Single-step multivalent capture assay for nucleic acid detection with dual-affinity regulation using mutation inhibition and allosteric activation† †Electronic supplementary information (ESI) available: Experimental procedures, table of detailed DNA sequences and supporting figures. See DOI: 10.1039

A single-step electrocatalytic biosensor with dual-affinity regulation enables a tunable dynamic range and tunable single nucleotide resolution for nucleic acid detection.

[1]  A. Litonjua,et al.  Lower perinatal exposure to Proteobacteria is an independent predictor of early childhood wheezing. , 2019, The Journal of allergy and clinical immunology.

[2]  Kemin Wang,et al.  A DNA nanowire based localized catalytic hairpin assembly reaction for microRNA imaging in live cells† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc02943a , 2018, Chemical science.

[3]  H. Shao,et al.  Visual and modular detection of pathogen nucleic acids with enzyme–DNA molecular complexes , 2018, Nature Communications.

[4]  R. Chiu,et al.  Sequencing of Circulating Cell‐free DNA during Pregnancy , 2018, The New England journal of medicine.

[5]  N. Girard,et al.  Clinical potential of circulating tumour DNA in patients receiving anticancer immunotherapy , 2018, Nature Reviews Clinical Oncology.

[6]  Xiaojun Ren,et al.  Amplified Tandem Spinach-Based Aptamer Transcription Enables Low Background miRNA Detection. , 2018, Analytical chemistry.

[7]  Jianlin Shi,et al.  Fe–Au Nanoparticle‐Coupling for Ultrasensitive Detections of Circulating Tumor DNA , 2018, Advanced materials.

[8]  Xingyu Jiang,et al.  Controllable Assembly of Enzymes for Multiplexed Lab-on-a-Chip Bioassays with a Tunable Detection Range. , 2018, Angewandte Chemie.

[9]  Juwen Shen,et al.  Valency-Controlled Framework Nucleic Acid Signal Amplifiers. , 2018, Angewandte Chemie.

[10]  P. Jiang,et al.  Sequencing-based counting and size profiling of plasma Epstein–Barr virus DNA enhance population screening of nasopharyngeal carcinoma , 2018, Proceedings of the National Academy of Sciences.

[11]  Chun-yang Zhang,et al.  Integration of isothermal amplification with quantum dot-based fluorescence resonance energy transfer for simultaneous detection of multiple microRNAs† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc00832a , 2018, Chemical science.

[12]  J. Lei,et al.  Sensitive detection of intracellular microRNA based on a flowerlike vector with catalytic hairpin assembly. , 2018, Chemical communications.

[13]  Kemin Wang,et al.  Live‐Cell MicroRNA Imaging through MnO2 Nanosheet‐Mediated DD‐A Hybridization Chain Reaction , 2018, Chembiochem : a European journal of chemical biology.

[14]  Bang-Ce Ye,et al.  Rational Engineering of a Dynamic, Entropy-Driven DNA Nanomachine for Intracellular MicroRNA Imaging. , 2017, Angewandte Chemie.

[15]  Sai Bi,et al.  Hybridization chain reaction: a versatile molecular tool for biosensing, bioimaging, and biomedicine. , 2017, Chemical Society reviews.

[16]  Wei Jiang,et al.  Sensitive detection of T4 polynucleotide kinase activity based on multifunctional magnetic probes and polymerization nicking reactions mediated hyperbranched rolling circle amplification. , 2017, Biosensors & bioelectronics.

[17]  Kaixiang Zhang,et al.  Isothermal Amplification for MicroRNA Detection: From the Test Tube to the Cell. , 2017, Accounts of chemical research.

[18]  Xiaojun Ren,et al.  Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplification† †Electronic supplementary information (ESI) available: Additional experimental materials, methods, DNA sequences and supplementary figures and tables. See DOI: 10.1039/c7sc00292k Click here for addi , 2017, Chemical science.

[19]  Shana O Kelley,et al.  DNA Clutch Probes for Circulating Tumor DNA Analysis. , 2016, Journal of the American Chemical Society.

[20]  Kemin Wang,et al.  Powerful Amplification Cascades of FRET-Based Two-Layer Nonenzymatic Nucleic Acid Circuits. , 2016, Analytical chemistry.

[21]  Ash A. Alizadeh,et al.  Integrated digital error suppression for improved detection of circulating tumor DNA , 2016, Nature Biotechnology.

[22]  Kemin Wang,et al.  Fluorescence resonance energy transfer-based hybridization chain reaction for in situ visualization of tumor-related mRNA† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c6sc00377j , 2016, Chemical science.

[23]  Yifan Lv,et al.  Entropy Beacon: A Hairpin-Free DNA Amplification Strategy for Efficient Detection of Nucleic Acids , 2015, Analytical chemistry.

[24]  A. Ellington,et al.  A stochastic DNA walker that traverses a microparticle surface , 2015, Nature nanotechnology.

