Acetyl-coenzyme A carboxylase: crucial metabolic enzyme and attractive target for drug discovery

Abstract.Acetyl-coenzyme A carboxylases (ACCs) have crucial roles in fatty acid metabolism in most living organisms. Mice deficient in ACC2 have continuous fatty acid oxidation and reduced body fat and body weight, validating this enzyme as a target for drug development against obesity, diabetes and other symptoms of the metabolic syndrome. ACC is a biotin-dependent enzyme and catalyzes the carboxylation of acetyl-CoA to produce malonyl-CoA through its two catalytic activities, biotin carboxylase (BC) and carboxyltransferase (CT). ACC is a multi-subunit enzyme in most prokaryotes, whereas it is a large, multi-domain enzyme in most eukaryotes. The activity of the enzyme can be controlled at the transcriptional level as well as by small molecule modulators and covalent modification. This review will summarize the structural information that is now available for both the BC and CT enzymes, as well as the molecular mechanism of action of potent ACC inhibitors. The current intense research on these enzymes could lead to the development of novel therapies against metabolic syndrome and other diseases.

[1]  J. Moss,et al.  Acetyl coenzyme A carboxylase system of Escherichia coli. Purification and properties of the biotin carboxylase, carboxyltransferase, and carboxyl carrier protein components. , 1974, The Journal of biological chemistry.

[2]  M. Lane,et al.  Kinetics of activation of acetyl-CoA carboxylase by citrate. Relationship to the rate of polymerization of the enzyme. , 1983, The Journal of biological chemistry.

[3]  S. Wakil,et al.  Activation of acetyl-CoA carboxylase. Purification and properties of a Mn2+-dependent phosphatase. , 1985, The Journal of biological chemistry.

[4]  J. Knowles The mechanism of biotin-dependent enzymes. , 1989, Annual review of biochemistry.

[5]  J. W. Gronwald Lipid Biosynthesis Inhibitors , 1991, Weed Science.

[6]  J. Casida,et al.  Coenzyme A esters of 2-aryloxyphenoxypropionate herbicides and 2-arylpropionate antiinflammatory drugs are potent and stereoselective inhibitors of rat liver acetyl-CoA carboxylase. , 1992, Life sciences.

[7]  H Irschik,et al.  The soraphens: a family of novel antifungal compounds from Sorangium cellulosum (Myxobacteria). I. Soraphen A1 alpha: fermentation, isolation, biological properties. , 1994, The Journal of antibiotics.

[8]  H M Holden,et al.  Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase. , 1994, Biochemistry.

[9]  M. Hixon,et al.  Inhibition of acetyl-coenzyme a carboxylase by coenzyme a conjugates of grass-selective herbicides , 1995 .

[10]  W. Hendrickson,et al.  Structure of the biotinyl domain of acetyl-coenzyme A carboxylase determined by MAD phasing. , 1995, Structure.

[11]  P. Willett,et al.  Biotin carboxylase comes into the fold , 1996, Nature Structural Biology.

[12]  Tey Kk Regulation of fatty acid synthesis in the lactating rat mammary gland. , 1996 .

[13]  Michael Y. Galperin,et al.  A diverse superfamily of enzymes with ATP‐dependent carboxylate—amine/thiol ligase activity , 1997, Protein science : a publication of the Protein Society.

[14]  J. McGarry,et al.  The mitochondrial carnitine palmitoyltransferase system. From concept to molecular analysis. , 1997, European journal of biochemistry.

[15]  E. Richard,et al.  Overview of mutations in the PCCA and PCCB genes causing propionic acidemia , 1999, Human mutation.

[16]  K. Cocker,et al.  Multiple Mechanisms of Resistance to Fenoxaprop-P-Ethyl in United Kingdom and Other European Populations of Herbicide-Resistant Alopecurus myosuroides (Black-Grass) , 1999 .

[17]  D. Job,et al.  BIOTIN METABOLISM IN PLANTS. , 2003, Annual review of plant physiology and plant molecular biology.

[18]  S. Chirala,et al.  The subcellular localization of acetyl-CoA carboxylase 2. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[19]  M. Devine,et al.  Altered target sites as a mechanism of herbicide resistance , 2000 .

[20]  H M Holden,et al.  Movement of the Biotin Carboxylase B-domain as a Result of ATP Binding* , 2000, The Journal of Biological Chemistry.

