Non-specific, on-probe cleanup methods for MALDI-MS samples.

High concentrations of contaminants such as salts and surfactants are often present in biological samples to solubilize or stabilize analytes such as proteins. Unfortunately, the presence of those contaminants often precludes direct analysis by MALDI-MS. Selective adsorption of analytes directly on modified MALDI probes, followed by rinsing to remove contaminants, overcomes this problem. This review focuses on various modifications of MALDI probes to allow the adsorption of proteins and DNA, even in a large excess of salt or surfactant. Interfaces deposited on the MALDI probes to adsorb analytes include films of commercial polymers, thin layers of matrix crystals, self-assembled monolayers, and ultrathin polymer films. Hydrophobic and ionic interactions both effect analyte adsorption on those interfaces, and patterned interfaces allow the concentration and purification of analyte molecules.

[1]  S. Weinberger,et al.  Current developments in SELDI affinity technology. , 2004, Mass spectrometry reviews.

[2]  M. Bruening,et al.  Patterned monolayer/polymer films for analysis of dilute or salt-contaminated protein samples by MALDI-MS. , 2003, Analytical chemistry.

[3]  D. Hochstrasser,et al.  Enhanced protein recovery after electrotransfer using square wave alternating voltage. , 2002, Analytical biochemistry.

[4]  Thomas Laurell,et al.  On‐chip microextraction for proteomic sample preparation of in‐gel digests , 2002, Proteomics.

[5]  J. Littlechild,et al.  Chloroplast Glyceraldehyde-3-phosphate Dehydrogenase Contains a Single Disulfide Bond Located in the C-terminal Extension to the B Subunit* , 2001, The Journal of Biological Chemistry.

[6]  P. Ross,et al.  Application of DNA-binding polymers for preparation of DNA for analysis by matrix-assisted laser desorption/ionization mass spectrometry. , 2001, Rapid communications in mass spectrometry : RCM.

[7]  A. Doucette,et al.  Two-layer sample preparation method for MALDI mass spectrometric analysis of protein and peptide samples containing sodium dodecyl sulfate. , 2001, Analytical chemistry.

[8]  H. Perreault,et al.  Application of nonporous polyurethane (PU) membranes and porous PU thin films as sample supports for MALDI-MS of wheat proteins , 2001 .

[9]  J. Allison,et al.  5-Methoxysalicylic acid and spermine: A new matrix for the matrix-assisted laser desorption/ionization mass spectrometry analysis of oligonucleotides , 2001, Journal of the American Society for Mass Spectrometry.

[10]  J. Watson,et al.  Determination of the disulfide structure of sillucin, a highly knotted, cysteine-rich peptide, by cyanylation/cleavage mass mapping. , 2001, Biochemistry.

[11]  E. Nordhoff,et al.  Alpha-cyano-4-hydroxycinnamic acid affinity sample preparation. A protocol for MALDI-MS peptide analysis in proteomics. , 2001, Analytical chemistry.

[12]  M. Cadene,et al.  A robust, detergent-friendly method for mass spectrometric analysis of integral membrane proteins. , 2000, Analytical chemistry.

[13]  J. Callahan,et al.  Desalting of in-gel-digested protein sample with mini-C18 columns for matrix-assisted laser desorption ionization time of flight peptide mass fingerprinting. , 2000, Analytical biochemistry.

[14]  E. Nordhoff,et al.  Prestructured MALDI-MS sample supports. , 2000, Analytical chemistry.

[15]  K. Gevaert,et al.  Protein identification methods in proteomics , 2000, Electrophoresis.

[16]  K. O. Börnsen Influence of salts, buffers, detergents, solvents, and matrices on MALDI-MS protein analysis in complex mixtures. , 2000, Methods in molecular biology.

[17]  Solid-phase extraction/MALDI-MS: extended ion-pairing surfaces for the on-target cleanup of protein samples. , 1999, Analytical chemistry.

[18]  K. Blennow,et al.  Removal of sodium dodecyl sulfate from protein samples prior to matrix-assisted laser desorption/ionization mass spectrometry. , 1999, Rapid communications in mass spectrometry : RCM.

[19]  Micron-Scale Patterning of Hyperbranched Polymer Films by Micro-Contact Printing , 1999 .

[20]  E. Nordhoff,et al.  Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry. , 1999, Journal of mass spectrometry : JMS.

[21]  K. Hung,et al.  Use of poly(tetrafluoroethylene)s as a sample support for the MALDI-TOF analysis of DNA and proteins. , 1999, Analytical chemistry.

[22]  H. Perreault,et al.  Characterization of hemoglobin variants by MALDI-TOF MS using a polyurethane membrane as the sample support. , 1998, Analytical chemistry.

[23]  N. N. Shah,et al.  Optimization of a hydrophobic solid-phase extraction interface for matrix-assisted laser desorption/ionization. , 1998, Journal of mass spectrometry : JMS.

[24]  D. Touati,et al.  Coupling 2D SDS-PAGE with CNBr cleavage and MALDI-TOFMS: a strategy applied to the identification of proteins induced by a hypochlorous acid stress in Escherichia coli. , 1998, Analytical chemistry.

[25]  On-probe solid-phase extraction/MALDI-MS using ion-pairing interactions for the cleanup of peptides and proteins. , 1998, Analytical chemistry.

[26]  E. Schmid,et al.  Determination of Mercapturic Acids Using 1,4-Dihydroxynaphthalene, a New Matrix for Matrix-Assisted UV Laser Desorption/Ionization Mass Spectrometry , 1998 .

[27]  H. Rashidzadeh,et al.  Use of paraffin wax film in MALDI-TOF analysis of DNA. , 1998, Analytical chemistry.

