LncRNA PSR Regulates Vascular Remodeling Through Encoding a Novel Protein Arteridin

Rationale: Vascular smooth muscle cells (VSMCs) phenotype switch from contractile to proliferative phenotype is a pathological hallmark in various cardiovascular diseases. Recently, a subset of long noncoding RNAs was identified to produce functional polypeptides. However, the functional impact and regulatory mechanisms of long noncoding RNAs in VSMCs phenotype switching remain to be fully elucidated. Objectives: To illustrate the biological function and mechanism of a VSMC-enriched long noncoding RNA and its encoded peptide in VSMC phenotype switching and vascular remodeling. Results: We identified a VSMC-enriched transcript encoded by a previously uncharacterized gene, which we called phenotype switching regulator (PSR), which was markedly upregulated during vascular remodeling. Although PSR was annotated as a long noncoding RNA, we demonstrated that the lncPSR (PSR transcript) also encoded a protein, which we named arteridin. In VSMCs, both arteridin and lncPSR were necessary and sufficient to induce phenotype switching. Mechanistically, arteridin and lncPSR regulate downstream genes by directly interacting with a transcription factor YBX1 (Y-box binding protein 1) and modulating its nuclear translocation and chromatin targeting. Intriguingly, the PSR transcription was also robustly induced by arteridin. More importantly, the loss of PSR gene or arteridin protein significantly attenuated the vascular remodeling induced by carotid arterial injury. In addition, VSMC-specific inhibition of lncPSR using adeno-associated virus attenuated Ang II (angiotensin II)–induced hypertensive vascular remodeling. Conclusions: PSR is a VSMC-enriched gene, and its transcript IncPSR and encoded protein (arteridin) coordinately regulate transcriptional reprogramming through a shared interacting partner, YBX1. This is a previously uncharacterized regulatory circuit in VSMC phenotype switching during vascular remodeling, with lncPSR/arteridin as potential therapeutic targets for the treatment of VSMC phenotype switching–related vascular remodeling.

[1]  R. Mecham,et al.  JAGGED1/NOTCH3 activation promotes aortic hypermuscularization and stenosis in elastin deficiency , 2022, The Journal of clinical investigation.

[2]  James E. Dahlman,et al.  Drug delivery systems for RNA therapeutics , 2022, Nature Reviews Genetics.

[3]  J. Rinn,et al.  From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo , 2021, Nature Reviews Genetics.

[4]  A. Vazdarjanova,et al.  CARMN Is an Evolutionarily Conserved Smooth Muscle Cell–Specific LncRNA That Maintains Contractile Phenotype by Binding Myocardin , 2021, Circulation.

[5]  Liangjing Wang,et al.  Micropeptide ASAP encoded by LINC00467 promotes colorectal cancer progression by directly modulating ATP synthase activity. , 2021, The Journal of clinical investigation.

[6]  Q. Cui,et al.  Nidogen-2 Maintains the Contractile Phenotype of Vascular Smooth Muscle Cells and Prevents Neointima Formation via Bridging Jagged1-Notch3 Signaling , 2021, Circulation.

[7]  Runsheng Chen,et al.  Deeply Mining a Universe of Peptides Encoded by Long Noncoding RNAs , 2021, Molecular & cellular proteomics : MCP.

[8]  Chan Chen,et al.  CD38 deficiency alleviates Ang II-induced vascular remodeling by inhibiting small extracellular vesicle-mediated vascular smooth muscle cell senescence in mice , 2021, Signal Transduction and Targeted Therapy.

[9]  L. Ouyang,et al.  ALKBH1-demethylated DNA N6-methyladenine modification triggers vascular calcification via osteogenic reprogramming in chronic kidney disease. , 2021, The Journal of clinical investigation.

[10]  A. Verkman,et al.  A small molecule inhibitor of the chloride channel TMEM16A blocks vascular smooth muscle contraction and lowers blood pressure in spontaneously hypertensive rats. , 2021, Kidney international.

[11]  M. Caulfield,et al.  Phospholemman Phosphorylation Regulates Vascular Tone, Blood Pressure, and Hypertension in Mice and Humans , 2020, Circulation.

[12]  A. Zaraisky,et al.  Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status. , 2020, Cell reports.

