An imaging workflow for characterizing phenotypical change in large histological mouse model datasets

[1]  Guy Marchal,et al.  Multimodality image registration by maximization of mutual information , 1997, IEEE Transactions on Medical Imaging.

[2]  Mark H. Ellisman,et al.  High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders , 2007, Neuroinformatics.

[3]  R. Weinberg,et al.  Effects of an Rb mutation in the mouse , 1992, Nature.

[4]  H. Kudo,et al.  Texture image segmentation by optimal Gabor filters , 1996, Proceedings of Third International Conference on Signal Processing (ICSP'96).

[5]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[6]  Robert T. Schultz,et al.  Registration of Cortical Anatomical Structures via Robust 3D Point Matching , 1999, IPMI.

[7]  Paul Suetens,et al.  Comparative evaluation of multiresolution optimization strategies for multimodality image registration by maximization of mutual information , 1999, Medical Image Anal..

[8]  Ruzena Bajcsy,et al.  Multiresolution elastic matching , 1989, Comput. Vis. Graph. Image Process..

[9]  Joel H. Saltz,et al.  Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies , 2007, IEEE Transactions on Medical Imaging.

[10]  Xiaobo Zhou,et al.  Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy , 2006, IEEE Transactions on Biomedical Engineering.

[11]  R. Menzel,et al.  Three‐dimensional average‐shape atlas of the honeybee brain and its applications , 2005, The Journal of comparative neurology.

[12]  Y. Istefanopulos,et al.  IEEE Engineering in Medicine and Biology Society , 2019, IEEE Transactions on Biomedical Engineering.

[13]  Markus Löffler,et al.  Three-dimensional reconstruction and quantification of cervical carcinoma invasion fronts from histological serial sections , 2005, IEEE Transactions on Medical Imaging.

[14]  Michael C. Ostrowski,et al.  Extra-embryonic function of Rb is essential for embryonic development and viability , 2003, Nature.

[15]  Yixin Chen,et al.  Machine Learning and Statistical Modeling Approaches to Image Retrieval , 2004, The Information Retrieval Series.

[16]  Raghu Machiraju,et al.  Image Segmentation with Tensor – Based Classification of N – Point Correlation Functions , 2006 .

[17]  Terry S. Yoo,et al.  Insight into Images: Principles and Practice for Segmentation, Registration, and Image Analysis , 2004 .

[18]  A. Bradley,et al.  Mice deficient for Rb are nonviable and show defects in neurogenesis and haematopoiesis , 1992, Nature.

[19]  Fred L. Bookstein,et al.  Principal Warps: Thin-Plate Splines and the Decomposition of Deformations , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[20]  Kun Huang,et al.  Fast Automatic Registration Algorithm for Large Microscopy Images , 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop.

[21]  A. Ardeshir Goshtasby,et al.  2-D and 3-D Image Registration: for Medical, Remote Sensing, and Industrial Applications , 2005 .

[22]  D. Hill,et al.  Non-rigid image registration: theory and practice. , 2004, The British journal of radiology.

[23]  D. Hill,et al.  Medical image registration , 2001, Physics in medicine and biology.

[24]  Tony Pan,et al.  Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data , 2007, Computing in Science & Engineering.

[25]  M J West,et al.  Stereological length estimation using spherical probes , 2002, Journal of microscopy.

[26]  Jitendra Malik,et al.  Contour Continuity in Region Based Image Segmentation , 1998, ECCV.

[27]  Colin Studholme,et al.  Automated 3-D registration of MR and CT images of the head , 1996, Medical Image Anal..

[28]  I. Arganda-Carreras,et al.  Automatic registration of serial mammary gland sections , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[29]  Rafael C. González,et al.  Digital image processing using MATLAB , 2006 .

[30]  H. J. G. Gundersen,et al.  The new stereological tools: Disector, fractionator, nucleator and point sampled intercepts and their use in pathological research and diagnosis , 1988, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.

[31]  Kun Huang,et al.  Multiscale Hybrid Linear Models for Lossy Image Representation , 2006, IEEE Transactions on Image Processing.

[32]  Kenneth Falconer,et al.  Fractal Geometry: Mathematical Foundations and Applications , 1990 .

[33]  Kun Huang,et al.  Virtual Mouse Placenta: Tissue Layer Segmentation , 2005, 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference.

[34]  Mark J. West,et al.  Stereological methods for estimating the total number of neurons and synapses: issues of precision and bias , 1999, Trends in Neurosciences.

[35]  R. Baldock,et al.  3D modelling, gene expression mapping and post-mapping image analysis in the developing human brain , 2005, Brain Research Bulletin.

[36]  Tony Pan,et al.  Rb is critical in a mammalian tissue stem cell population. , 2007, Genes & development.

[37]  Bill Hill,et al.  The Constrained Distance Transform : Interactive Atlas Registration With Large Deformations Through Constrained Distances , 2006 .

[38]  S. Torquato,et al.  Random Heterogeneous Materials: Microstructure and Macroscopic Properties , 2005 .

[39]  R. Kimmel,et al.  Geodesic Active Contours , 1995, Proceedings of IEEE International Conference on Computer Vision.

[40]  J. Maintz Retrospective registration of tomographic brain images , 1996 .

[41]  Tony F. Chan,et al.  Active contours without edges , 2001, IEEE Trans. Image Process..

[42]  Tony Pan,et al.  Registration and 3D visualization of large microscopy images , 2006, SPIE Medical Imaging.

[43]  Jitendra Malik,et al.  Color- and texture-based image segmentation using EM and its application to content-based image retrieval , 1998, Sixth International Conference on Computer Vision (IEEE Cat. No.98CH36271).

[44]  Paul Suetens,et al.  Medical image registration using mutual information , 2003, Proc. IEEE.

[45]  T. Rosol,et al.  Rb function in extraembryonic lineages suppresses apoptosis in the CNS of Rb-deficient mice , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[46]  David J. Foran,et al.  A prototype for unsupervised analysis of tissue microarrays for cancer research and diagnostics , 2004, IEEE Transactions on Information Technology in Biomedicine.

[47]  Gary E. Christensen,et al.  Consistent landmark and intensity-based image registration , 2002, IEEE Transactions on Medical Imaging.

[48]  H. J. G. GUNDERSEN,et al.  Some new, simple and efficient stereological methods and their use in pathological research and diagnosis , 1988, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.