[21]  R. Haselkorn,et al.  An isoleucine/leucine residue in the carboxyltransferase domain of acetyl-CoA carboxylase is critical for interaction with aryloxyphenoxypropionate and cyclohexanedione inhibitors , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[22]  R J Heath,et al.  Lipid biosynthesis as a target for antibacterial agents. , 2001, Progress in lipid research.

[23]  F. R. van der Leij,et al.  Molecular enzymology of carnitine transfer and transport. , 2001, Biochimica et biophysica acta.

[24]  H M Holden,et al.  The crotonase superfamily: divergently related enzymes that catalyze different reactions involving acyl coenzyme a thioesters. , 2001, Accounts of chemical research.

[25]  J. W. Campbell,et al.  Bacterial fatty acid biosynthesis: targets for antibacterial drug discovery. , 2001, Annual review of microbiology.

[26]  Martin M. Matzuk,et al.  Continuous Fatty Acid Oxidation and Reduced Fat Storage in Mice Lacking Acetyl-CoA Carboxylase 2 , 2001, Science.

[27]  R. S. Solórzano-Vargas,et al.  Biotin in metabolism and its relationship to human disease. , 2002, Archives of medical research.

[28]  R. Haselkorn,et al.  The Carboxyltransferase Activity of the Apicoplast Acetyl-CoA Carboxylase of Toxoplasma gondii Is the Target of Aryloxyphenoxypropionate Inhibitors* , 2002, The Journal of Biological Chemistry.

[29]  D. Hardie,et al.  Regulation of fatty acid synthesis and oxidation by the AMP-activated protein kinase. , 2001, Biochemical Society transactions.

[30]  M. Munday Regulation of mammalian acetyl-CoA carboxylase. , 2002, Biochemical Society transactions.

[31]  N. Price,et al.  Localization of messenger RNAs encoding enzymes associated with malonyl-CoA metabolism in mouse brain. , 2002, Brain research. Gene expression patterns.

[32]  F. Foufelle,et al.  New perspectives in the regulation of hepatic glycolytic and lipogenic genes by insulin and glucose: a role for the transcription factor sterol regulatory element binding protein-1c. , 2002, The Biochemical journal.

[33]  F. Field,et al.  Polyunsaturated fatty acids decrease the expression of sterol regulatory element-binding protein-1 in CaCo-2 cells: effect on fatty acid synthesis and triacylglycerol transport. , 2002, The Biochemical journal.

[34]  A. Chapman-Smith,et al.  Stabilization of the Biotinoyl Domain of Escherichia coli Acetyl-CoA Carboxylase by Interactions between the Attached Biotin and the Protruding “Thumb” Structure* , 2002, The Journal of Biological Chemistry.

[35]  J. Lenhard,et al.  Preclinical developments in type 2 diabetes. , 2002, Advanced drug delivery reviews.

[36]  H. Seyfert,et al.  Promoter II of the bovine acetyl-coenzyme A carboxylase-alpha-encoding gene is widely expressed and strongly active in different cells. , 2002, Biochimica et biophysica acta.

[37]  W. Winder,et al.  Phosphorylation-activity relationships of AMPK and acetyl-CoA carboxylase in muscle. , 2002, Journal of applied physiology.

[38]  J. Cronan Interchangeable Enzyme Modules , 2002, The Journal of Biological Chemistry.

[39]  C. Délye,et al.  SNP markers for black-grass (Alopecurus myosuroides Huds.) genotypes resistant to acetyl CoA-carboxylase inhibiting herbicides , 2002, Theoretical and Applied Genetics.

[40]  C. Khosla,et al.  Kinetic and Structural Analysis of a New Group of Acyl-CoA Carboxylases Found in Streptomyces coelicolor A3(2)* , 2002, The Journal of Biological Chemistry.

[41]  Grover L Waldrop,et al.  A Biotin Analog Inhibits Acetyl-CoA Carboxylase Activity and Adipogenesis* , 2002, The Journal of Biological Chemistry.

[42]  Grover L Waldrop,et al.  Multi-subunit acetyl-CoA carboxylases. , 2002, Progress in lipid research.

[43]  J. Friedman,et al.  The function of leptin in nutrition, weight, and physiology. , 2002, Nutrition reviews.

[44]  M. J. Christoffers,et al.  An isoleucine to leucine mutation in acetyl-CoA carboxylase confers herbicide resistance in wild oat. , 2002, Genome.

[45]  D. Pernich,et al.  Origin of enantiomeric selectivity in the aryloxyphenoxypropionic acid class of herbicidal acetyl coenzyme A carboxylase (ACCase) inhibitors. , 2002, Journal of agricultural and food chemistry.

