Optimized smith waterman processor design for breast cancer early diagnosis

[1]  F. Sanger,et al.  DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[2]  O. Gotoh.  An improved algorithm for matching biological sequences. , 1982, Journal of molecular biology.

[3]  S. B. Needleman,et al.  A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.

[4]  E. Grice,et al.  Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research. , 2015, Advances in wound care.

[5]  Adam Milik,et al.  Considerations on incremental approach to hardware implementation of Smith-Waterman algorithm , 2011, Proceedings of the 18th International Conference Mixed Design of Integrated Circuits and Systems - MIXDES 2011.

[6]  Jaime Velasco-Medina,et al.  Hardware implementation of the Smith-Waterman algorithm using a systolic architecture , 2014, 2014 IEEE 5th Latin American Symposium on Circuits and Systems.

[7]  M. Gerstein,et al.  What is bioinformatics ? An introduction and overview , 2001 .

[8]  Ayman Grada,et al.  Next-generation sequencing: methodology and application. , 2013, The Journal of investigative dermatology.

[9]  Nasir Ahmad,et al.  An optimized and low-cost FPGA-based DNA sequence alignment — A step towards personal genomics , 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[10]  Ahmet T. Erdogan,et al.  An FPGA-based parameterised and scalable optimal solutions for pairwise biological sequence analysis , 2011, 2011 NASA/ESA Conference on Adaptive Hardware and Systems (AHS).

[11]  M S Waterman,et al.  Identification of common molecular subsequences. , 1981, Journal of molecular biology.

[12]  Paulo F. Flores,et al.  Hardware accelerator architecture for simultaneous short-read DNA sequences alignment with enhanced traceback phase , 2012, Microprocess. Microsystems.

[13]  Sean R. Eddy,et al.  Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .