tRNAs as regulators of biological processes
暂无分享,去创建一个
[1] Y. Lazebnik,et al. Caspases: enemies within. , 1998, Science.
[2] H. Naganawa,et al. ISOLATION AND PROPERTIES OF VALANIMYCIN, A NEW , 2006 .
[3] R. Sachidanandam,et al. A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo. , 2010, Genes & development.
[4] H. Naganawa,et al. Isolation and properties of valanimycin, a new azoxy antibiotic. , 1986, The Journal of antibiotics.
[5] C. Yanofsky,et al. Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[6] H. Kohn,et al. The molecular basis for the mode of action of bicyclomycin. , 2005, Current drug targets. Infectious disorders.
[7] A. Magyar,et al. The Antibiotic Bicyclomycin Affects the Secondary RNA Binding Site of Escherichia coli Transcription Termination Factor Rho* , 1996, The Journal of Biological Chemistry.
[8] G. Barton,et al. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. , 2009, RNA.
[9] Inna N. Lavrik,et al. Life and death in peripheral T cells , 2007, Nature Reviews Immunology.
[10] Markus Glatzel,et al. CLP1 links tRNA metabolism to progressive motor-neuron loss , 2013, Nature.
[11] Identification of stable, high copy number, medium-sized RNA degradation intermediates that accumulate in plants under non-stress conditions , 2013, Plant Molecular Biology.
[12] Lynne Marshall,et al. Non-coding RNA production by RNA polymerase III is implicated in cancer , 2008, Nature Reviews Cancer.
[13] J. Shepherd. Characterisation of pneumococcal peptidoglycan cross-linking enzymology , 2011 .
[14] Xiaodong Wang,et al. Apaf-1, a Human Protein Homologous to C. elegans CED-4, Participates in Cytochrome c–Dependent Activation of Caspase-3 , 1997, Cell.
[15] Pamela J Green,et al. tRNA cleavage is a conserved response to oxidative stress in eukaryotes. , 2008, RNA.
[16] R. Wek,et al. The histidyl-tRNA synthetase-related sequence in the eIF-2 alpha protein kinase GCN2 interacts with tRNA and is required for activation in response to starvation for different amino acids , 1995, Molecular and cellular biology.
[17] Wen-Hsiung Li,et al. Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing1[W][OA] , 2009, Plant Physiology.
[18] G. Hutvagner,et al. Transfer RNA‐derived fragments: origins, processing, and functions , 2011, Wiley interdisciplinary reviews. RNA.
[19] Andrea Califano,et al. tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma , 2013, Proceedings of the National Academy of Sciences.
[20] J. Schnürer,et al. Lactobacillus plantarum MiLAB 393 Produces the Antifungal Cyclic Dipeptides Cyclo(l-Phe-l-Pro) and Cyclo(l-Phe-trans-4-OH-l-Pro) and 3-Phenyllactic Acid , 2002, Applied and Environmental Microbiology.
[21] G. Abramochkin,et al. Aminoacyl-tRNA Recognition by the Leucyl/Phenylalanyl-tRNA-Protein Transferase* , 1996, The Journal of Biological Chemistry.
[22] G. Hutvagner,et al. Small RNAs derived from the 5′ end of tRNA can inhibit protein translation in human cells , 2013, RNA biology.
[23] N. Sonenberg,et al. Translational control in stress and apoptosis , 2005, Nature Reviews Molecular Cell Biology.
[24] R. Parker,et al. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae , 2009, The Journal of cell biology.
[25] Francesca Tuorto,et al. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. , 2010, Genes & development.
[26] S. Yamasaki,et al. Angiogenin cleaves tRNA and promotes stress-induced translational repression , 2009, The Journal of cell biology.
[27] J. Tobias,et al. Universality and structure of the N-end rule. , 1989, The Journal of biological chemistry.
[28] J. O. Berry,et al. Inducible Expression, Enzymatic Activity, and Origin of Higher Plant Homologues of Bacterial RelA/SpoT Stress Proteins in Nicotiana tabacum* , 2004, Journal of Biological Chemistry.
[29] B. Tindall,et al. Adaptation of Pseudomonas aeruginosa to various conditions includes tRNA‐dependent formation of alanyl‐phosphatidylglycerol , 2009, Molecular microbiology.
[30] T. Pan,et al. tRNA over-expression in breast cancer and functional consequences , 2009, Nucleic acids research.