[46]  R. Ledeen,et al.  Fatty acid synthesizing enzymes intrinsic to myelin. , 2003, Brain research. Molecular brain research.

[47]  Sahng-Wook Park,et al.  Acetyl-CoA Carboxylase β Gene Is Regulated by Sterol Regulatory Element-binding Protein-1 in Liver* , 2003, Journal of Biological Chemistry.

[48]  T. Seng,et al.  Cyclohexanedione herbicides are inhibitors of rat heart acetyl-CoA carboxylase. , 2003, Bioorganic & medicinal chemistry letters.

[49]  R. Haselkorn,et al.  Expression of Cytosolic and Plastid Acetyl-Coenzyme A Carboxylase Genes in Young Wheat Plants1,212 , 2003, Plant Physiology.

[50]  D J Campbell,et al.  AMP-activated protein kinase, super metabolic regulator. , 2001, Biochemical Society transactions.

[51]  N. Price,et al.  Characterisation of an N-terminal variant of acetyl-CoA carboxylase-alpha: expression in human tissues and evolutionary aspects. , 2003, Biochimica et biophysica acta.

[52]  B. Viollet,et al.  Physiological role of AMP-activated protein kinase (AMPK): insights from knockout mouse models. , 2001, Biochemical Society transactions.

[53]  J. Friedman A War on Obesity, Not the Obese , 2003, Science.

[54]  S. Wakil,et al.  Acetyl-CoA carboxylase 2 mutant mice are protected against obesity and diabetes induced by high-fat/high-carbohydrate diets , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[55]  A. Millar,et al.  Towards an Analysis of the Rice Mitochondrial Proteome1 , 2003, Plant Physiology.

[56]  J. Harwood,et al.  Graminicide insensitivity correlates with herbicide-binding co-operativity on acetyl-CoA carboxylase isoforms. , 2003, The Biochemical journal.

[57]  P. Carey,et al.  Transcarboxylase 12S crystal structure: hexamer assembly and substrate binding to a multienzyme core , 2003, The EMBO journal.

[58]  Eve Syrkin Wurtele,et al.  Plant biotin-containing carboxylases. , 2003, Archives of biochemistry and biophysics.

[59]  S. Powles,et al.  An Isoleucine Residue within the Carboxyl-Transferase Domain of Multidomain Acetyl-Coenzyme A Carboxylase Is a Major Determinant of Sensitivity to Aryloxyphenoxypropionate But Not to Cyclohexanedione Inhibitors1 , 2003, Plant Physiology.

[60]  S. Binder,et al.  Fatty Acid Biosynthesis in Mitochondria of Grasses: Malonyl-Coenzyme A Is Generated by a MitochondrialLocalized Acetyl-Coenzyme A Carboxylase1 , 2003, Plant Physiology.

[61]  M. Prentki,et al.  AMPK as a metabolic switch in rat muscle, liver and adipose tissue after exercise. , 2003, Acta physiologica Scandinavica.

[62]  S. Wakil,et al.  A Saccharomyces cerevisiae mutant strain defective in acetyl-CoA carboxylase arrests at the G2/M phase of the cell cycle , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[63]  J. Wallace,et al.  The biotin enzyme family: conserved structural motifs and domain rearrangements. , 2003, Current protein & peptide science.

[64]  S. Baud,et al.  Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis. , 2003, The Plant journal : for cell and molecular biology.

[65]  J. Rumberger,et al.  Role of Hexosamine Biosynthesis in Glucose-mediated Up-regulation of Lipogenic Enzyme mRNA Levels , 2003, Journal of Biological Chemistry.

[66]  Robert Huber,et al.  Crystal structure of the carboxyltransferase subunit of the bacterial sodium ion pump glutaconyl‐coenzyme A decarboxylase , 2003, The EMBO journal.

[67]  Liang Tong,et al.  Crystal Structure of the Carboxyltransferase Domain of Acetyl-Coenzyme A Carboxylase , 2003, Science.

[68]  P. Gornicki Apicoplast fatty acid biosynthesis as a target for medical intervention in apicomplexan parasites. , 2003, International journal for parasitology.

[69]  M. Kiniwa,et al.  Anti-hyperlipidemic action of a newly synthesized benzoic acid derivative, S-2E. , 2003, European journal of pharmacology.

[70]  L. Witters,et al.  Acetyl-CoA carboxylase and SREBP expression during peripheral nervous system myelination. , 2003, Biochimica et biophysica acta.

