Solution Structure and Sugar-Binding Mechanism of Mouse Latrophilin-1 RBL: a 7TM Receptor-Attached Lectin-Like Domain

Summary Latrophilin-1 (Lat-1), a target receptor for α-Latrotoxin, is a putative G protein-coupled receptor implicated in synaptic function. The extracellular portion of Lat-1 contains a rhamnose binding lectin (RBL)-like domain of unknown structure. RBL domains, first isolated from the eggs of marine species, are also found in the ectodomains of other metazoan transmembrane proteins, including a recently discovered coreceptor of the neuronal axon guidance molecule SLT-1/Slit. Here, we describe a structure of this domain from the mouse Lat-1. RBL adopts a unique α/β fold with long structured loops important for monosaccharide recognition, as shown in the structure of a complex with L-rhamnose. Sequence alignments and mutagenesis show that residues important for carbohydrate binding are often absent in other receptor-attached examples of RBL, including the SLT-1/Slit coreceptor. We postulate that this domain class facilitates direct protein-protein interactions in many transmembrane receptors.

[1]  K Henrick,et al.  Electronic Reprint Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions , 2022 .

[2]  G. Wilkin,et al.  Vesicle exocytosis stimulated by α‐latrotoxin is mediated by latrophilin and requires both external and stored Ca2+ , 1998, The EMBO journal.

[3]  Charles D Schwieters,et al.  Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics. , 2003, Journal of the American Chemical Society.

[4]  P. Usherwood,et al.  Latrophilin is required for toxicity of black widow spider venom in Caenorhabditis elegans. , 2004, The Biochemical journal.

[5]  A. Surolia,et al.  Thermodynamics of monosaccharide binding to concanavalin A, pea (Pisum sativum) lectin, and lentil (Lens culinaris) lectin. , 1993, The Journal of biological chemistry.

[6]  I. Campbell,et al.  Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis , 2007, The EMBO journal.

[7]  K. Titani,et al.  Amino acid sequence and molecular characterization of a D-galactoside-specific lectin purified from sea urchin (Anthocidaris crassispina) eggs. , 1991, Biochemistry.

[8]  H. Schiöth,et al.  The Adhesion GPCRs: A unique family of G protein-coupled receptors with important roles in both central and peripheral tissues , 2007, Cellular and Molecular Life Sciences.

[9]  E. Ruoslahti,et al.  The C-type lectin domains of lecticans, a family of aggregating chondroitin sulfate proteoglycans, bind tenascin-R by protein-protein interactions independent of carbohydrate moiety. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[10]  T. Ogawa,et al.  Structural characterization of a rhamnose-binding glycoprotein (lectin) from Spanish mackerel (Scomberomorous niphonius) eggs. , 2007, Biochimica et biophysica acta.

[11]  N. Sharon Lectins: Carbohydrate-specific Reagents and Biological Recognition Molecules , 2007, Journal of Biological Chemistry.

[12]  B D Sykes,et al.  1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects , 1995, Journal of biomolecular NMR.

[13]  T. Ogawa,et al.  Rhamnose-binding Lectins from Steelhead Trout (Oncorhynchus mykiss) Eggs Recognize Bacterial Lipopolysaccharides and Lipoteichoic Acid , 2002, Bioscience, biotechnology, and biochemistry.

[14]  T. Böckers,et al.  Interaction of G-protein-coupled receptors with synaptic scaffolding proteins. , 2002, Biochemical Society transactions.

[15]  E. Grishin,et al.  α-Latrotoxin Receptor, Latrophilin, Is a Novel Member of the Secretin Family of G Protein-coupled Receptors* , 1997, The Journal of Biological Chemistry.

[16]  Angela M. Gronenborn,et al.  The Impact of Direct Refinement against 13Cα and 13Cβ Chemical Shifts on Protein Structure Determination by NMR , 1995 .

[17]  Tianfu Wu,et al.  NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[18]  J. Wrana,et al.  The Slit Receptor EVA-1 Coactivates a SAX-3/Robo–Mediated Guidance Signal in C. elegans , 2007, Science.

[19]  Chris Sander,et al.  Touring protein fold space with Dali/FSSP , 1998, Nucleic Acids Res..