[31] C. Stathopoulos,et al. On the role of an unusual tRNAGly isoacceptor in Staphylococcus aureus. , 2009, Biochimie.
[32] Yong Tae Kwon,et al. The N-end rule pathway. , 2012, Annual review of biochemistry.
[33] GCN1, a translational activator of GCN4 in Saccharomyces cerevisiae, is required for phosphorylation of eukaryotic translation initiation factor 2 by protein kinase GCN2. , 1993, Molecular and cellular biology.
[34] Yigong Shi,et al. Molecular mechanisms of caspase regulation during apoptosis , 2004, Nature Reviews Molecular Cell Biology.
[35] J. Seguin,et al. The nonribosomal synthesis of diketopiperazines in tRNA-dependent cyclodipeptide synthase pathways. , 2012, Natural product reports.
[36] C. Stathopoulos,et al. Two-codon T-box riboswitch binding two tRNAs , 2013, Proceedings of the National Academy of Sciences.
[37] A. Varshavsky,et al. In vivo half-life of a protein is a function of its amino-terminal residue. , 1986, Science.
[38] J. Yong,et al. tRNA binds to cytochrome c and inhibits caspase activation. , 2010, Molecular cell.
[39] M. Lecerf,et al. Aminoacyl-tRNA recognition by the FemXWv transferase for bacterial cell wall synthesis , 2009, Nucleic acids research.
[40] M. Bushell,et al. Translational regulation of gene expression during conditions of cell stress. , 2010, Molecular cell.
[41] D. Ron,et al. Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response , 2004, The Journal of cell biology.
[42] T. Henkin,et al. The T box mechanism: tRNA as a regulatory molecule , 2010, FEBS letters.
[43] W. Foster. Structural elements defining elongation factor Tu mediated suppression of codon ambiguity , 2006, Nucleic acids research.
[44] T. Henkin,et al. Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. , 2005, Journal of molecular biology.
[45] Dongho Lee,et al. Synergistic Antimicrobial Activity of Metabolites Produced by a Nonobligate Bacterial Predator , 2003, Antimicrobial Agents and Chemotherapy.
[46] A. Tomasz,et al. Characterization of tRNA-dependent Peptide Bond Formation by MurM in the Synthesis of Streptococcus pneumoniae Peptidoglycan* , 2008, Journal of Biological Chemistry.
[47] A. Peschel,et al. Broad‐spectrum antimicrobial peptide resistance by MprF‐mediated aminoacylation and flipping of phospholipids , 2011, Molecular microbiology.
[48] A. Hinnebusch,et al. Uncharged tRNA activates GCN2 by displacing the protein kinase moiety from a bipartite tRNA-binding domain. , 2000, Molecular cell.
[49] D. Haussecker,et al. Human tRNA-derived small RNAs in the global regulation of RNA silencing. , 2010, RNA.
[50] M. Marton,et al. Evidence that GCN1 and GCN20, translational regulators of GCN4, function on elongating ribosomes in activation of eIF2alpha kinase GCN2 , 1997, Molecular and cellular biology.
[51] S. Lautru,et al. The albonoursin gene Cluster of S noursei biosynthesis of diketopiperazine metabolites independent of nonribosomal peptide synthetases. , 2002, Chemistry & biology.
[52] C. Thompson,et al. Apoptosis in the pathogenesis and treatment of disease , 1995, Science.
[53] T. Nyström,et al. ppGpp: a global regulator in Escherichia coli. , 2005, Trends in microbiology.
[54] E. Stellwag,et al. Synthesis of guanosine tetra- and pentaphosphates by the obligately anaerobic bacterium Bacteroides thetaiotaomicron in response to molecular oxygen , 1979, Journal of bacteriology.
[55] J. Hoyt,et al. Molecular characterization and analysis of the biosynthetic gene cluster for the azoxy antibiotic valanimycin , 2002, Molecular microbiology.
[56] D. Spandidos,et al. RNA polymerase III transcription factor TFIIIC2 is overexpressed in ovarian tumors. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[57] A. Hinnebusch,et al. GCN1, a translational activator of GCN4 in Saccharomyces cerevisiae, is required for phosphorylation of eukaryotic translation initiation factor 2 by protein kinase GCN2 , 1993, Molecular and cellular biology.
[58] A. Vecchione,et al. Antifungal activity of diketopiperazines extracted from Alternaria alternata against Plasmopara viticola: an ultrastructural study. , 2007, Micron.