[25]  Shana O Kelley,et al.  An electrochemical clamp assay for direct, rapid analysis of circulating nucleic acids in serum. , 2015, Nature chemistry.

[26]  Zhan Wu,et al.  Electrostatic nucleic acid nanoassembly enables hybridization chain reaction in living cells for ultrasensitive mRNA imaging. , 2015, Journal of the American Chemical Society.

[27]  Xiang Zhou,et al.  A DNA logic gate based on strand displacement reaction and rolling circle amplification, responding to multiple low-abundance DNA fragment input signals, and its application in detecting miRNAs. , 2015, Chemical communications.

[28]  Cuichen Wu,et al.  A Nonenzymatic Hairpin DNA Cascade Reaction Provides High Signal Gain of mRNA Imaging inside Live Cells , 2015, Journal of the American Chemical Society.

[29]  Anna J Simon,et al.  Intrinsic disorder as a generalizable strategy for the rational design of highly responsive, allosterically cooperative receptors , 2014, Proceedings of the National Academy of Sciences.

[30]  M. Berger,et al.  Capturing intra-tumor genetic heterogeneity by de novo mutation profiling of circulating cell-free tumor DNA: a proof-of-principle. , 2014, Annals of oncology : official journal of the European Society for Medical Oncology.

[31]  Yuehe Lin,et al.  In situ simultaneous monitoring of ATP and GTP using a graphene oxide nanosheet–based sensing platform in living cells , 2014, Nature Protocols.

[32]  Jie Chao,et al.  Multivalent capture and detection of cancer cells with DNA nanostructured biosensors and multibranched hybridization chain reaction amplification. , 2014, Analytical chemistry.

[33]  Niles A. Pierce,et al.  Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability , 2014, ACS nano.

[34]  Jiye Shi,et al.  Hybridization chain reaction amplification of microRNA detection with a tetrahedral DNA nanostructure-based electrochemical biosensor. , 2014, Analytical chemistry.

[35]  Kemin Wang,et al.  Enzyme-free colorimetric detection of DNA by using gold nanoparticles and hybridization chain reaction amplification. , 2013, Analytical chemistry.

[36]  Carlos Caldas,et al.  Analysis of circulating tumor DNA to monitor metastatic breast cancer. , 2013, The New England journal of medicine.

[37]  A. Vallée-Bélisle,et al.  Using distal-site mutations and allosteric inhibition to tune, extend, and narrow the useful dynamic range of aptamer-based sensors. , 2012, Journal of the American Chemical Society.

[38]  F. Ricci,et al.  Rational design of allosteric inhibitors and activators using the population-shift model: in vitro validation and application to an artificial biosensor. , 2012, Journal of the American Chemical Society.

[39]  Weian Zhao,et al.  Colorimetric and ultrasensitive bioassay based on a dual-amplification system using aptamer and DNAzyme. , 2012, Analytical chemistry.

[40]  James O. Wrabl,et al.  Structural and energetic basis of allostery. , 2012, Annual review of biophysics.

[41]  Kevin W Plaxco,et al.  Engineering biosensors with extended, narrowed, or arbitrarily edited dynamic range. , 2012, Journal of the American Chemical Society.

[42]  Itamar Willner,et al.  Amplified analysis of DNA by the autonomous assembly of polymers consisting of DNAzyme wires. , 2011, Journal of the American Chemical Society.

[43]  Michael Famulok,et al.  Aptamers for allosteric regulation. , 2011, Nature chemical biology.

[44]  Kemin Wang,et al.  Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids. , 2011, Angewandte Chemie.

[45]  Christopher Pöhlmann,et al.  Electrochemical detection of microRNAs via gap hybridization assay. , 2010, Analytical chemistry.

[46]  Yi Lu,et al.  Abasic site-containing DNAzyme and aptamer for label-free fluorescent detection of Pb(2+) and adenosine with high sensitivity, selectivity, and tunable dynamic range. , 2009, Journal of the American Chemical Society.

[47]  S. Silverman,et al.  Deoxyribozymes: selection design and serendipity in the development of DNA catalysts. , 2009, Accounts of chemical research.

[48]  R. Nussinov,et al.  The origin of allosteric functional modulation: multiple pre-existing pathways. , 2009, Structure.

[49]  R. Nussinov,et al.  Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms , 2009, Molecular bioSystems.

[50]  D. Y. Zhang,et al.  Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA , 2007, Science.

[51]  Robert M. Dirks,et al.  Triggered amplification by hybridization chain reaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[52]  H W Hellinga,et al.  The rational design of allosteric interactions in a monomeric protein and its applications to the construction of biosensors. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[53]  Chi-Ying F. Huang,et al.  Ultrasensitivity in the mitogen-activated protein kinase cascade. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[54]  S. Benner Enzyme kinetics and molecular evolution , 1989 .