The Pfam protein families database
暂无分享,去创建一个
Robert D. Finn | Sean R. Eddy | Lachlan James M. Coin | Erik L. L. Sonnhammer | Sam Griffiths-Jones | Alex Bateman | Richard Durbin | Volker Hollich | Simon Moxon | Mhairi Marshall | Corin Yeats | Ajay Khanna | David J. Studholme | R. Durbin | S. Eddy | E. Sonnhammer | L. Coin | M. Marshall | R. Finn | A. Bateman | S. Griffiths-Jones | S. Moxon | D. Studholme | Volker Hollich | C. Yeats | Ajay Khanna
[1] Gunter Schneider,et al. Determination of Structural Principles Underlying Three Different Modes of Lymphocytic Choriomeningitis Virus Escape from CTL Recognition1 , 2004, The Journal of Immunology.
[2] Jaap Heringa,et al. An analysis of protein domain linkers: their classification and role in protein folding. , 2002, Protein engineering.
[3] Fidel Ramírez,et al. Functional evaluation of domain-domain interactions and human protein interaction networks , 2007, Bioinform..
[4] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[5] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[6] Liisa Holm,et al. RSDB: representative protein sequence databases have high information content , 2000, Bioinform..
[7] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[8] S. Altuvia,et al. Identification of an Escherichia coli Operon Required for Formation of the O-Antigen Capsule , 2005, Journal of bacteriology.
[9] SödingJohannes. Protein homology detection by HMM--HMM comparison , 2005 .
[10] Robert D. Finn,et al. iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions , 2005, Bioinform..
[11] Jörg Schultz,et al. HMM Logos for visualization of protein families , 2004, BMC Bioinformatics.
[12] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[13] Alex Bateman,et al. Enhanced protein domain discovery using taxonomy , 2004, BMC Bioinformatics.
[14] A. Krogh,et al. A combined transmembrane topology and signal peptide prediction method. , 2004, Journal of molecular biology.
[15] Jérôme Gouzy,et al. ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons , 2000, Nucleic Acids Res..
[16] G. Fang,et al. Anillin Is a Substrate of Anaphase-promoting Complex/Cyclosome (APC/C) That Controls Spatial Contractility of Myosin during Late Cytokinesis*[boxs] , 2005, Journal of Biological Chemistry.
[17] Willy Wriggers,et al. Control of protein functional dynamics by peptide linkers. , 2005, Biopolymers.
[18] C. Khosla,et al. Role of linkers in communication between protein modules. , 2000, Current opinion in chemical biology.
[19] John C. Wootton,et al. Non-globular Domains in Protein Sequences: Automated Segmentation Using Complexity Measures , 1994, Comput. Chem..
[20] P. Tompa,et al. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. , 2005, Journal of molecular biology.
[21] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[22] R. Durbin,et al. Pfam: A comprehensive database of protein domain families based on seed alignments , 1997, Proteins.
[23] L. Holm,et al. Exhaustive enumeration of protein domain families. , 2003, Journal of molecular biology.
[24] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[25] Alex Bateman,et al. QuickTree: building huge Neighbour-Joining trees of protein sequences , 2002, Bioinform..
[26] Sébastien Carrère,et al. The ProDom database of protein domain families: more emphasis on 3D , 2004, Nucleic Acids Res..
[27] D. Haussler,et al. Hidden Markov models in computational biology. Applications to protein modeling. , 1993, Journal of molecular biology.
[28] Jo Handelsman,et al. Metagenomics for studying unculturable microorganisms: cutting the Gordian knot , 2005, Genome Biology.
[29] Zsuzsanna Dosztányi,et al. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content , 2005, Bioinform..
[30] Evelyn Camon,et al. The EMBL Nucleotide Sequence Database , 2004, Nucleic acids research.
[31] Tim J. P. Hubbard,et al. SCOP database in 2004: refinements integrate structure and sequence family data , 2004, Nucleic Acids Res..
[32] Sean R. Eddy,et al. The Distributed Annotation System , 2001, BMC Bioinformatics.
[33] Julie D Thompson,et al. Multiple Sequence Alignment Using ClustalW and ClustalX , 2003, Current protocols in bioinformatics.
[34] Cathy H. Wu,et al. The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..
[35] Liisa Holm,et al. ADDA: a domain database with global coverage of the protein universe , 2004, Nucleic Acids Res..
[36] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.