Coordinated regulation of IFITM1, 2 and 3 genes by an IFN-responsive enhancer through long-range chromatin interactions

[1]  P. Ratcliffe,et al.  Capture‐C reveals preformed chromatin interactions between HIF‐binding sites and distant promoters , 2016, EMBO reports.

[2]  Yichi Xu,et al.  Long-Range Chromosome Interactions Mediated by Cohesin Shape Circadian Gene Expression , 2016, PLoS genetics.

[3]  Yoshihide Hayashizaki,et al.  Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases. , 2016, Trends in genetics : TIG.

[4]  T. Hijikata,et al.  Distal regulatory element of the STAT1 gene potentially mediates positive feedback control of STAT1 expression , 2016, Genes to cells : devoted to molecular & cellular mechanisms.

[5]  R. Wenger,et al.  Destruction of a distal hypoxia response element abolishes trans-activation of the PAG1 gene mediated by HIF-independent chromatin looping , 2015, Nucleic acids research.

[6]  Qiang Sun,et al.  Involvement of aberrant miR-139/Jun feedback loop in human gastric cancer. , 2015, Biochimica et Biophysica Acta.

[7]  A. Sher,et al.  Type I interferons in infectious disease , 2015, Nature Reviews Immunology.

[8]  Y. Kim,et al.  A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities , 2014, Nucleic acids research.

[9]  Nadav Ahituv,et al.  Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression , 2014, Cell.

[10]  M. Farzan,et al.  IFITM-Family Proteins: The Cell's First Line of Antiviral Defense. , 2014, Annual review of virology.

[11]  A. Dean,et al.  Enhancer function: mechanistic and genome-wide insights come together. , 2014, Molecular cell.

[12]  Wolfgang Huber,et al.  Enhancer loops appear stable during development and are associated with paused polymerase , 2014, Nature.

[13]  C. Rice,et al.  Interferon-stimulated genes: a complex web of host defenses. , 2014, Annual review of immunology.

[14]  P. Doherty,et al.  Early hypercytokinemia is associated with interferon-induced transmembrane protein-3 dysfunction and predictive of fatal H7N9 infection , 2013, Proceedings of the National Academy of Sciences.

[15]  D. Duboule,et al.  Topology of mammalian developmental enhancers and their regulatory landscapes , 2013, Nature.

[16]  Yan Li,et al.  A high-resolution map of three-dimensional chromatin interactome in human cells , 2013, Nature.

[17]  H. Goossens,et al.  IFITM3 and Susceptibility to Respiratory Viral Infections in the Community , 2013, The Journal of infectious diseases.

[18]  Jennifer E. Phillips-Cremins,et al.  Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment , 2013, Cell.

[19]  Dayan Wang,et al.  Interferon-induced transmembrane protein-3 genetic variant rs12252-C is associated with severe influenza in Chinese individuals , 2013, Nature Communications.

[20]  M. Diamond,et al.  The broad-spectrum antiviral functions of IFIT and IFITM proteins , 2012, Nature Reviews Immunology.

[21]  Michael R. Green,et al.  Characterization of enhancer function from genome-wide analyses. , 2012, Annual review of genomics and human genetics (Print).

[22]  J. Dekker,et al.  The long-range interaction landscape of gene promoters , 2012, Nature.

[23]  David Z. Chen,et al.  Architecture of the human regulatory network derived from ENCODE data , 2012, Nature.

[24]  Paul Kellam,et al.  IFITM3 restricts the morbidity and mortality associated with influenza , 2012, Nature.

[25]  Raymond K. Auerbach,et al.  Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation , 2012, Cell.

[26]  Wouter de Laat,et al.  A Regulatory Archipelago Controls Hox Genes Transcription in Digits , 2011, Cell.

[27]  Gaurav D. Gaiha,et al.  IFITM3 Inhibits Influenza A Virus Infection by Preventing Cytosolic Entry , 2011, PLoS pathogens.

[28]  A. Brass,et al.  Distinct Patterns of IFITM-Mediated Restriction of Filoviruses, SARS Coronavirus, and Influenza A Virus , 2011, PLoS pathogens.

[29]  David J. Adams,et al.  The IFITM Proteins Mediate Cellular Resistance to Influenza A H1N1 Virus, West Nile Virus, and Dengue Virus , 2009, Cell.

[30]  A. Visel,et al.  Genomic Views of Distant-Acting Enhancers , 2009, Nature.

[31]  D. Thanos,et al.  Virus Infection Induces NF-κB-Dependent Interchromosomal Associations Mediating Monoallelic IFN-β Gene Expression , 2008, Cell.

[32]  Suresh Cuddapah,et al.  Transcriptional enhancer factor 1 (TEF‐1/TEAD1) mediates activation of IFITM3 gene by BRGl , 2008, FEBS letters.

[33]  Allen D. Delaney,et al.  Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing , 2007, Nature Methods.

[34]  Jonghwan Kim,et al.  Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE). , 2007, Genome research.

[35]  L. Di,et al.  Active Chromatin Hub of the Mouse α-Globin Locus Forms in a Transcription Factory of Clustered Housekeeping Genes , 2006, Molecular and Cellular Biology.

[36]  Takuma Tsukahara,et al.  Differential gene induction by type I and type II interferons and their combination. , 2006, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[37]  Mark Gerstein,et al.  Global changes in STAT target selection and transcription regulation upon interferon treatments. , 2005, Genes & development.

[38]  P. Tam,et al.  IFITM/Mil/fragilis family proteins IFITM1 and IFITM3 play distinct roles in mouse primordial germ cell homing and repulsion. , 2005, Developmental cell.

[39]  L. Platanias Mechanisms of type-I- and type-II-interferon-mediated signalling , 2005, Nature Reviews Immunology.

[40]  Kairong Cui,et al.  The Chromatin-Remodeling BAF Complex Mediates Cellular Antiviral Activities by Promoter Priming , 2004, Molecular and Cellular Biology.

[41]  Frank Grosveld,et al.  Spatial organization of gene expression: the active chromatin hub , 2003, Chromosome Research.

[42]  R. Flavell,et al.  Regulation of the Th2 cytokine locus by a locus control region. , 2003, Immunity.

[43]  Erik Splinter,et al.  Looping and interaction between hypersensitive sites in the active beta-globin locus. , 2002, Molecular cell.

[44]  K. Zhao,et al.  Maximal Induction of a Subset of Interferon Target Genes Requires the Chromatin-Remodeling Activity of the BAF Complex , 2002, Molecular and Cellular Biology.

[45]  J. Dekker,et al.  Capturing Chromosome Conformation , 2002, Science.

[46]  T. Maniatis,et al.  Virus induction of human IFNβ gene expression requires the assembly of an enhanceosome , 1995, Cell.

[47]  G. Stark,et al.  Molecular analysis of a human interferon-inducible gene family. , 1991, European journal of biochemistry.

[48]  L. Reed,et al.  A SIMPLE METHOD OF ESTIMATING FIFTY PER CENT ENDPOINTS , 1938 .

[49]  Yuanyu Hu,et al.  Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-alpha-inducible genes. , 2002, Nature cell biology.