Single-Cell Virtual Cytometer allows user-friendly and versatile analysis and visualization of multimodal single cell RNAseq datasets

[1]  Chiara Bonini,et al.  T memory stem cells in health and disease , 2017, Nature Medicine.

[2]  Sean C. Bendall,et al.  A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging , 2018, Cell.

[3]  G. Pinkus,et al.  Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity , 2019, Cell.

[4]  Paul Hoffman,et al.  Integrating single-cell transcriptomic data across different conditions, technologies, and species , 2018, Nature Biotechnology.

[5]  F. Jotereau,et al.  Increased frequency of nonconventional double positive CD4CD8 αβ T cells in human breast pleural effusions , 2009, International journal of cancer.

[6]  Justin P Sandoval,et al.  Robust single-cell DNA methylome profiling with snmC-seq2 , 2018, Nature Communications.

[7]  D. Dickel,et al.  Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation , 2018, Nature Neuroscience.

[8]  Lars E. Borm,et al.  Spatial organization of the somatosensory cortex revealed by osmFISH , 2018, Nature Methods.

[9]  William Stafford Noble,et al.  Massively multiplex single-cell Hi-C , 2016, Nature Methods.

[10]  Tiffany J. Chen,et al.  Cytobank: providing an analytics platform for community cytometry data analysis and collaboration. , 2014, Current topics in microbiology and immunology.

[11]  L. Ysebaert,et al.  Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of human TCRVδ1 and TCRVδ2 γδ T lymphocytes , 2019, Proceedings of the National Academy of Sciences.

[12]  Schraga Schwartz,et al.  The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution , 2017, Nature.

[13]  Paul J. Hoffman,et al.  Comprehensive Integration of Single-Cell Data , 2018, Cell.

[14]  M. Tosolini,et al.  Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets , 2019, bioRxiv.

[15]  Shouxiong Huang,et al.  Donor-unrestricted T cells in the human CD1 system , 2016, Immunogenetics.

[16]  Andrew C. Adey,et al.  Joint profiling of chromatin accessibility and gene expression in thousands of single cells , 2018, Science.

[17]  Salil S. Bhate,et al.  Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging , 2017, Cell.

[18]  S. Lotersztajn,et al.  Mucosal-associated invariant T cells and disease , 2019, Nature Reviews Immunology.

[19]  H. Swerdlow,et al.  Large-scale simultaneous measurement of epitopes and transcriptomes in single cells , 2017, Nature Methods.

[20]  Nimrod D. Rubinstein,et al.  Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region , 2018, Science.