A subspace time-domain algorithm for automated NMR spectral normalization.

Recently, two methods have been proposed for quantitatively comparing NMR spectra of control and treated samples, in order to examine the possible occurring variations in cell metabolism and/or structure in response to numerous physical, chemical, and biological agents. These methods are the maximum superposition normalization algorithm (MaSNAl) and the minimum rank normalization algorithm (MiRaNAl). In this paper a new subspace-based time-domain normalization algorithm, denoted by SuTdNAl (subspace time-domain normalization algorithm), is presented. By the determination of the intersection of the column spaces of two Hankel matrices, the common signal poles and further on the components having proportionally varying amplitudes are detected. The method has the advantage that it is computationally less intensive than the MaSNAl and the MiRaNAl. Furthermore, no approximate estimate of the normalization factor is required. The algorithm was tested by Monte Carlo simulations on a set of simulation signals. It was shown that the SuTdNAl has a statistical performance similar to that of the MiRaNAl, which itself is an improvement over the MaSNAl. Furthermore, two samples of known contents are compared with the MiRaNAl, the SuTdNAl, and an older method using a standard. Finally, the SuTdNAl is tested on a realistic simulation example derived from an in vitro measurement on cells.

[1]  H. Bachelard,et al.  NMR Spectroscopy in Neurochemistry , 1993, Journal of Neurochemistry.

[2]  P L Indovina,et al.  A new algorithm for NMR spectral normalization. , 1999, Journal of magnetic resonance.

[3]  P W Kuchel,et al.  1H and 31P NMR and HPLC studies of mouse L1210 Leukemia cell extracts: The effect of Au(I) and Cu(I) diphosphine complexes on the cell metabolism , 1991, Magnetic resonance in medicine.

[4]  A. Derome,et al.  Modern Nmr Techniques for Chemistry Research , 1987 .

[5]  H Degani,et al.  Lipid metabolism in large T47D human breast cancer spheroids: 31P- and 13C-NMR studies of choline and ethanolamine uptake. , 1992, Biochimica et biophysica acta.

[6]  Sabine Van Huffel,et al.  Total least squares problem - computational aspects and analysis , 1991, Frontiers in applied mathematics.

[7]  Sebastián Cerdán,et al.  1H NMR detection of cerebral myo‐inositol , 1985, FEBS letters.

[8]  Sabine Van Huffel,et al.  Parameter Estimation with Prior Knowledge of Known Signal Poles for the Quantification of NMR Spectroscopy Data in the Time Domain , 1996 .

[9]  Sabine Van Huffel,et al.  Improved methods for exponential parameter estimation in the presence of known poles and noise , 1997, IEEE Trans. Signal Process..

[10]  P. Indovina,et al.  A time-domain algorithm for NMR spectral normalization. , 2000, Journal of magnetic resonance.

[11]  M. Décorps,et al.  In Vivo, Ex Vivo, and In Vitro One‐ and Two‐Dimensional Nuclear Magnetic Resonance Spectroscopy of an Intracerebral Glioma in Rat Brain: Assignment of Resonances , 1994, Journal of neurochemistry.