Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure.
暂无分享,去创建一个
Max Schobert | Lutz Wiehlmann | Susanne Häussler | Johannes Sikorski | Christine Rohde | Mathias Müsken | S. Häussler | M. Schobert | L. Wiehlmann | J. Sikorski | C. Rohde | Julia Garbe | Katherina Selezska | Marlon Kazmierczak | Mathias Müsken | J. Garbe | K. Selezska | Marlon Kazmierczak
[1] M. Tibayrenc,et al. Genetic Diversity of Pseudomonas aeruginosa Strains Isolated from Ventilated Patients with Nosocomial Pneumonia, Cancer Patients with Bacteremia, and Environmental Water , 2001, Infection and Immunity.
[2] T. Pitt,et al. Identification and characterization of transmissible Pseudomonas aeruginosa strains in cystic fibrosis patients in England and Wales. , 2004, Journal of medical microbiology.
[3] Samuel I. Miller,et al. Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients , 2007, Molecular microbiology.
[4] R. Kolter,et al. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development , 1998, Molecular microbiology.
[5] H. A. Orr,et al. The genetic theory of adaptation: a brief history , 2005, Nature Reviews Genetics.
[6] Christopher M Thomas,et al. Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria , 2005, Nature Reviews Microbiology.
[7] B. Lânyi. Serological properties of Pseudomonas aeruginosa. I. Group-specific somatic antigens. , 1966, Acta microbiologica Academiae Scientiarum Hungaricae.
[8] J. Young,et al. Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumes , 2004, Molecular ecology.
[9] J. Euzéby. List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. , 1997, International journal of systematic bacteriology.
[10] John W. Taylor,et al. Geographic Barriers Isolate Endemic Populations of Hyperthermophilic Archaea , 2003, Science.
[11] K. Holsinger. The neutral theory of molecular evolution , 2004 .
[12] Alexis Criscuolo,et al. Bacteriophages can treat and prevent Pseudomonas aeruginosa lung infections. , 2010, The Journal of infectious diseases.
[13] B. Yuval,et al. Gut bacterial communities in the Mediterranean fruit fly (Ceratitis capitata) and their impact on host longevity. , 2008, Journal of insect physiology.
[14] Alexander Sulakvelidze,et al. Bacteriophages: Biology and Applications , 2007 .
[15] R. Amann,et al. The species concept for prokaryotes. , 2013, FEMS microbiology reviews.
[16] D. Bigley,et al. Distribution of Pseudomonas aeruginosa in a riverine ecosystem , 1983, Applied and environmental microbiology.
[17] M. Rohde,et al. Sequencing and Characterization of Pseudomonas aeruginosa phage JG004 , 2011, BMC Microbiology.
[18] Bruno Pot,et al. Pseudomonas aeruginosa Population Structure Revisited , 2009, PloS one.
[19] N. Koedam,et al. Effect of genotype and root colonization in biological control of fusarium wilts in pigeonpea and chickpea by Pseudomonas aeruginosa PNA1. , 2003, Canadian journal of microbiology.
[20] R. Hancock,et al. Swarming of Pseudomonas aeruginosa Is Controlled by a Broad Spectrum of Transcriptional Regulators, Including MetR , 2009, Journal of bacteriology.
[21] C. Fraser,et al. The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity , 2009, Science.
[22] D. Falush,et al. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[23] M. Weinbauer. Ecology of prokaryotic viruses. , 2004, FEMS microbiology reviews.
[24] T. Ohta. Slightly Deleterious Mutant Substitutions in Evolution , 1973, Nature.
[25] F. Lépine,et al. Production of rhamnolipids by Pseudomonas aeruginosa , 2005, Applied Microbiology and Biotechnology.
[26] David A. D'Argenio,et al. Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[27] C. H. Drake,et al. A STUDY OF THE INCIDENCE OF PSEUDOMONAS AERUGINOSA FROM VARIOUS NATURAL SOURCES , 1952, Journal of bacteriology.
[28] G. Geesey,et al. Regulation of the alginate biosynthesis gene algC in Pseudomonas aeruginosa during biofilm development in continuous culture , 1995, Applied and environmental microbiology.
[29] R. Hancock,et al. Outer membrane proteins of Pseudomonas aeruginosa serotype strains. , 1982, The Journal of infectious diseases.
[30] W. Doolittle,et al. On the origin of prokaryotic species. , 2009, Genome research.
[31] H. Matsumoto,et al. Survey of Heat-Stable, Major Somatic Antigens of Pseudomonas aeruginosa† , 1983 .
[32] B. Tümmler,et al. Sequence Diversity of Pseudomonas aeruginosa: Impact on Population Structure and Genome Evolution , 2000, Journal of bacteriology.