[59] Peter Csermely,et al. Response to Associate Editor , 2016 .
[60] Roberto Galizi,et al. Evidence of tRNA cleavage in apicomplexan parasites: Half-tRNAs as new potential regulatory molecules of Toxoplasma gondii and Plasmodium berghei. , 2013, Molecular and biochemical parasitology.
[61] S. Le,et al. Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid , 2009, Nucleic acids research.
[62] Howard Y. Chang,et al. Proteases for Cell Suicide: Functions and Regulation of Caspases , 2000, Microbiology and Molecular Biology Reviews.
[63] J. Charbonnier,et al. Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in non-ribosomal peptide synthesis , 2011, Nucleic acids research.
[64] C. Ehresmann,et al. tRNAs as primer of reverse transcriptases. , 1995, Biochimie.
[65] X. Wang. The expanding role of mitochondria in apoptosis. , 2001, Genes & development.
[66] N. B. Sepuri,et al. Perturbation of apoptosis upon binding of tRNA to the heme domain of cytochrome c , 2013, Apoptosis.
[67] Takuya Ueda,et al. Crystal structures of leucyl/phenylalanyl‐tRNA‐protein transferase and its complex with an aminoacyl‐tRNA analog , 2006, The EMBO journal.
[68] Noah Spies,et al. Tramp-mediated Rna Surveillance Prevents Spurious Entry of Rnas into the Schizosaccharomyces Pombe Sirna Pathway Nih Public Access Author Manuscript Gene-specific Srnas Methods Fission Yeast Strains and Plasmids Generation of Small Rna Libraries for 454 Deep Sequencing Supplementary Material Acknowl , 2022 .
[69] N. Kelleher,et al. tRNA-dependent peptide bond formation by the transferase PacB in biosynthesis of the pacidamycin group of pentapeptidyl nucleoside antibiotics , 2011, Proceedings of the National Academy of Sciences.
[70] M. Schapira,et al. Regulated translation initiation controls stress-induced gene expression in mammalian cells. , 2000, Molecular cell.
[71] P. Pérez,et al. Cell Wall Synthesis , 2004 .
[72] V. Dixit,et al. Death receptors: signaling and modulation. , 1998, Science.
[73] Konstantin G. Chernov,et al. The mRNA-binding Protein YB-1 (p50) Prevents Association of the Eukaryotic Initiation Factor eIF4G with mRNA and Inhibits Protein Synthesis at the Initiation Stage* , 2003, The Journal of Biological Chemistry.
[74] M. Ibba,et al. Broad Range Amino Acid Specificity of RNA-dependent Lipid Remodeling by Multiple Peptide Resistance Factors* , 2009, The Journal of Biological Chemistry.
[75] Michael Otto,et al. Staphylococcus aureus Resistance to Human Defensins and Evasion of Neutrophil Killing via the Novel Virulence Factor Mprf Is Based on Modification of Membrane Lipids with l-Lysine , 2001, The Journal of experimental medicine.
[76] D. Mengin-Lecreulx,et al. Synthesis of the l-Alanyl-l-alanine Cross-bridge of Enterococcus faecalis Peptidoglycan* , 2002, The Journal of Biological Chemistry.
[77] W. Haseltine,et al. Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes. , 1973, Proceedings of the National Academy of Sciences of the United States of America.
[78] R. Wek,et al. Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[79] G. Kaufmann. Anticodon nucleases. , 2000, Trends in biochemical sciences.
[80] R. Dziarski,et al. Peptidoglycan recognition proteins: pleiotropic sensors and effectors of antimicrobial defences , 2007, Nature Reviews Microbiology.
[81] M. Ibba,et al. Adaptation of the bacterial membrane to changing environments using aminoacylated phospholipids , 2009, Molecular microbiology.
[82] M. Ibba,et al. Roles of tRNA in cell wall biosynthesis , 2012, Wiley interdisciplinary reviews. RNA.
[83] M. Ibba,et al. LysPGS formation in Listeria monocytogenes has broad roles in maintaining membrane integrity beyond antimicrobial peptide resistance , 2014, Virulence.
[84] A. Corradin,et al. Small Noncoding RNAs in Cells Transformed by Human T-Cell Leukemia Virus Type 1: a Role for a tRNA Fragment as a Primer for Reverse Transcriptase , 2014, Journal of Virology.