[20]  A. Surolia,et al.  Thermodynamics of Monosaccharide and Disaccharide Binding to Erythrina corallodendron Lectin* , 1996, The Journal of Biological Chemistry.

[21]  J. Gready,et al.  The C‐type lectin‐like domain superfamily , 2005, The FEBS journal.

[22]  D. S. Garrett,et al.  R-factor, Free R, and Complete Cross-Validation for Dipolar Coupling Refinement of NMR Structures , 1999 .

[23]  A. Bax,et al.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology , 1999, Journal of biomolecular NMR.

[24]  The first extracellular domain of corticotropin releasing factor-R1 contains major binding determinants for urocortin and astressin. , 1998, Endocrinology.

[25]  C. Akey,et al.  The crystal structure of nucleoplasmin-core: implications for histone binding and nucleosome assembly. , 2001, Molecular cell.

[26]  G. Marius Clore,et al.  Improving the Packing and Accuracy of NMR Structures with a Pseudopotential for the Radius of Gyration , 1999 .

[27]  David S. Wishart,et al.  PREDITOR: a web server for predicting protein torsion angle restraints , 2006, Nucleic Acids Res..

[28]  A. Gronenborn,et al.  Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases , 1996, Protein science : a publication of the Protein Society.

[29]  T. Ogawa,et al.  Isolation and Characterization of Rhamnose-binding Lectins from Eggs of Steelhead Trout (Oncorhynchus mykiss) Homologous to Low Density Lipoprotein Receptor Superfamily* , 1998, The Journal of Biological Chemistry.

[30]  D. Margulies,et al.  The lectin-like NK cell receptor Ly-49A recognizes a carbohydrate-independent epitope on its MHC class I ligand. , 1998, Immunity.

[31]  A M Gronenborn,et al.  The impact of direct refinement against 13C alpha and 13C beta chemical shifts on protein structure determination by NMR. , 1995, Journal of magnetic resonance. Series B.

[32]  Ad Bax,et al.  An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation. , 2004, Journal of the American Chemical Society.

[33]  M. Cuttle,et al.  Latrotoxin Receptor Signaling Engages the UNC-13-Dependent Vesicle-Priming Pathway in C. elegans , 2004, Current Biology.

[34]  D Heinegård,et al.  The Proteoglycans Aggrecan and Versican Form Networks with Fibulin-2 through Their Lectin Domain Binding* , 2001, The Journal of Biological Chemistry.

[35]  S. Somlo,et al.  Identification of two novel polycystic kidney disease-1-like genes in human and mouse genomes. , 2003, Genomics.

[36]  B. Bettler,et al.  Binding site for IgE of the human lymphocyte low-affinity Fc epsilon receptor (Fc epsilon RII/CD23) is confined to the domain homologous with animal lectins. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[37]  A. Surolia,et al.  Thermodynamic analysis of ligand binding to winged bean (Psophocarpus tetragonolobus) acidic agglutinin reveals its specificity for terminally monofucosylated H-reactive sugars. , 1990, The Journal of biological chemistry.

[38]  L. Kay,et al.  A pulsed field gradient isotope‐filtered 3D 13C HMQC‐NOESY experiment for extracting intermolecular NOE contacts in molecular complexes , 1994, FEBS letters.

[39]  Charles D Schwieters,et al.  The Xplor-NIH NMR molecular structure determination package. , 2003, Journal of magnetic resonance.

[40]  K. Nakanishi,et al.  Physicochemical characterization of a ouabain isomer isolated from bovine hypothalamus. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[41]  K. Murayama,et al.  Tandem repeat structure of rhamnose-binding lectin from catfish (Silurus asotus) eggs. , 1999, Biochimica et biophysica acta.

[42]  R. Anholt,et al.  Olfactomedin: purification, characterization, and localization of a novel olfactory glycoprotein. , 1991, Biochemistry.

[43]  C. Dominguez,et al.  HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. , 2003, Journal of the American Chemical Society.

[44]  Y. Ushkaryov,et al.  The latrophilin family: multiply spliced G protein‐coupled receptors with differential tissue distribution , 1999, FEBS letters.