The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deu

One model for gene rearrangement specifies that a portion of the genome is duplicated, followed by the random loss of the now supernumerary genes. Depending on which genes are lost, this process may reorder the duplicated block of genes. Comparisons of mitochondrial genomes have many advantages for addressing the processes of molecular evolution, including gene rearrangement. Here is an analysis of those variations in mitochondrial gene arrangement observed so far among the best sampled group, the deuterostome animals. The duplication/ random loss model is invoked to potentially reconstruct many, though not all, of these rearrangements.

[1]  Y. Yoneyama [The nucleotide sequences of the heavy and light strand replication origins of the Rana catesbeiana mitochondrial genome]. , 1987, Nihon Ika Daigaku zasshi.

[2]  R. J. Hoffmann,et al.  A novel mitochondrial genome organization for the blue mussel, Mytilus edulis. , 1992, Genetics.

[3]  W. Brown,et al.  Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA. , 1994, Genetics.

[4]  T. Kocher,et al.  Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. , 1995, Genetics.

[5]  M. Nishida,et al.  Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. , 1995, Molecular biology and evolution.

[6]  Timothy M. Collins,et al.  Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements , 1995, Nature.

[7]  M. Nishida,et al.  Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. , 1996, Molecular biology and evolution.

[8]  D. Mindell,et al.  Mitochondrial gene order adjacent to the control region in crocodile, turtle, and tuatara. , 1996, Molecular phylogenetics and evolution.

[9]  D. Lunt,et al.  Animal mitochondrial DMA recombination , 1997, Nature.

[10]  J. Macey,et al.  Evolutionary Shifts in Three Major Structural Features of the Mitochondrial Genome Among Iguanian Lizards , 1997, Journal of Molecular Evolution.

[11]  R. H. Thomas,et al.  Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures. , 1997, Genetics.

[12]  D. Mindell,et al.  Multiple independent origins of mitochondrial gene order in birds. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[13]  J. Macey,et al.  Phylogenetic relationships among Agamid lizards of the Laudakia caucasia species group: testing hypotheses of biogeographic fragmentation and an area cladogram for the Iranian Plateau. , 1998, Molecular phylogenetics and evolution.

[14]  M. Nishida,et al.  The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. , 1998, Genetics.

[15]  T. Papenfuss,et al.  Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement. , 1998, Molecular biology and evolution.

[16]  A. Arndt,et al.  Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria. , 1998, Molecular biology and evolution.

[17]  Jeffrey L. Boore,et al.  Gene translocation links insects and crustaceans , 1998, Nature.

[18]  J. Boore,et al.  Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. , 1998, Current opinion in genetics & development.

[19]  S. Pääbo,et al.  Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata). , 1999, Genetics.

[20]  J. Boore,et al.  Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus) , 1999, Molecular biology and evolution.

[21]  J. Boore Animal mitochondrial genomes. , 1999, Nucleic acids research.

[22]  P. Awadalla,et al.  Linkage disequilibrium and recombination in hominid mitochondrial DNA. , 1999, Science.

[23]  D. Bouchon,et al.  Organization of the large mitochondrial genome in the isopod Armadillidium vulgare. , 1999, Genetics.

[24]  J. Boore,et al.  Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. , 2000, Molecular biology and evolution.