Bacterial small RNA regulators: versatile roles and rapidly evolving variations.
暂无分享,去创建一个
[1] S. Gottesman,et al. MicA sRNA links the PhoP regulon to cell envelope stress , 2010, Molecular microbiology.
[2] Kristin Reiche,et al. The primary transcriptome of the major human pathogen Helicobacter pylori , 2010, Nature.
[3] G. Storz,et al. Reprogramming of anaerobic metabolism by the FnrS small RNA , 2010, Molecular microbiology.
[4] R. Wagner,et al. 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products , 2010, Biological chemistry.
[5] E. Koonin,et al. Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families , 2010, Nucleic acids research.
[6] B. Kallipolitis,et al. Translational Regulation of Gene Expression by an Anaerobically Induced Small Non-coding RNA in Escherichia coli* , 2010, The Journal of Biological Chemistry.
[7] B. Kallipolitis,et al. Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes , 2009, Nucleic acids research.
[8] B. Görke,et al. Dual control by perfectly overlapping σ54‐ and σ70‐promoters adjusts small RNA GlmY expression to different environmental signals , 2009, Molecular microbiology.
[9] G. Barton,et al. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. , 2009, RNA.
[10] S. Gottesman,et al. A PhoQ/P‐regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides , 2009, Molecular microbiology.
[11] M. Suyama,et al. Transcriptome Complexity in a Genome-Reduced Bacterium , 2009, Science.
[12] T. Link,et al. Structure of Escherichia coli Hfq bound to polyriboadenylate RNA , 2009, Proceedings of the National Academy of Sciences.
[13] A. Malhotra,et al. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). , 2009, Genes & development.
[14] C. Buchrieser,et al. A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes , 2009, Cell.
[15] J. Vogel,et al. Experimental approaches for the discovery and characterization of regulatory small RNA. , 2009, Current opinion in microbiology.
[16] J. Vogel,et al. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq‐dependent small RNA , 2009, Molecular microbiology.
[17] B. Voß,et al. Evidence for a major role of antisense RNAs in cyanobacterial gene regulation , 2009, Molecular systems biology.
[18] P. Babitzke,et al. Regulation of translation initiation by RNA binding proteins. , 2009, Annual review of microbiology.
[19] Pei Fen Kuan,et al. Rho directs widespread termination of intragenic and stable RNA transcription , 2009, Proceedings of the National Academy of Sciences.
[20] P. Valentin‐Hansen,et al. Switching off small RNA regulation with trap‐mRNA , 2009, Molecular microbiology.
[21] L. Bossi,et al. Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. , 2009, Genes & development.
[22] R. Parker,et al. Stressing Out over tRNA Cleavage , 2009, Cell.
[23] J. Vogel,et al. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation , 2009, Nature Structural &Molecular Biology.
[24] K. Wassarman,et al. 6S RNA binding to Eσ70 requires a positively charged surface of σ70 region 4.2 , 2009, Molecular microbiology.
[25] K. Sneppen,et al. Dynamic features of gene expression control by small regulatory RNAs , 2009, Proceedings of the National Academy of Sciences.
[26] Richard S. P. Horler,et al. Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence , 2009, Nucleic acids research.
[27] É. Massé,et al. Small RNA‐induced differential degradation of the polycistronic mRNA iscRSUA , 2009, The EMBO journal.
[28] M. Vergassola,et al. The Listeria transcriptional landscape from saprophytism to virulence , 2009, Nature.
[29] Gene W. Tyson,et al. Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column , 2009, Nature.
[30] K. Keiler,et al. Correct Timing of dnaA Transcription and Initiation of DNA Replication Requires trans Translation , 2009, Journal of bacteriology.
[31] M. Jules,et al. Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila , 2009, Molecular microbiology.
[32] B. Kallipolitis,et al. A conserved small RNA promotes silencing of the outer membrane protein YbfM , 2009, Molecular microbiology.
[33] D. Merrell,et al. Complex Role of Fur in Pathogenesis , 2022 .
[34] B. Bassler,et al. Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing , 2009, The EMBO journal.
[35] S. Gottesman,et al. The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior , 2008, Journal of bacteriology.
[36] L. T. Stauffer,et al. The Small RNA GcvB Regulates sstT mRNA Expression in Escherichia coli , 2008, Journal of bacteriology.
[37] L. T. Stauffer,et al. Role of the sRNA GcvB in regulation of cycA in Escherichia coli. , 2009, Microbiology.
[38] J. Vogel,et al. Small RNA binding to 5' mRNA coding region inhibits translational initiation. , 2008, Molecular cell.