[33] R. Colwell. Polyphasic Taxonomy of the Genus Vibrio: Numerical Taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and Related Vibrio Species , 1970, Journal of bacteriology.
[34] R. Schoental. The Nature of the Antibacterial Agents Present in Pseudomonas pyocyanea Cultures , 1941 .
[35] T. Hothorn,et al. A Robust Procedure for Comparing Multiple Means under Heteroscedasticity in Unbalanced Designs , 2010, PloS one.
[36] D. Frank,et al. Effect of Pseudomonas aeruginosa elastase, alkaline protease, and exotoxin A on corneal proteinases and proteins. , 1993, Investigative ophthalmology & visual science.
[37] B. Tümmler,et al. Gradient of genomic diversity in the Pseudomonas aeruginosa chromosome , 1995, Molecular microbiology.
[38] R. P. Ross,et al. Bacteriophage and their lysins for elimination of infectious bacteria. , 2009, FEMS microbiology reviews.
[39] D. M. Ward. A natural species concept for prokaryotes. , 1998, Current opinion in microbiology.
[40] D. Dykhuizen,et al. Clonal divergence in Escherichia coli as a result of recombination, not mutation. , 1994, Science.
[41] Y Comeau,et al. Initiation of Biofilm Formation byPseudomonas aeruginosa 57RP Correlates with Emergence of Hyperpiliated and Highly Adherent Phenotypic Variants Deficient in Swimming, Swarming, and Twitching Motilities , 2001, Journal of bacteriology.
[42] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[43] Pradeep K. Singh,et al. Cystic Fibrosis Sputum Supports Growth and Cues Key Aspects of Pseudomonas aeruginosa Physiology , 2005, Journal of bacteriology.
[44] Laura E. Green,et al. The role of ecological theory in microbial ecology , 2007, Nature Reviews Microbiology.
[45] D. Obreht,et al. Isolation of Pseudomonas aeruginosa Specific Phages with Broad Activity Spectra , 2009, Current Microbiology.
[46] M. Akçay,et al. Prevalence of metallo-beta-lactamase among Pseudomonas aeruginosa and Acinetobacter baumannii isolated from burn wounds and in vitro activities of antibiotic combinations against these isolates. , 2005, Burns : journal of the International Society for Burn Injuries.
[47] R. D. Stefano,et al. Infections caused by Pseudomonas aeruginosa: Relatively frequent isolation of serogroup 12 from clinical specimens , 1985, European Journal of Epidemiology.
[48] P. Flume,et al. Update in cystic fibrosis 2009. , 2010, American journal of respiratory and critical care medicine.
[49] N. Høiby,et al. Characterization of paired mucoid/non-mucoid Pseudomonas aeruginosa isolates from Danish cystic fibrosis patients: antibiotic resistance, beta-lactamase activity and RiboPrinting. , 2001, The Journal of antimicrobial chemotherapy.
[50] M. Lynch. The frailty of adaptive hypotheses for the origins of organismal complexity , 2007, Proceedings of the National Academy of Sciences.
[51] E. Verder,et al. A Proposed Antigenic Schemia for the Identification of Strains of Pseudomonas Aeruginosa , 1961 .
[52] R. Fridman,et al. In vivo bacterial protease production during Pseudomonas aeruginosa corneal infection. , 1995, Investigative ophthalmology & visual science.
[53] Anne-Brit Kolstø,et al. Complete Sequence Analysis of Novel Plasmids from Emetic and Periodontal Bacillus cereus Isolates Reveals a Common Evolutionary History among the B. cereus-Group Plasmids, Including Bacillus anthracis pXO1 , 2006, Journal of bacteriology.
[54] G. Volckaert,et al. Survey of Pseudomonas aeruginosa and its phages: de novo peptide sequencing as a novel tool to assess the diversity of worldwide collected viruses. , 2009, Environmental microbiology.
[55] J. Wimpenny,et al. A unifying hypothesis for the structure of microbial biofilms based on cellular automaton models , 1997 .
[56] I. Fridovich,et al. Mechanism of the antibiotic action pyocyanine , 1980, Journal of bacteriology.
[57] M. Maiden. Multilocus sequence typing of bacteria. , 2006, Annual review of microbiology.
[58] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[59] A. Vanderkelen,et al. Pseudomonas aeruginosa displays an epidemic population structure. , 2002, Environmental microbiology.
[60] E. Rubinstein,et al. Pseudomonas aeruginosa meningitis treated with an azlocillin combination , 2005, Infection.
[61] Lawrence G. Wayne,et al. International Committee on Systematic Bacteriology: Announcement of the Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics , 1988 .