[85] T. Nitoda,et al. Enzymatic Synthesis of Dehydro Cyclo(His–Phe)s, Analogs of the Potent Cell Cycle Inhibitor, Dehydrophenylahistin, and Their Inhibitory Activities toward Cell Division , 2004, Bioscience, biotechnology, and biochemistry.
[86] Y. Hayashi,et al. Antitumor activity of phenylahistin in vitro and in vivo. , 1999, Bioscience, biotechnology, and biochemistry.
[87] J. Rhee,et al. Aminoacyl-transferases and the N-end rule pathway of prokaryotic/eukaryotic specificity in a human pathogen. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[88] R. Garg,et al. Regulation of valanimycin biosynthesis in Streptomyces viridifaciens: characterization of VlmI as a Streptomyces antibiotic regulatory protein (SARP). , 2010, Microbiology.
[89] Thomas J. Begley,et al. A System of RNA Modifications and Biased Codon Use Controls Cellular Stress Response at the Level of Translation , 2014, Chemical research in toxicology.
[90] R. Gourse,et al. The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation. , 2013, Molecular cell.
[91] A. Sandelin,et al. Hidden layers of human small RNAs , 2008, BMC Genomics.
[92] N. Polacek,et al. Slicing tRNAs to boost functional ncRNA diversity , 2013, RNA biology.
[93] E. Phizicky,et al. Do all modifications benefit all tRNAs? , 2010, FEBS letters.
[94] Reena Rai,et al. Identification of mammalian arginyltransferases that modify a specific subset of protein substrates. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[95] Robert Blelloch,et al. Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. , 2008, Genes & development.
[96] F. Grosveld,et al. Regulation of Transcription , 2007 .
[97] A. Malhotra,et al. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). , 2009, Genes & development.
[98] I. Bellezza,et al. Cyclo(His-Pro) exerts anti-inflammatory effects by modulating NF-κB and Nrf2 signalling. , 2012, The international journal of biochemistry & cell biology.
[99] J. Tobias,et al. The N-end rule in bacteria. , 1991, Science.
[100] S. S. Ajay,et al. Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection. , 2013, Molecular therapy : the journal of the American Society of Gene Therapy.
[101] A. Hinnebusch,et al. Separate domains in GCN1 for binding protein kinase GCN2 and ribosomes are required for GCN2 activation in amino acid‐starved cells , 2000, The EMBO journal.
[102] Donghui Zhou,et al. Phosphorylation of eIF2 Directs ATF5 Translational Control in Response to Diverse Stress Conditions* , 2008, Journal of Biological Chemistry.
[103] M. Ibba,et al. Direction of aminoacylated transfer RNAs into antibiotic synthesis and peptidoglycan‐mediated antibiotic resistance , 2013, FEBS letters.
[104] R. Amouroux,et al. Cyclodipeptide synthases are a family of tRNA-dependent peptide bond-forming enzymes. , 2009, Nature chemical biology.
[105] H. Masaki,et al. The modes of action of colicins E5 and D, and related cytotoxic tRNases. , 2002, Biochimie.
[106] T. Pan,et al. Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells. , 2013, RNA.
[107] J. Wehland,et al. The MprF protein is required for lysinylation of phospholipids in listerial membranes and confers resistance to cationic antimicrobial peptides (CAMPs) on Listeria monocytogenes , 2006, Molecular microbiology.
[108] Luis Carrasco,et al. Gliotoxin: inhibitor of poliovirus RNA synthesis that blocks the viral RNA polymerase 3Dpol , 1992, Journal of virology.
[109] A. Tomasz,et al. Characterization of the murMN operon involved in the synthesis of branched peptidoglycan peptides in Streptococcus pneumoniae. , 2000, The Journal of biological chemistry.
[110] C. Prasad. Bioactive cyclic dipeptides , 1995, Peptides.
[111] Junying Yuan,et al. Caspases in apoptosis and beyond , 2008, Oncogene.
[112] A. Bachmair,et al. PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathway. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[113] Steven P Gygi,et al. Angiogenin-induced tRNA fragments inhibit translation initiation. , 2011, Molecular cell.
[114] M. Ibba,et al. RNA-dependent lipid remodeling by bacterial multiple peptide resistance factors , 2008, Proceedings of the National Academy of Sciences.
[115] Bernd Bukau,et al. The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies. , 2007, Trends in cell biology.