[13]  Q. Cui,et al.  VSMC-Specific Deletion of FAM3A Attenuated Ang II-Promoted Hypertension and Cardiovascular Hypertrophy , 2020, Circulation research.

[14]  G. Condorelli,et al.  miR-128-3p Is a Novel Regulator of Vascular Smooth Muscle Cell Phenotypic Switch and Vascular Diseases , 2020, Circulation research.

[15]  P. Leung,et al.  Long noncoding RNA HCP5 participates in premature ovarian insufficiency by transcriptionally regulating MSH5 and DNA damage repair via YB1 , 2020, Nucleic acids research.

[16]  H. Cunliffe,et al.  Dephosphorylation of YB-1 is Required for Nuclear Localisation During G2 Phase of the Cell Cycle , 2020, Cancers.

[17]  Yifeng Zhou,et al.  LncRNA-encoded polypeptide ASRPS inhibits triple-negative breast cancer angiogenesis , 2019, The Journal of experimental medicine.

[18]  R. Townsend,et al.  Large-Artery Stiffness in Health and Disease: JACC State-of-the-Art Review. , 2019, Journal of the American College of Cardiology.

[19]  Joshua W. Vincentz,et al.  Variation in a Left Ventricle-Specific Hand1 Enhancer Impairs GATA Transcription Factor Binding and Disrupts Conduction System Development and Function. , 2019, Circulation research.

[20]  Dali Li,et al.  NLRC5 inhibits neointima formation following vascular injury and directly interacts with PPARγ , 2019, Nature Communications.

[21]  Catherine L. Worth,et al.  The Translational Landscape of the Human Heart , 2019, Cell.

[22]  Y. Liao,et al.  Loss of Super-Enhancer-Regulated circRNA Nfix Induces Cardiac Regeneration After Myocardial Infarction in Adult Mice , 2019, Circulation.

[23]  Daniel S. Day,et al.  A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA , 2019, Genome research.

[24]  S. Apte,et al.  ADAMTS proteins in human disorders. , 2018, Matrix biology : journal of the International Society for Matrix Biology.

[25]  T. Le,et al.  Vascular Smooth Muscle Remodeling in Conductive and Resistance Arteries in Hypertension. , 2018, Arteriosclerosis, thrombosis, and vascular biology.

[26]  Craig R. Malloy,et al.  MOXI Is a Mitochondrial Micropeptide That Enhances Fatty Acid β-Oxidation , 2018, Cell reports.

[27]  Pooja Jadiya,et al.  Mitoregulin: A lncRNA-Encoded Microprotein that Supports Mitochondrial Supercomplexes and Respiratory Efficiency , 2018, Cell reports.

[28]  G. Condorelli,et al.  UHRF1 epigenetically orchestrates smooth muscle cell plasticity in arterial disease , 2018, The Journal of clinical investigation.

[29]  F. Hubé,et al.  Coding and Non-coding RNAs, the Frontier Has Never Been So Blurred , 2018, Front. Genet..

[30]  Mitsuo Kato,et al.  A Novel Angiotensin II–Induced Long Noncoding RNA Giver Regulates Oxidative Stress, Inflammation, and Proliferation in Vascular Smooth Muscle Cells , 2018, Circulation research.

[31]  C. Kanduri,et al.  PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers , 2018, Nature Communications.

[32]  Feng Yang,et al.  miR-22 Is a Novel Mediator of Vascular Smooth Muscle Cell Phenotypic Modulation and Neointima Formation , 2017, Circulation.

[33]  Hongliang Li,et al.  Interferon Regulatory Factor 4 Inhibits Neointima Formation by Engaging Krüppel-Like Factor 4 Signaling , 2017, Circulation.

[34]  S. Laurent,et al.  Vascular Smooth Muscle Cells and Arterial Stiffening: Relevance in Development, Aging, and Disease. , 2017, Physiological reviews.

[35]  C. L. Castellazzi,et al.  Musashi 1 regulates the timing and extent of meiotic mRNA translational activation by promoting the use of specific CPEs , 2017, Nature Structural &Molecular Biology.

[36]  Hui Li,et al.  Control of muscle formation by the fusogenic micropeptide myomixer , 2017, Science.

[37]  Antony K. Chen,et al.  Long non-coding RNA Linc-RAM enhances myogenic differentiation by interacting with MyoD , 2017, Nature Communications.

