Early warning of critical transitions in biodiversity from compositional disorder

Abstract Global environmental change presents a clear need for improved leading indicators of critical transitions, especially those that can be generated from compositional data and that work in empirical cases. Ecological theory of community dynamics under environmental forcing predicts an early replacement of slowly replicating and weakly competitive “canary” species by slowly replicating but strongly competitive “keystone” species. Further forcing leads to the eventual collapse of the keystone species as they are replaced by weakly competitive but fast‐replicating “weedy” species in a critical transition to a significantly different state. We identify a diagnostic signal of these changes in the coefficients of a correlation between compositional disorder and biodiversity. Compositional disorder measures unpredictability in the composition of a community, while biodiversity measures the amount of species in the community. In a stochastic simulation, sequential correlations over time switch from positive to negative as keystones prevail over canaries, and back to positive with domination of weedy species. The model finds support in empirical tests on multi‐decadal time series of fossil diatom and chironomid communities from lakes in China. The characteristic switch from positive to negative correlation coefficients occurs for both communities up to three decades preceding a critical transition to a sustained alternate state. This signal is robust to unequal time increments that beset the identification of early‐warning signals from other metrics.

[1]  Max Finlayson,et al.  Regime shifts, thresholds and multiple stable states in freshwater ecosystems; a critical appraisal of the evidence. , 2015, The Science of the total environment.

[2]  Stephen R. Carpenter,et al.  A new approach for rapid detection of nearby thresholds in ecosystem time series , 2014 .

[3]  D. Angeler Revealing a conservation challenge through partitioned long‐term beta diversity: increasing turnover and decreasing nestedness of boreal lake metacommunities , 2013 .

[4]  H. Birks,et al.  Diatom flickering prior to regime shift , 2013, Nature.

[5]  Alan Hastings,et al.  Early warning signals: the charted and uncharted territories , 2013, Theoretical Ecology.

[6]  M. Scheffer,et al.  Early warning signals also precede non-catastrophic transitions , 2013 .

[7]  Stephen R. Carpenter,et al.  Zooplankton provide early warnings of a regime shift in a whole lake manipulation , 2013 .

[8]  Carl Boettiger,et al.  Tipping points: From patterns to predictions , 2013, Nature.

[9]  Marten Scheffer,et al.  Flickering gives early warning signals of a critical transition to a eutrophic lake state , 2012, Nature.

[10]  S. Carpenter,et al.  Anticipating Critical Transitions , 2012, Science.

[11]  E. Zhang,et al.  Alternate trajectories in historic trophic change from two lakes in the same catchment, Huayang Basin, middle reach of Yangtze River, China , 2012, Journal of Paleolimnology.

[12]  S. Carpenter,et al.  Conditional Heteroskedasticity Forecasts Regime Shift in a Whole-Ecosystem Experiment , 2012, Ecosystems.

[13]  C. Díaz‐Paniagua,et al.  Spatio-temporal nested patterns in macroinvertebrate assemblages across a pond network with a wide hydroperiod range , 2011, Oecologia.

[14]  S. Carpenter,et al.  Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment , 2011, Science.

[15]  Derin B. Wysham,et al.  Regime shifts in ecological systems can occur with no warning. , 2010, Ecology letters.

[16]  C. Sayer,et al.  Ecological influences on larval chironomid communities in shallow lakes: implications for palaeolimnological interpretations , 2010 .

[17]  C. Patrick Doncaster,et al.  Ecological Equivalence: A Realistic Assumption for Niche Theory as a Testable Alternative to Neutral Theory , 2009, PloS one.

[18]  S. Carpenter,et al.  Early-warning signals for critical transitions , 2009, Nature.

[19]  S. Elmendorf,et al.  Temporal variability and nestedness in California grassland species composition. , 2009, Ecology.

[20]  Ryan A Chisholm,et al.  Critical slowing down as an indicator of transitions in two-species models. , 2009, Journal of theoretical biology.

[21]  J. Heino,et al.  Temporal variability of nestedness and idiosyncratic species in stream insect assemblages , 2009 .

[22]  Xiangdong Yang,et al.  Surface sediment diatom assemblages and epilimnetic total phosphorus in large, shallow lakes of the Yangtze floodplain: their relationships and implications for assessing long-term eutrophication , 2008 .

[23]  V. Guttal,et al.  Changing skewness: an early warning signal of regime shifts in ecosystems. , 2008, Ecology letters.

[24]  Wolfgang Lucht,et al.  Tipping elements in the Earth's climate system , 2008, Proceedings of the National Academy of Sciences.

[25]  Marten Scheffer,et al.  Shallow lakes theory revisited: various alternative regimes driven by climate, nutrients, depth and lake size , 2007, Hydrobiologia.

[26]  M. Willig,et al.  Effects of large-scale disturbance on metacommunity structure of terrestrial gastropods: temporal trends in nestedness , 2007 .

[27]  Sergei N. Rodionov,et al.  Use of prewhitening in climate regime shift detection , 2006 .

[28]  Miguel A. Rodríguez-Gironés,et al.  A new algorithm to calculate the nestedness temperature of presence–absence matrices , 2006 .

[29]  L. Jost Entropy and diversity , 2006 .

[30]  Y. Xiangdong,et al.  Historical trophic evolutions and their ecological responses from shallow lakes in the middle and lower reaches of the Yangtze River: Case studies on Longgan Lake and Taibai Lake , 2006 .

[31]  S. Carpenter,et al.  Rising variance: a leading indicator of ecological transition. , 2006, Ecology letters.

[32]  S. Rodionov A sequential algorithm for testing climate regime shifts , 2004 .

[33]  Xiangdong Yang,et al.  Lacustrine environment responses to human activities in the past 300 years in Longgan Lake catchment, southeast China , 2002 .

[34]  Robert M. May,et al.  Dynamics of metapopulations : habitat destruction and competitive coexistence , 1992 .

[35]  Wirt Atmar,et al.  Nested subsets and the structure of insular mammalian faunas and archipelagos , 1986 .

[36]  M. Hill Diversity and Evenness: A Unifying Notation and Its Consequences , 1973 .

[37]  A. Beeton,et al.  EUTROPHICATION OF THE ST. LAWRENCE GREAT LAKES1 , 1965 .

[38]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[39]  S. Brooks,et al.  The identification and use of palaearctic chironomidae larvae in palaeoecology , 2007 .

[40]  L. Gustafsson,et al.  Density dependence in resource exploitation: empirical test of Levins’ metapopulation model , 1999 .

[41]  Alfréd EUTROPHICATION OF THE ST. LAWRENCE GREAT LAKES , 1999 .

[42]  D. Tilman Competition and Biodiversity in Spatially Structured Habitats , 1994 .