[28]  R. Cotter,et al.  Purification of contaminated peptides and proteins on synthetic membrane surfaces for matrix-assisted laser desorption/ionization mass spectrometry. , 1998, Analytical chemistry.

[29]  A. Brockman,et al.  A desalting approach for MALDI-MS using on-probe hydrophobic self-assembled monolayers. , 1997, Analytical chemistry.

[30]  H. Perreault,et al.  Use of a non-porous polyurethane membrane as a sample support for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of peptides and proteins. , 1997, Rapid communications in mass spectrometry : RCM.

[31]  F Hillenkamp,et al.  Analysis of proteins by direct-scanning infrared-MALDI mass spectrometry after 2D-PAGE separation and electroblotting. , 1997, Analytical chemistry.

[32]  Martin Kussmann,et al.  Matrix‐assisted Laser Desorption/Ionization Mass Spectrometry Sample Preparation Techniques Designed for Various Peptide and Protein Analytes , 1997 .

[33]  J. Watson,et al.  Mercaptobenzothiazoles: A new class of matrices for laser desorption ionization mass spectrometry , 1997 .

[34]  R. Whittal,et al.  Analysis of Single Mammalian Cell Lysates by Mass Spectrometry , 1996 .

[35]  R. Oleschuk,et al.  The separation and isolation of gold by selective extraction and transport through a polyurethane ether-type membrane. , 1996, Talanta.

[36]  T. Shaler,et al.  Effect of impurities on the matrix-assisted laser desorption mass spectra of single-stranded oligodeoxynucleotides. , 1996, Analytical chemistry.

[37]  H. Widmer,et al.  Matrix Compatible Buffers for Analysis of Proteins with Matrix‐assisted Laser Desorption/Ionization Mass Spectrometry , 1996 .

[38]  D. Lubman,et al.  Characterization of two new matrices for matrix-assisted laser desorption/ionization mass spectrometry. , 1996, Rapid Communications in Mass Spectrometry.

[39]  M. Stoeckli,et al.  Studies on the selection of new matrices for ultraviolet matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. , 1996, Rapid communications in mass spectrometry : RCM.

[40]  R. Orlando,et al.  A new matrix for matrix-assisted laser desorption/ionization on magnetic sector instruments with point detectors. , 1996, Rapid communications in mass spectrometry : RCM.

[41]  F. Lottspeich,et al.  Ultraviolet matrix assisted laser desorption ionization‐mass spectrometry of electroblotted proteins , 1996, Electrophoresis.

[42]  C. Fenselau,et al.  Surfaces for interfacing protein gel electrophoresis directly with mass spectrometry , 1995 .

[43]  A. Alexander,et al.  Polyethylene membrane as a sample support for direct matrix-assisted laser desorption/ionization mass spectrometric analysis of high mass proteins. , 1995, Analytical chemistry.

[44]  A. Vertes,et al.  New matrices and accelerating voltage effects in matrix‐assisted laser desorption/ionization of synthetic polymers , 1995 .

[45]  M. Mann,et al.  Improved mass accuracy in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of peptides , 1994, Journal of the American Society for Mass Spectrometry.

[46]  D. Lubman,et al.  Matrix-assisted laser desorption/ionization using an active perfluorosulfonated ionomer film substrate. , 1994, Analytical chemistry.

[47]  Peter Roepstorff,et al.  Improved resolution and very high sensitivity in MALDI TOF of matrix surfaces made by fast evaporation , 1994 .

[48]  C Fenselau,et al.  Polyvinylidene difluoride (PVDF): an interface for gel electrophoresis and matrix-assisted laser desorption/ionization mass spectrometry. , 1994, Biochemical Society transactions.

[49]  J. Allison,et al.  Direct matrix-assisted laser desorption ionization mass spectrometric analysis of proteins immobilized on nylon-based membranes , 1994, Journal of the American Society for Mass Spectrometry.

[50]  C. Fenselau,et al.  Poly(vinylidene difluoride) membranes as the interface between laser desorption mass spectrometry, gel electrophoresis, and in situ proteolysis , 1994 .

[51]  Friedrich Lottspeich,et al.  Matrix-assisted laser desorption ionization mass spectrometry of proteins electroblotted after polyacrylamide gel electrophoresis , 1994 .

[52]  R. Beavis,et al.  A method to increase contaminant tolerance in protein matrix‐assisted laser desorption/ionization by the fabrication of thin protein‐doped polycrystalline films , 1994 .

[53]  R. Beavis,et al.  Growing protein‐doped sinapic acid crystals for laser desorption: An alternative preparation method for difficult samples , 1993 .

[54]  R. Beavis,et al.  Epitaxial protein inclusion in sinapic acid crystals , 1993 .

[55]  J. Cottrell,et al.  Sample Immobilisation Protocols for Matrix Assisted Laser Desorption Mass Spectrometry , 1993 .

[56]  F Hillenkamp,et al.  Matrix-assisted laser desorption/ionization mass spectrometry of nucleic acids with wavelengths in the ultraviolet and infrared. , 1992, Rapid communications in mass spectrometry : RCM.

[57]  J. Cottrell,et al.  Sample immobilization protocols for matrix-assisted laser-desorption mass spectrometry. , 1992, Rapid communications in mass spectrometry : RCM.

[58]  B. Chait,et al.  High-accuracy molecular mass determination of proteins using matrix-assisted laser desorption mass spectrometry. , 1990, Analytical chemistry.

[59]  M. Karas,et al.  Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. , 1988, Analytical chemistry.

[60]  Plasma desorption mass spectrometry of peptides and proteins adsorbed on nitrocellulose , 1986 .

[61]  C. Tanford,et al.  The gross conformation of protein-sodium dodecyl sulfate complexes. , 1970, The Journal of biological chemistry.