[38]  Akinobu Matsumoto,et al.  mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide , 2016, Nature.

[39]  M. Bennett,et al.  Vascular Smooth Muscle Cells in Atherosclerosis. , 2016, Circulation research.

[40]  Stephen C. Cannon,et al.  A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle , 2016, Science.

[41]  J. Lykke-Andersen,et al.  DDX6 Orchestrates Mammalian Progenitor Function through the mRNA Degradation and Translation Pathways. , 2015, Molecular cell.

[42]  Xuan Zhang,et al.  TMEM16A and Myocardin Form a Positive Feedback Loop That Is Disrupted by KLF5 During Ang II–Induced Vascular Remodeling , 2015, Hypertension.

[43]  Lisa Fish,et al.  Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement , 2015, Cell.

[44]  John M. Shelton,et al.  A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance , 2015, Cell.

[45]  Zhongkui Hong,et al.  Augmented Vascular Smooth Muscle Cell Stiffness and Adhesion When Hypertension Is Superimposed on Aging , 2015, Hypertension.

[46]  S. Dhanasekaran,et al.  The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.

[47]  M. Nugent,et al.  Extracellular matrix presentation modulates vascular smooth muscle cell mechanotransduction. , 2012, Matrix biology : journal of the International Society for Matrix Biology.

[48]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[49]  Guocheng Yuan,et al.  LincRNA-p21 Regulates Neointima Formation, Vascular Smooth Muscle Cell Proliferation, Apoptosis, and Atherosclerosis by Enhancing p53 Activity , 2014, Circulation.

[50]  V. Everts,et al.  Heterogeneity in Arterial Remodeling among Sublines of Spontaneously Hypertensive Rats , 2014, PloS one.

[51]  K. Kuroiwa,et al.  Mutual Regulation between Raf/MEK/ERK Signaling and Y-Box–Binding Protein-1 Promotes Prostate Cancer Progression , 2013, Clinical Cancer Research.

[52]  C. Leier,et al.  Y-box binding protein-1 implicated in translational control of fetal myocardial gene expression after cardiac transplant , 2012, Experimental biology and medicine.

[53]  E. Schiffrin Vascular Remodeling in Hypertension: Mechanisms and Treatment , 2012 .

[54]  Howard Y. Chang,et al.  Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. , 2011, Molecular cell.

[55]  K. Fujiu,et al.  Bone Marrow–Derived Cells Contribute to Vascular Inflammation but Do Not Differentiate Into Smooth Muscle Cell Lineages , 2009, Circulation.

[56]  P. Tam Faculty Opinions recommendation of miR-145 and miR-143 regulate smooth muscle cell fate and plasticity. , 2009 .

[57]  B. Zlokovic,et al.  Myocardin Is Sufficient for a Smooth Muscle–Like Contractile Phenotype , 2008, Arteriosclerosis, thrombosis, and vascular biology.

[58]  Regina M. Krohn,et al.  Y-Box Binding Protein-1 Controls CC Chemokine Ligand-5 (CCL5) Expression in Smooth Muscle Cells and Contributes to Neointima Formation in Atherosclerosis-Prone Mice , 2007, Circulation.

[59]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[60]  John A. Polikandriotis,et al.  Structure/function analysis of mouse Purbeta, a single-stranded DNA-binding repressor of vascular smooth muscle alpha-actin gene transcription. , 2003, The Journal of biological chemistry.

[61]  L. J. Maher,et al.  Altered Sensitivity to Single-strand-specific Reagents Associated with the Genomic Vascular Smooth Muscle α-Actin Promoter during Myofibroblast Differentiation* , 2000, The Journal of Biological Chemistry.

[62]  H. Iwao,et al.  [Vascular remodeling]. , 2000, Nihon rinsho. Japanese journal of clinical medicine.

[63]  Neil J McKenna,et al.  A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex , 1999, Cell.

[64]  P. K. Elder,et al.  The single-stranded DNA-binding proteins, Puralpha, Purbeta, and MSY1 specifically interact with an exon 3-derived mouse vascular smooth muscle alpha-actin messenger RNA sequence. , 1999, Journal of Biological Chemistry.

[65]  E. Olson,et al.  The A10 cell line: a model for neonatal, neointimal, or differentiated vascular smooth muscle cells? , 1997, Cardiovascular research.