is a downstream transcriptional effector of Vegfc signaling essential for embryonic lymphangiogenesis in zebrafish , 2015, Genes & development.

[11]  M. Schwab,et al.  Wiring the Vascular Network with Neural Cues: A CNS Perspective , 2015, Neuron.

[12]  H. Augustin,et al.  Mechanisms of Vessel Pruning and Regression. , 2015, Developmental cell.

[13]  M. Kretz,et al.  A LncRNA-MAF:MAFB transcription factor network regulates epidermal differentiation. , 2015, Developmental cell.

[14]  M. Matsuda,et al.  Cdc42 mediates Bmp-induced sprouting angiogenesis through Fmnl3-driven assembly of endothelial filopodia in zebrafish. , 2015, Developmental cell.

[15]  Yixing Han,et al.  Advanced Applications of RNA Sequencing and Challenges , 2015, Bioinformatics and biology insights.

[16]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[17]  A. Loewenstein,et al.  Gene profiling of human VEGF signaling pathways in human endothelial and retinal pigment epithelial cells after anti VEGF treatment , 2014, BMC Research Notes.

[18]  Paul Theodor Pyl,et al.  HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.

[19]  Ana Conesa,et al.  Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series , 2014, Bioinform..

[20]  Piotr J. Balwierz,et al.  ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs , 2014, Genome research.

[21]  S. Gerber,et al.  G-Protein–Coupled Receptor-2–Interacting Protein-1 Is Required for Endothelial Cell Directional Migration and Tumor Angiogenesis via Cortactin-Dependent Lamellipodia Formation , 2014, Arteriosclerosis, thrombosis, and vascular biology.

[22]  D. Kent.  Age-related macular degeneration: Beyond anti-angiogenesis , 2014, Molecular vision.

[23]  P. Carmeliet,et al.  Role of endothelial cell metabolism in vessel sprouting. , 2013, Cell metabolism.

[24]  J. R. Holt,et al.  A Gata3–Mafb transcriptional network directs post-synaptic differentiation in synapses specialized for hearing , 2013, eLife.

[25]  R. Adams,et al.  Notch controls retinal blood vessel maturation and quiescence , 2013, Development.

[26]  A. Malik,et al.  Transcriptional regulation of endothelial cell and vascular development. , 2013, Circulation research.

[27]  I. Amit,et al.  High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states , 2013, Nature Protocols.

[28]  I. Simon,et al.  Studying and modelling dynamic biological processes using time-series gene expression data , 2012, Nature Reviews Genetics.

[29]  Chien-hung Chen,et al.  Rictor regulates cell migration by suppressing RhoGDI2 , 2012, Oncogene.

[30]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[31]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[32]  D. Cheresh,et al.  Tumor angiogenesis: molecular pathways and therapeutic targets , 2011, Nature Medicine.

[33]  Holger Gerhardt,et al.  Basic and Therapeutic Aspects of Angiogenesis , 2011, Cell.

[34]  R. Stein,et al.  MafA and MafB activity in pancreatic β cells , 2011, Trends in Endocrinology & Metabolism.

[35]  Didier Y. R. Stainier,et al.  Molecular control of endothelial cell behaviour during blood vessel morphogenesis , 2011, Nature Reviews Molecular Cell Biology.

[36]  P. Carmeliet,et al.  Molecular mechanisms and clinical applications of angiogenesis , 2011, Nature.

[37]  R. Adams,et al.  Dynamics of endothelial cell behavior in sprouting angiogenesis. , 2010, Current opinion in cell biology.

[38]  R. Adams,et al.  Inducible gene targeting in the neonatal vasculature and analysis of retinal angiogenesis in mice , 2010, Nature Protocols.

[39]  Jing Chen,et al.  The mouse retina as an angiogenesis model. , 2010, Investigative ophthalmology & visual science.

[40]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[41]  Cory Y. McLean,et al.  GREAT improves functional interpretation of cis-regulatory regions , 2010, Nature Biotechnology.

