Re-alignment of the unmapped reads with base quality score
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Yi Pan | Zhen Zhang | Jianxin Wang | Min Li | Xiaoqing Peng | Qianghua Xiao
[1] M. Daly,et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms , 2001, Nature.
[2] M. Ibrahim. Whole-Genome Resequencing , 2009 .
[3] Matthew Ruffalo,et al. Accurate estimation of short read mapping quality for next-generation genome sequencing , 2012, Bioinform..
[4] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[5] S. Turner,et al. Real-Time DNA Sequencing from Single Polymerase Molecules , 2009, Science.
[6] S. Gabriel,et al. Advances in understanding cancer genomes through second-generation sequencing , 2010, Nature Reviews Genetics.
[7] S. Turner,et al. Real-time DNA sequencing from single polymerase molecules. , 2010, Methods in enzymology.
[8] Nancy F. Hansen,et al. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.
[9] Paul T. Groth,et al. The ENCODE (ENCyclopedia Of DNA Elements) Project , 2004, Science.
[10] Siu-Ming Yiu,et al. SOAP2: an improved ultrafast tool for short read alignment , 2009, Bioinform..
[11] Michael Q. Zhang,et al. Using quality scores and longer reads improves accuracy of Solexa read mapping , 2008, BMC Bioinformatics.
[12] Leping Li,et al. ART: a next-generation sequencing read simulator , 2012, Bioinform..
[13] Ruiqiang Li,et al. SOAP: short oligonucleotide alignment program , 2008, Bioinform..
[14] J. Stephenson. 1000 Genomes Project , 2008 .
[15] A. Jeltsch,et al. The Application of Next Generation Sequencing in DNA Methylation Analysis , 2010, Genes.
[16] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[17] J. Kitzman,et al. Personalized Copy-Number and Segmental Duplication Maps using Next-Generation Sequencing , 2009, Nature Genetics.
[18] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[19] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[20] Heng Li,et al. A survey of sequence alignment algorithms for next-generation sequencing , 2010, Briefings Bioinform..
[21]
R. Durbin,et al.
Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P ,
2022
.
[22]
Matthew Ruffalo,et al.
Comparative analysis of algorithms for next-generation sequencing read alignment
,
2011,
Bioinform..
[23]
Heng Li.
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
,
2013,
1303.3997.
[24]
D. Bentley,et al.
Whole-genome re-sequencing.
,
2006,
Current opinion in genetics & development.
[25]
Michael Stratton,et al.
Genome resequencing and genetic variation
,
2008,
Nature Biotechnology.
[26]
Yi Pan,et al.
EPGA: de novo assembly using the distributions of reads and insert size
,
2015,
Bioinform..
[27]
D. J. Wheeler,et al.
A Block-sorting Lossless Data Compression Algorithm
,
1994
.