[116] N. Sonenberg,et al. The major mRNA‐associated protein YB‐1 is a potent 5′ cap‐dependent mRNA stabilizer , 2001, The EMBO journal.
[117] C. Walsh,et al. Identification of the biosynthetic gene cluster for the pacidamycin group of peptidyl nucleoside antibiotics , 2010, Proceedings of the National Academy of Sciences.
[118] David I. K. Martin,et al. 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction , 2013, BMC Genomics.
[119] Xiaodong Wang,et al. Induction of Apoptotic Program in Cell-Free Extracts: Requirement for dATP and Cytochrome c , 1996, Cell.
[120] T. Pan,et al. High levels of tRNA abundance and alteration of tRNA charging by bortezomib in multiple myeloma. , 2009, Biochemical and biophysical research communications.
[121] M. de Pedro,et al. Peptidoglycan structure and architecture. , 2008, FEMS microbiology reviews.
[122] A. Hinnebusch. Translational regulation of GCN4 and the general amino acid control of yeast. , 2005, Annual review of microbiology.
[123] Xiaolu Yang,et al. Regulation of cell death by transfer RNA. , 2013, Antioxidants & redox signaling.
[124] D. Spandidos,et al. Deregulation of RNA polymerase III transcription in cervical epithelium in response to high-risk human papillomavirus , 2005, Oncogene.
[125] F. Kawamura,et al. Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis , 2007, Molecular microbiology.
[126] F. Lipmann,et al. Identification of the synthesis of guanosine tetraphosphate (MS I) as insertion of a pyrophosphoryl group into the 3'-position in guanosine 5'-diphosphate. , 1973, Proceedings of the National Academy of Sciences of the United States of America.
[127] T. Pan,et al. Genome-wide Identification and Quantitative Analysis of Cleaved tRNA Fragments Induced by Cellular Stress* , 2012, The Journal of Biological Chemistry.
[128] O. Uhlenbeck,et al. The 51-63 base pair of tRNA confers specificity for binding by EF-Tu. , 2007, RNA.
[129] M. Ibba,et al. Lipid II-independent trans Editing of Mischarged tRNAs by the Penicillin Resistance Factor MurM* , 2013, The Journal of Biological Chemistry.
[130] M. Ibba,et al. tRNAs: Cellular barcodes for amino acids , 2010, FEBS letters.
[131] N. Polacek,et al. tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii , 2012, Archaea.
[132] Yuan Chang,et al. Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs , 2012, Nucleic acids research.
[133] A. Varshavsky. The N-end rule , 1992, Cell.
[134] H. Neumann,et al. MprF-mediated biosynthesis of lysylphosphatidylglycerol, an important determinant in staphylococcal defensin resistance. , 2004, FEMS microbiology letters.
[135] A. Hinnebusch,et al. Association of GCN1–GCN20 regulatory complex with the N‐terminus of eIF2α kinase GCN2 is required for GCN2 activation , 2000, The EMBO journal.
[136] J. Tobias,et al. The N-end rule in Escherichia coli: cloning and analysis of the leucyl, phenylalanyl-tRNA-protein transferase gene aat , 1993, Journal of bacteriology.
[137] P. Waring,et al. Cyclosporin A rescues thymocytes from apoptosis induced by very low concentrations of thapsigargin: effects on mitochondrial function. , 1996, Experimental cell research.
[138] J. Gallant,et al. Two Compounds implicated in the Function of the RC Gene of Escherichia coli , 1969, Nature.
[139] A. Hinnebusch,et al. The tRNA‐binding moiety in GCN2 contains a dimerization domain that interacts with the kinase domain and is required for tRNA binding and kinase activation , 2001, The EMBO journal.
[140] Alessandro Tossi,et al. In vitro assembly of a complete, pentaglycine interpeptide bridge containing cell wall precursor (lipid II‐Gly5) of Staphylococcus aureus , 2004, Molecular microbiology.
[141] Yi Tie,et al. Stress induces tRNA cleavage by angiogenin in mammalian cells , 2009, FEBS letters.
[142] T. Henkin,et al. The SMK box is a new SAM-binding RNA for translational regulation of SAM synthetase , 2006, Nature Structural &Molecular Biology.
[143] H. Kalbacher,et al. The Bacterial Defensin Resistance Protein MprF Consists of Separable Domains for Lipid Lysinylation and Antimicrobial Peptide Repulsion , 2009, PLoS pathogens.