Pro ling Non-Coding RNA Levels With Clinical Classi ers in Pediatric Crohn’s Disease

Ranjit S. Pelia Emory University School of Medicine Suresh Venkateswaran Emory University School of Medicine Jason D. Matthews Emory University School of Medicine Yael Haberman University of Cincinnati College of Medicine David J. Cutler Emory University School of Medicine Jeffrey S. Hyams Connecticut Children's Medical Center Lee A. Denson University of Cincinnati College of Medicine Subra Kugathasan (  skugath@emory.edu ) Department of Pediatrics, Emory University School of Medicine and Children's Healthcare of Atlanta https://orcid.org/0000-0002-8686-4189

[1]  E. Loftus,et al.  Use of immune checkpoint inhibitors in patients with pre-established inflammatory bowel diseases: retrospective case series. , 2020, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.

[2]  J. Burisch,et al.  Viewpoint: Inflammatory bowel diseases among immigrants from low- to high-incidence countries: opportunities and considerations. , 2020, Journal of Crohn's & colitis.

[3]  Lingling Zhou,et al.  FAL1: A critical oncogenic long non-coding RNA in human cancers. , 2019, Life sciences.

[4]  S. Massenet.  In vivo assembly of eukaryotic signal recognition particle: A still enigmatic process involving the SMN complex. , 2019, Biochimie.

[5]  Michelle M. Gonzalez,et al.  Deregulation of long intergenic non-coding RNAs in CD4+ T cells of lamina propria in Crohn's disease through transcriptome profiling. , 2019, Journal of Crohn's & colitis.

[6]  M. Silverberg,et al.  Differential miRNA expression in ileal and colonic tissues reveals an altered immunoregulatory molecular profile in individuals with Crohn's disease versus healthy subjects. , 2019, Journal of Crohn's & colitis.

[7]  P. Marsden,et al.  LncRNAs and epigenetic regulation of vascular endothelium: genome positioning system and regulators of chromatin modifiers. , 2019, Current opinion in pharmacology.

[8]  Xing Chen,et al.  Integrating random walk and binary regression to identify novel miRNA-disease association , 2019, BMC Bioinformatics.

[9]  M. Longworth,et al.  Epigenetics, DNA Organization, and Inflammatory Bowel Disease , 2018, Inflammatory bowel diseases.

[10]  A. Barski,et al.  Microbiota-sensitive epigenetic signature predicts inflammation in Crohn's disease. , 2018, JCI insight.

[11]  O. Arrieta,et al.  Correction to: Long non-coding RNAs: implications in targeted diagnoses, prognosis, and improved therapeutic strategies in human non- and triple-negative breast cancer , 2018, Clinical Epigenetics.

[12]  G. Gibson,et al.  Bowel Location Rather Than Disease Subtype Dominates Transcriptomic Heterogeneity in Pediatric IBD , 2018, Cellular and Molecular Gastroenterology and Hepatology.

[13]  G. Santana,et al.  THE ONSET OF CLINICAL MANIFESTATIONS IN INFLAMMATORY BOWEL DISEASE PATIENTS. , 2018, Arquivos de gastroenterologia.

[14]  Jue Zhang,et al.  Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses , 2018, Molecular medicine reports.

[15]  M. Dubinsky,et al.  Changes in Disease Behaviour and Location in Patients With Crohn’s Disease After Seven Years of Follow-Up: A Danish Population-based Inception Cohort , 2018, Journal of Crohn's & colitis.

[16]  Ajay S. Gulati,et al.  Long ncRNA Landscape in the Ileum of Treatment-Naive Early-Onset Crohn Disease. , 2018, Inflammatory bowel diseases.

[17]  Rolf Backofen,et al.  IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions , 2017, Nucleic Acids Res..

[18]  Judy H. Cho,et al.  Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study , 2017, The Lancet.

[19]  I. Sinning,et al.  Structures of human SRP72 complexes provide insights into SRP RNA remodeling and ribosome interaction , 2016, Nucleic acids research.

[20]  A. Jevnikar,et al.  Regulatory non-coding RNA: new instruments in the orchestration of cell death , 2016, Cell Death and Disease.

[21]  Marie-Agnès Dillies,et al.  SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data , 2015, bioRxiv.

[22]  Timothy L. Tickle,et al.  Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. , 2015, Journal of Clinical Investigation.

[23]  A. Loraine,et al.  Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser. , 2015, Methods in molecular biology.

[24]  R. Okamoto,et al.  Role of epithelial cells in the pathogenesis and treatment of inflammatory bowel disease , 2015, Journal of Gastroenterology.

[25]  Timothy L. Tickle,et al.  Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. , 2014, The Journal of clinical investigation.

[26]  Rolf Backofen,et al.  CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains , 2014, Nucleic Acids Res..

[27]  Davis J. McCarthy,et al.  Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation , 2012, Nucleic acids research.

[28]  Genevera I. Allen,et al.  Sparse non-negative generalized PCA with applications to metabolomics , 2011, Bioinform..

[29]  Adele Cutler,et al.  An application of Random Forests to a genome-wide association dataset: Methodological considerations & new findings , 2010, BMC Genetics.

[30]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[31]  Antoine Chaffiol,et al.  Automatic spike train analysis and report generation. An implementation with R, R2HTML and STAR , 2009, Journal of Neuroscience Methods.

[32]  A. Weiner,et al.  Human genes and pseudogenes for the 7SL RNA component of signal recognition particle. , 1984, The EMBO journal.

[33]  G PLACITELLI,et al.  [Ulcerative colitis]. , 1958, La Riforma medica.