[39] G. Storz,et al. Small Toxic Proteins and the Antisense RNAs That Repress Them , 2008, Microbiology and Molecular Biology Reviews.
[40] T. Hwa,et al. Small RNAs establish gene expression thresholds. , 2008, Current opinion in microbiology.
[41] H. de Reuse,et al. Trans-Translation in Helicobacter pylori: Essentiality of Ribosome Rescue and Requirement of Protein Tagging for Stress Resistance and Competence , 2008, PloS one.
[42] A. Tramonti,et al. GadX/GadW‐dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY–gadW divergent promoters and identification of four novel 42 bp GadX/GadW‐specific binding sites , 2008, Molecular microbiology.
[43] B. Kallipolitis,et al. Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case. , 2008, Journal of molecular biology.
[44] S. Gottesman,et al. The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator , 2008, Nucleic acids research.
[45] B. Bassler,et al. A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics in Vibrio harveyi , 2008, Molecular microbiology.
[46] K. Keiler. Biology of trans-translation. , 2008, Annual review of microbiology.
[47] N. Wingreen,et al. A quantitative comparison of sRNA-based and protein-based gene regulation , 2008, Molecular systems biology.
[48] S. Woodson,et al. The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA. , 2008, RNA.
[49] J. Helmann,et al. The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins , 2008, Proceedings of the National Academy of Sciences.
[50] J. Vogel,et al. Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP‐dependent riboregulator of OmpX synthesis , 2008, Molecular microbiology.
[51] B. Görke,et al. The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli , 2008, Nucleic acids research.
[52] K. Wassarman,et al. Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of σ70 , 2008, Molecular microbiology.
[53] A. Feig,et al. The RNA binding protein Hfq interacts specifically with tRNAs. , 2008, RNA.
[54] J. Vogel,et al. Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation , 2008, PLoS biology.
[55] Hanah Margalit,et al. Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence , 2008, Nucleic acids research.
[56] B. Bassler,et al. A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode. , 2008, Genes & development.
[57] C. K. Vanderpool,et al. A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide , 2007, Proceedings of the National Academy of Sciences.
[58] Raju Tomer,et al. A small non‐coding RNA of the invasion gene island (SPI‐1) represses outer membrane protein synthesis from the Salmonella core genome , 2007, Molecular microbiology.
[59] J. Vogel,et al. A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. , 2007, Genes & development.
[60] B. Görke,et al. Feedback control of glucosamine‐6‐phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli , 2007, Molecular microbiology.
[61] K. Wassarman. 6S RNA: a regulator of transcription , 2007, Molecular microbiology.
[62] Florian C. Oberstrass,et al. Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA , 2007, Nature Structural &Molecular Biology.
[63] S. Altman. A view of RNase P. , 2007, Molecular bioSystems.
[64] R. Sauer,et al. The tmRNA system for translational surveillance and ribosome rescue. , 2007, Annual review of biochemistry.
[65] I. Moll,et al. In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA , 2007, Nucleic acids research.
[66] F. Vandenesch,et al. Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. , 2007, Genes & development.
[67] Jean-François Jacques,et al. The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis , 2007, Molecular microbiology.
[68] S. Gottesman,et al. σE Regulates and Is Regulated by a Small RNA in Escherichia coli , 2007 .
[69] C. K. Vanderpool. Physiological consequences of small RNA-mediated regulation of glucose-phosphate stress. , 2007, Current opinion in microbiology.
[70] Jonathan Livny,et al. Identification of small RNAs in diverse bacterial species. , 2007, Current opinion in microbiology.
[71] T. Link,et al. Hfq structure, function and ligand binding. , 2007, Current opinion in microbiology.
[72] P. Babitzke,et al. CsrB sRNA family: sequestration of RNA-binding regulatory proteins. , 2007, Current opinion in microbiology.
[73] K. Weaver. Emerging plasmid-encoded antisense RNA regulated systems. , 2007, Current opinion in microbiology.
[74] É. Massé,et al. Small RNAs controlling iron metabolism. , 2007, Current opinion in microbiology.
[75] S. Brantl. Regulatory mechanisms employed by cis-encoded antisense RNAs. , 2007, Current opinion in microbiology.
[76] Brian Tjaden,et al. A Novel Fur- and Iron-Regulated Small RNA, NrrF, Is Required for Indirect Fur-Mediated Regulation of the sdhA and sdhC Genes in Neisseria meningitidis , 2007, Journal of bacteriology.
[77] R. Wagner,et al. Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts , 2007, Nucleic acids research.