[42]  N. Dryden,et al.  Regulation of angiogenesis by ETS transcription factors. , 2009, Biochemical Society transactions.

[43]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[44]  R. Palmiter,et al.  Cell-type-specific isolation of ribosome-associated mRNA from complex tissues , 2009, Proceedings of the National Academy of Sciences.

[45]  L. Fiedler.  Rac1 regulates cardiovascular development and postnatal function of endothelium , 2009, Cell adhesion & migration.

[46]  M. Massett,et al.  G-Protein–Coupled Receptor Kinase Interacting Protein-1 Is Required for Pulmonary Vascular Development , 2009, Circulation.

[47]  A. Visel,et al.  Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors , 2008, Cell.

[48]  P. Chambon,et al.  Efficient, inducible Cre‐recombinase activation in vascular endothelium , 2008, Genesis.

[49]  S. Seaman,et al.  Genes that distinguish physiological and pathological angiogenesis. , 2007, Cancer cell.

[50]  J. Davis,et al.  Optimized fibrin gel bead assay for the study of angiogenesis. , 2007, Journal of visualized experiments : JoVE.

[51]  I. Artner,et al.  MafB is required for islet β cell maturation , 2007, Proceedings of the National Academy of Sciences.

[52]  Marcus Fruttiger,et al.  Development of the retinal vasculature , 2007, Angiogenesis.

[53]  K. Moulton.  Angiogenesis in atherosclerosis: gathering evidence beyond speculation , 2006, Current opinion in lipidology.

[54]  J. D. Engel,et al.  MafB Is Essential for Renal Development and F4/80 Expression in Macrophages , 2006, Molecular and Cellular Biology.

[55]  M. Neeman,et al.  Pathological angiogenesis is induced by sustained Akt signaling and inhibited by rapamycin. , 2006, Cancer cell.

[56]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[57]  J. Gamble,et al.  Expression profiling reveals functionally important genes and coordinately regulated signaling pathway genes during in vitro angiogenesis. , 2005, Physiological genomics.

[58]  Fu-Jung Lin,et al.  Suppression of Notch signalling by the COUP-TFII transcription factor regulates vein identity , 2005, Nature.

[59]  T. Graf,et al.  MafB deficiency causes defective respiratory rhythmogenesis and fatal central apnea at birth , 2003, Nature Neuroscience.

[60]  Franklin Peale,et al.  In silico data filtering to identify new angiogenesis targets from a large in vitro gene profiling data set. , 2002, Physiological genomics.

[61]  F. Peale,et al.  Gene expression profiling in an in vitro model of angiogenesis. , 2000, The American journal of pathology.

[62]  T. Graf,et al.  MafB is an inducer of monocytic differentiation , 2000, The EMBO journal.

[63]  C. Pilarsky,et al.  Differential gene expression by endothelial cells in distinct angiogenic states. , 2000, European journal of biochemistry.

[64]  M. Tsai,et al.  The orphan nuclear receptor COUP-TFII is required for angiogenesis and heart development. , 1999, Genes & development.

[65]  N. Andrews,et al.  The Maf transcription factors: regulators of differentiation. , 1997, Trends in biochemical sciences.

[66]  T. Graf,et al.  MafB Is an Interaction Partner and Repressor of Ets-1 That Inhibits Erythroid Differentiation , 1996, Cell.

[67]  B. Tian,et al.  RNA‐Seq methods for transcriptome analysis , 2017, Wiley interdisciplinary reviews. RNA.

[68]  P. Greengard,et al.  Resource Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types , 2009 .

[69]  P. Gilardi-Hebenstreit,et al.  Novel activities of Mafb underlie its dual role in hindbrain segmentation and regional specification. , 2003, Developmental biology.

[70]  D. Taverna,et al.  Enhanced pathological angiogenesis in mice lacking beta3 integrin or beta3 and beta5 integrins. , 2002, Nature medicine.

[71]  Ben-Yang Liao,et al.  Bioinformatics Applications Note Databases and Ontologies Mamphea: a Web Tool for Mammalian Phenotype Enrichment Analysis , 2022 .