[71]  R. Müller,et al.  Myxobacteria: proficient producers of novel natural products with various biological activities--past and future biotechnological aspects with the focus on the genus Sorangium. , 2003, Journal of biotechnology.

[72]  S. Chirala,et al.  Human acetyl-CoA carboxylase 1 gene: Presence of three promoters and heterogeneity at the 5′-untranslated mRNA region , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[73]  D. Hargrove,et al.  Isozyme-nonselective N-Substituted Bipiperidylcarboxamide Acetyl-CoA Carboxylase Inhibitors Reduce Tissue Malonyl-CoA Concentrations, Inhibit Fatty Acid Synthesis, and Increase Fatty Acid Oxidation in Cultured Cells and in Experimental Animals* , 2003, Journal of Biological Chemistry.

[74]  B. Spiegelman Peroxisome Proliferator-Activated Receptor-Coactivator 1 ( PGC-1 ) : Transcriptional Coactivator and Metabolic Regulator , 2003 .

[75]  L. Field,et al.  Characterisation of target-site resistance to ACCase-inhibiting herbicides in the weed Alopecurus myosuroides (black-grass). , 2003, Pest management science.

[76]  J. Cronan,et al.  The Biotin Carboxylase-Biotin Carboxyl Carrier Protein Complex of Escherichia coli Acetyl-CoA Carboxylase* , 2003, Journal of Biological Chemistry.

[77]  Liang Tong,et al.  A mechanism for the potent inhibition of eukaryotic acetyl-coenzyme A carboxylase by soraphen A, a macrocyclic polyketide natural product. , 2004, Molecular cell.

[78]  J. Cronan,et al.  Expression of Two Escherichia coli Acetyl-CoA Carboxylase Subunits Is Autoregulated* , 2004, Journal of Biological Chemistry.

[79]  Liang Tong,et al.  Molecular basis for the inhibition of the carboxyltransferase domain of acetyl-coenzyme-A carboxylase by haloxyfop and diclofop. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[80]  M. Miyazaki,et al.  Regulation of stearoyl-CoA desaturases and role in metabolism. , 2004, Progress in lipid research.

[81]  R. Haselkorn,et al.  Complex nested promoters control tissue-specific expression of acetyl-CoA carboxylase genes in wheat. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[82]  R. Paschke,et al.  Adiponectin, obesity, and cardiovascular disease. , 2004, Biochimie.

[83]  C. Délye,et al.  Multiple origins for black-grass (Alopecurus myosuroides Huds) target-site-based resistance to herbicides inhibiting acetyl-CoA carboxylase. , 2004, Pest management science.

[84]  D. W. Foster The Role of the Carnitine System in Human Metabolism , 2004, Annals of the New York Academy of Sciences.

[85]  J. Flier Obesity Wars Molecular Progress Confronts an Expanding Epidemic , 2004, Cell.

[86]  K. Hibara,et al.  The GURKE gene encoding an acetyl-CoA carboxylase is required for partitioning the embryo apex into three subregions in Arabidopsis. , 2004, Plant & cell physiology.

[87]  M. Devine,et al.  Use of resistant ACCase mutants to screen for novel inhibitors against resistant and susceptible forms of ACCase from grass weeds. , 2004, Journal of agricultural and food chemistry.

[88]  L. Tong,et al.  Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in complex with CP-640186. , 2004, Structure.

[89]  F. Foufelle,et al.  SREBP transcription factors: master regulators of lipid homeostasis. , 2004, Biochimie.

[90]  C. Khosla,et al.  Crystal structure of the beta-subunit of acyl-CoA carboxylase: structure-based engineering of substrate specificity. , 2004, Biochemistry.

[91]  E. Schweizer,et al.  HFA1 Encoding an Organelle-specific Acetyl-CoA Carboxylase Controls Mitochondrial Fatty Acid Synthesis in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.

[92]  Christopher T Walsh,et al.  Polyketide and Nonribosomal Peptide Antibiotics: Modularity and Versatility , 2004, Science.

[93]  M. Sjölinder,et al.  A new dominant selection marker for transformation of Pichia pastoris to soraphen A resistance. , 2004, Journal of microbiological methods.

[94]  V. Le Corre,et al.  Nucleotide variability at the acetyl coenzyme A carboxylase gene and the signature of herbicide selection in the grass weed Alopecurus myosuroides (Huds.). , 2004, Molecular biology and evolution.

