The role of internal duplication in the evolution of multi-domain proteins
暂无分享,去创建一个
[1] Francisco C. Santos,et al. Cooperation Prevails When Individuals Adjust Their Social Ties , 2006, PLoS Comput. Biol..
[2] David A. Liberles,et al. The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families. , 2008, Gene.
[3] S. Redner,et al. Rate Equation Approach for Growing Networks , 2003 .
[4] J. Raes,et al. Modeling gene and genome duplications in eukaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] E. Eichler,et al. Recent segmental duplications in the working draft assembly of the brown Norway rat. , 2004, Genome research.
[6] B. Kolmerer,et al. The complete primary structure of human nebulin and its correlation to muscle structure. , 1995, Journal of molecular biology.
[7] I. Ispolatov,et al. Duplication-divergence model of protein interaction network. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[8] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[9] S. Teichmann,et al. The folding and evolution of multidomain proteins , 2007, Nature Reviews Molecular Cell Biology.
[10] Thomas Wilhelm,et al. Dynamic simulation of protein complex formation on a genomic scale , 2005, Bioinform..
[11] M. Go. Correlation of DNA exonic regions with protein structural units in haemoglobin , 1981, Nature.
[12] S. Wuchty,et al. Evolutionary cores of domain co-occurrence networks , 2005, BMC Evolutionary Biology.
[13] Reinhard Lipowsky,et al. Dynamic pattern evolution on scale-free networks. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[14] D. Wetlaufer. Nucleation, rapid folding, and globular intrachain regions in proteins. , 1973, Proceedings of the National Academy of Sciences of the United States of America.
[15] M Go,et al. Modular structural units, exons, and function in chicken lysozyme. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[16] R. Doolittle. The multiplicity of domains in proteins. , 1995, Annual review of biochemistry.
[17] Alessandro Vespignani,et al. Dynamical Processes on Complex Networks , 2008 .
[18] D. K. Smith,et al. Sequence profiles of immunoglobulin and immunoglobulin-like domains. , 1997, Journal of molecular biology.
[19] R. Solé,et al. Evolving protein interaction networks through gene duplication. , 2003, Journal of theoretical biology.
[20] Mark E. J. Newman,et al. Structure and Dynamics of Networks , 2009 .
[21] Andreas Wagner,et al. Neutralism and selectionism: a network-based reconciliation , 2008, Nature Reviews Genetics.
[22] E. Koonin,et al. The structure of the protein universe and genome evolution , 2002, Nature.
[23] Andrew D. Moore,et al. Arrangements in the modular evolution of proteins. , 2008, Trends in biochemical sciences.
[24] Erik van Nimwegen,et al. The evolution of domain-content in bacterial genomes , 2008, Biology Direct.
[25] Siegfried Labeit,et al. Titins: Giant Proteins in Charge of Muscle Ultrastructure and Elasticity , 1995, Science.
[26] C Chothia,et al. Domains in proteins: definitions, location, and structural principles. , 1985, Methods in enzymology.
[27] Sarah A Teichmann,et al. Relative rates of gene fusion and fission in multi-domain proteins. , 2005, Trends in genetics : TIG.
[28] Jianzhi Zhang. Evolution by gene duplication: an update , 2003 .
[29] A. Vespignani,et al. Modeling of Protein Interaction Networks , 2001, Complexus.
[30] Vaishali Katju,et al. Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans , 2009, Genome Biology.
[31] Eugene I Shakhnovich,et al. Expanding protein universe and its origin from the biological Big Bang , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[32] E. Bornberg-Bauer,et al. Domain deletions and substitutions in the modular protein evolution , 2006, The FEBS journal.
[33] S J Winder,et al. Nebulin, a helical actin binding protein. , 1994, The EMBO journal.
[34] Philip M. Kim,et al. Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights , 2006, Science.
[35] M. Nowak. Five Rules for the Evolution of Cooperation , 2006, Science.
[36] Z. Gu,et al. Evolutionary analyses of the human genome , 2001, Nature.
[37] Eugene V. Koonin,et al. Modeling genome evolution with a diffusion approximation of a birth-and-death process , 2005, Bioinform..
[38] T. Ohta,et al. On some principles governing molecular evolution. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[39] Pierre Brézellec,et al. Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins , 2006, Bioinform..
[40] S. Redner,et al. Connectivity of growing random networks. , 2000, Physical review letters.
[41] E. Koonin,et al. Birth and death of protein domains: A simple model of evolution explains power law behavior , 2002, BMC Evolutionary Biology.
[42] D. Sankoff,et al. Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. , 1997, Genetics.
[43] R. Doolittle. Similar amino acid sequences: chance or common ancestry? , 1981, Science.
[44] M. Kimura,et al. The neutral theory of molecular evolution. , 1983, Scientific American.
[45] A. Wagner. How the global structure of protein interaction networks evolves , 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[46] A. Force,et al. The probability of preservation of a newly arisen gene duplicate. , 2001, Genetics.
[47] J. Bazan,et al. Structural design and molecular evolution of a cytokine receptor superfamily. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[48] Warren C. Lathe,et al. Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. , 2000, Genome research.
[49] Ingmar Reuter,et al. Integr8 and Genome Reviews: integrated views of complete genomes and proteomes , 2004, Nucleic Acids Res..
[50] S. Wuchty. Scale-free behavior in protein domain networks. , 2001, Molecular biology and evolution.
[51] Arne Elofsson,et al. Expansion of Protein Domain Repeats , 2006, PLoS Comput. Biol..
[52] C. B. Bridges,et al. THE BAR "GENE" A DUPLICATION. , 1936, Science.
[53] W. Gilbert,et al. How big is the universe of exons? , 1990, Science.
[54] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[55] Nikolay V Dokholyan,et al. The architecture of the protein domain universe. , 2004, Gene.
[56] S. Redner,et al. Infinite-order percolation and giant fluctuations in a protein interaction network. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.