[78] E. Wagner,et al. Sigma E controls biogenesis of the antisense RNA MicA , 2007, Nucleic acids research.
[79] B. Bassler,et al. Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. , 2007, Genes & development.
[80] E. Wagner,et al. RNA antitoxins. , 2007, Current opinion in microbiology.
[81] K. Wassarman,et al. Synthesis-Mediated Release of a Small RNA Inhibitor of RNA Polymerase , 2006, Science.
[82] J. Vogel,et al. σE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay , 2006, Molecular microbiology.
[83] J. Vogel,et al. Small non-coding RNAs and the bacterial outer membrane. , 2006, Current opinion in microbiology.
[84] P. Valentin‐Hansen,et al. Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins. , 2006, Journal of molecular biology.
[85] U. Gerth,et al. The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism , 2006, Molecular microbiology.
[86] S. R. Kushner,et al. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. , 2006, Genes & development.
[87] G. Storz,et al. Modulating the outer membrane with small RNAs. , 2006, Genes & development.
[88] R. Kulkarni,et al. Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri , 2006, Nucleic acids research.
[89] B. Kallipolitis,et al. Identification of small Hfq-binding RNAs in Listeria monocytogenes. , 2006, RNA.
[90] P. Bouloc,et al. Down-regulation of Porins by a Small RNA Bypasses the Essentiality of the Regulated Intramembrane Proteolysis Protease RseP in Escherichia coli* , 2006, Journal of Biological Chemistry.
[91] Ilka M. Axmann,et al. An internal antisense RNA regulates expression of the photosynthesis gene isiA. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[92] M. Bycroft,et al. Functional analysis of the post-transcriptional regulator RsmA reveals a novel RNA-binding site. , 2006, Journal of molecular biology.
[93] P. Vuong,et al. Novel Mechanism of Escherichia coli Porin Regulation , 2006, Journal of bacteriology.
[94] S. Gottesman,et al. Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs , 2006, Molecular microbiology.
[95] J. Bliska,et al. A Role for the SmpB-SsrA System in Yersinia pseudotuberculosis Pathogenesis , 2006, PLoS pathogens.
[96] N. Majdalani,et al. Small RNA regulators and the bacterial response to stress. , 2006, Cold Spring Harbor symposia on quantitative biology.
[97] P. Valentin‐Hansen,et al. Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase‐dependent control , 2005, Molecular microbiology.
[98] Robert G. Martin,et al. Detection of low-level promoter activity within open reading frame sequences of Escherichia coli , 2005, Nucleic acids research.
[99] S. Gottesman,et al. Effect of RyhB Small RNA on Global Iron Use in Escherichia coli , 2005, Journal of bacteriology.
[100] B. Felden,et al. Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[101] P. Babitzke,et al. RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. , 2005, RNA.
[102] J. Vogel,et al. Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. , 2005, Genes & development.
[103] Jessica M. Silvaggi,et al. Small Untranslated RNA Antitoxin in Bacillus subtilis , 2005, Journal of bacteriology.
[104] A. Chatterjee,et al. ExpR, a LuxR Homolog of Erwinia carotovora subsp. carotovora, Activates Transcription of rsmA, Which Specifies a Global Regulatory RNA-Binding Protein , 2005, Journal of bacteriology.
[105] P. Gutiérrez,et al. Solution Structure of the Carbon Storage Regulator Protein CsrA from Escherichia coli , 2005, Journal of bacteriology.
[106] W. L. Ruzzo,et al. 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. , 2005, RNA.
[107] A. Hüttenhofer,et al. Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog , 2005, Nucleic acids research.
[108] R. Stroud,et al. Targeting proteins to membranes: structure of the signal recognition particle. , 2005, Current opinion in structural biology.
[109] K. Wassarman,et al. A highly conserved 6S RNA structure is required for regulation of transcription , 2005, Nature Structural &Molecular Biology.
[110] V. Bordeau,et al. A Small Bacterial RNA Regulates a Putative ABC Transporter* , 2005, Journal of Biological Chemistry.
[111] F. Vandenesch,et al. Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression , 2005, The EMBO journal.
[112] G. Storz,et al. Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli , 2005, Nucleic acids research.
[113] T. Inada,et al. Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli. , 2005, Genes & development.
[114] N. Majdalani,et al. Bacterial Small RNA Regulators , 2005, Critical reviews in biochemistry and molecular biology.
[115] S. Gottesman,et al. Involvement of a novel transcriptional activator and small RNA in post‐transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system , 2004, Molecular microbiology.
[116] G. Storz,et al. GadY, a Small-RNA Regulator of Acid Response Genes in Escherichia coli , 2004, Journal of bacteriology.