[95]  A. Munnich,et al.  Carnitine palmitoyltransferases 1 and 2: biochemical, molecular and medical aspects. , 2004, Molecular aspects of medicine.

[96]  S. Volrath,et al.  Expression and characterization of recombinant fungal acetyl-CoA carboxylase and isolation of a soraphen-binding domain. , 2004, The Biochemical journal.

[97]  M. Pape,et al.  Effects of a novel dual lipid synthesis inhibitor and its potential utility in treating dyslipidemia and metabolic syndrome Published, JLR Papers in Press, April 21, 2004. DOI 10.1194/jlr.M400018-JLR200 , 2004, Journal of Lipid Research.

[98]  Katsumi Iizuka,et al.  Carbohydrate response element binding protein directly promotes lipogenic enzyme gene transcription. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[99]  H. Lodish,et al.  A family of Acrp30/adiponectin structural and functional paralogs. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[100]  H. J. Harwood Acetyl-CoA carboxylase inhibition for the treatment of metabolic syndrome. , 2004, Current opinion in investigational drugs.

[101]  Y. Sasaki,et al.  Plant Acetyl-CoA Carboxylase: Structure, Biosynthesis, Regulation, and Gene Manipulation for Plant Breeding , 2004, Bioscience, biotechnology, and biochemistry.

[102]  Shin Kondo,et al.  Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution. , 2004, Acta crystallographica. Section D, Biological crystallography.

[103]  J. Friedman,et al.  Stearoyl-CoA desaturase 1 deficiency increases fatty acid oxidation by activating AMP-activated protein kinase in liver. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[104]  Thomas Lampe,et al.  Identification and Characterization of the First Class of Potent Bacterial Acetyl-CoA Carboxylase Inhibitors with Antibacterial Activity* , 2004, Journal of Biological Chemistry.

[105]  S. Clarke,et al.  Fatty Acid Synthesis and its Regulation , 2004 .

[106]  H. Brunengraber,et al.  Regulation of Malonyl-CoA Concentration and Turnover in the Normal Heart* , 2004, Journal of Biological Chemistry.

[107]  M. Gil-Campos,et al.  Adiponectin, the missing link in insulin resistance and obesity. , 2004, Clinical nutrition.

[108]  I. Hwang,et al.  EK-2612, a new cyclohexane-1,3-dione possessing selectivity between rice (Oryza sativa) and barnyardgrass (Echinochloa crus-galli). , 2004, Pest management science.

[109]  S. Baud,et al.  gurke and pasticcino3 mutants affected in embryo development are impaired in acetyl‐CoA carboxylase , 2004, EMBO reports.

[110]  N. Price,et al.  Structure and regulation of acetyl-CoA carboxylase genes of metazoa. , 2005, Biochimica et biophysica acta.

[111]  N. Brunner,et al.  Discovering the Mechanism of Action of Novel Antibacterial Agents through Transcriptional Profiling of Conditional Mutants , 2005, Antimicrobial Agents and Chemotherapy.

[112]  S. Powles,et al.  Molecular Bases for Sensitivity to Acetyl-Coenzyme A Carboxylase Inhibitors in Black-Grass1 , 2005, Plant Physiology.

[113]  W. Winder,et al.  Effect of phosphorylation by AMP-activated protein kinase on palmitoyl-CoA inhibition of skeletal muscle acetyl-CoA carboxylase. , 2005, Journal of applied physiology.

[114]  D. Hardie,et al.  AMP-activated protein kinase: ancient energy gauge provides clues to modern understanding of metabolism. , 2005, Cell metabolism.

[115]  Christoph Handschin,et al.  Hyperlipidemic Effects of Dietary Saturated Fats Mediated through PGC-1β Coactivation of SREBP , 2005, Cell.

[116]  M. Lazar,et al.  How Obesity Causes Diabetes: Not a Tall Tale , 2005, Science.

[117]  G. Reaven Why Syndrome X? From Harold Himsworth to the insulin resistance syndrome. , 2005, Cell metabolism.

[118]  Yong-Ho Ahn,et al.  Alternative Usages of Multiple Promoters of the Acetyl-CoA Carboxylase β Gene Are Related to Differential Transcriptional Regulation in Human and Rodent Tissues* , 2005, Journal of Biological Chemistry.

[119]  T. Lampe,et al.  Pyrrolidinedione Derivatives as Antibacterial Agents with a Novel Mode of Action. , 2005 .

[120]  R. Wilson Parasite plastids: approaching the endgame , 2005, Biological reviews of the Cambridge Philosophical Society.