[117] G. Storz,et al. MicC, a Second Small-RNA Regulator of Omp Protein Expression in Escherichia coli , 2004, Journal of bacteriology.
[118] N. Wingreen,et al. The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio harveyi and Vibrio cholerae , 2004, Cell.
[119] S. Gottesman,et al. Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[120] B. Kallipolitis,et al. The RNA-Binding Protein Hfq of Listeria monocytogenes: Role in Stress Tolerance and Virulence , 2004, Journal of bacteriology.
[121] J. Vogel,et al. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. , 2003, Nucleic acids research.
[122] G. Storz,et al. Global analysis of small RNA and mRNA targets of Hfq , 2003, Molecular microbiology.
[123] S. Gottesman,et al. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. , 2003, Genes & development.
[124] L. Shapiro,et al. tmRNA Is Required for Correct Timing of DNA Replication in Caulobacter crescentus , 2003, Journal of bacteriology.
[125] T. Abo,et al. The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons. , 2002, RNA.
[126] N. Majdalani,et al. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA , 2002, Molecular microbiology.
[127] P. Valentin‐Hansen,et al. Structures of the pleiotropic translational regulator Hfq and an Hfq–RNA complex: a bacterial Sm‐like protein , 2002, The EMBO journal.
[128] P. Valentin‐Hansen,et al. Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. , 2002, Genes & development.
[129] S. Gottesman,et al. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[130] E. Wagner,et al. Antisense RNAs in bacteria and their genetic elements. , 2002, Advances in genetics.
[131] R. Sauer,et al. Identification of Endogenous SsrA-tagged Proteins Reveals Tagging at Positions Corresponding to Stop Codons* , 2001, The Journal of Biological Chemistry.
[132] P. Babitzke,et al. Positive regulation of motility and flhDC expression by the RNA‐binding protein CsrA of Escherichia coli , 2001, Molecular microbiology.
[133] N. Majdalani,et al. Regulation of RpoS by a novel small RNA: the characterization of RprA. , 2001, Molecular microbiology.
[134] R. Lease,et al. Riboregulation by DsrA RNA: trans‐actions for global economy , 2000, Molecular microbiology.
[135] M. Urbanowski,et al. The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli , 2000, Molecular microbiology.
[136] T. Abo,et al. SsrA‐mediated tagging and proteolysis of LacI and its role in the regulation of lac operon , 2000, The EMBO journal.
[137] M. Wolfgang,et al. Charged tmRNA but not tmRNA‐mediated proteolysis is essential for Neisseria gonorrhoeae viability , 2000, The EMBO journal.
[138] G. Storz,et al. The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding , 1998, The EMBO journal.
[139] N. Majdalani,et al. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[140] M. Cusick,et al. Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[141] M. Sugiura,et al. A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301 , 1997, FEBS letters.
[142] G. Storz,et al. A Small, Stable RNA Induced by Oxidative Stress: Role as a Pleiotropic Regulator and Antimutator , 1997, Cell.
[143] T. Romeo,et al. Phylogenetic distribution of the global regulatory gene csrA among eubacteria. , 1996, Gene.
[144] S. Gottesman,et al. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli. , 1996, The EMBO journal.
[145] S. Arvidson,et al. Activation of alpha‐toxin translation in Staphylococcus aureus by the trans‐encoded antisense RNA, RNAIII. , 1995, The EMBO journal.
[146] S. Gottesman,et al. A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[147] S. Gottesman,et al. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli , 1994, Journal of bacteriology.
[148] A. Campbell. Chromosomal insertion sites for phages and plasmids , 1992, Journal of bacteriology.
[149] F. Tétart,et al. Regulation of the expression of the cell‐cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules , 1992, Molecular microbiology.
[150] L. Krinke,et al. RNase III-dependent hydrolysis of lambda cII-O gene mRNA mediated by lambda OOP antisense RNA. , 1990, Genes & development.
[151] N. Delihas,et al. micF RNA binds to the 5' end of ompF mRNA and to a protein from Escherichia coli. , 1990, Biochemistry.
[152] M. Inouye,et al. micF RNA in ompB mutants of Escherichia coli: different pathways regulate micF RNA levels in response to osmolarity and temperature change , 1990, Journal of bacteriology.
[153] M. Faubladier,et al. Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing. , 1990, Journal of molecular biology.
[154] J P Bouché,et al. Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA , 1989, Molecular microbiology.
[155] L. Krinke,et al. OOP RNA, produced from multicopy plasmids, inhibits lambda cII gene expression through an RNase III-dependent mechanism. , 1987, Genes & development.