[62] O. Sandvik. Serological comparison between strains of Pseudomonas aeruginosa from human and animal sources. , 2009, Acta pathologica et microbiologica Scandinavica.
[63] J. Rozé,et al. Contamination of a milk bank pasteuriser causing a Pseudomonas aeruginosa outbreak in a neonatal intensive care unit , 2003, Archives of Disease in Childhood: Fetal and Neonatal Edition.
[64] A. Tripathi,et al. Survival and chromate reducing ability of Pseudomonas aeruginosa in industrial effluents , 1999, Letters in applied microbiology.
[65] A. Hauser,et al. Relative Contributions of Pseudomonas aeruginosa ExoU, ExoS, and ExoT to Virulence in the Lung , 2004, Infection and Immunity.
[66] J Mallet,et al. A species definition for the modern synthesis. , 1995, Trends in ecology & evolution.
[67] M. Lynch. Streamlining and simplification of microbial genome architecture. , 2006, Annual review of microbiology.
[68] T. Pitt,et al. Multiresistant serotype O 12 Pseudomonas aeruginosa: evidence for a common strain in Europe , 1989, Epidemiology and Infection.
[69] M. G. Lorenz,et al. The potential for intraspecific horizontal gene exchange by natural genetic transformation: sexual isolation among genomovars of Pseudomonas stutzeri. , 2000, Microbiology.
[70] R. Hancock,et al. Regulation of virulence and antibiotic resistance by two-component regulatory systems in Pseudomonas aeruginosa. , 2009, FEMS microbiology reviews.
[71] A. Hauser,et al. Prevalence of type III secretion genes in clinical and environmental isolates of Pseudomonas aeruginosa. , 2001, Microbiology.
[72] B. Wretlind,et al. Assessment of protease (elastase) as a Pseudomonas aeruginosa virulence factor in experimental mouse burn infection , 1979, Infection and immunity.
[73] A. Sahin,et al. Supplemental Table 1 , 2010 .
[74] Pha Sneath,et al. International code of nomenclature of bacteria (1990 revision). , 1992 .
[75] Costerton Jw,et al. Bacterial resistance to antibiotics: the role of biofilms. , 1991 .
[76] E. Verder,et al. A proposed antigenic schema for the identification of strains of Pseudomonas aeruginosa. , 1961, Journal of Infectious Diseases.
[77] C. Ahlén,et al. Identification of infectious Pseudomonas aeruginosa strains in an occupational saturation diving environment. , 1998, Occupational and environmental medicine.
[78] K. Konstantinidis,et al. Genomic insights that advance the species definition for prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[79] F. Rojo,et al. Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin. , 1999, Environmental microbiology.
[80] J. Huxley. Evolution: The Modern Synthesis , 1943 .
[81] G. Volckaert,et al. Quality-Controlled Small-Scale Production of a Well-Defined Bacteriophage Cocktail for Use in Human Clinical Trials , 2009, PloS one.
[82] N. Høiby,et al. Genetic adaptation of Pseudomonas aeruginosa during chronic lung infection of patients with cystic fibrosis: strong and weak mutators with heterogeneous genetic backgrounds emerge in mucA and/or lasR mutants. , 2010, Microbiology.
[83] P. de Vos,et al. Polyphasic Taxonomy , a Consensus Approach to Bacterial Systematics , 1996 .
[84] J. Musarrat,et al. Characterization of a New Pseudomonas aeruginosa Strain NJ-15 as a Potential Biocontrol Agent , 2003, Current Microbiology.
[85] F J Ayala,et al. Tempo and mode in evolution. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[86] R. F. Smith,et al. Epidemiological tracing of Pseudomonas aeruginosa: antibiogram and serotyping. , 1974, Applied microbiology.
[87] G. Taylor,et al. Measurement of Pseudomonas aeruginosa phenazine pigments in sputum and assessment of their contribution to sputum sol toxicity for respiratory epithelium , 1988, Infection and immunity.
[88] J. Heesemann,et al. Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosis. , 2007, The Journal of infectious diseases.
[89] J. Goldberg,et al. The role of the CFTR in susceptibility to Pseudomonas aeruginosa infections in cystic fibrosis. , 2000, Trends in microbiology.
[90] W. Ludwig,et al. Notes on the characterization of prokaryote strains for taxonomic purposes. , 2010, International journal of systematic and evolutionary microbiology.
[91] Qing Yang,et al. Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[92] W. Hanage,et al. eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data , 2004, Journal of bacteriology.
[93] W. Doolittle,et al. Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid. , 2009, International journal of systematic and evolutionary microbiology.
[94] P. Knežević,et al. A colorimetric microtiter plate method for assessment of phage effect on Pseudomonas aeruginosa biofilm. , 2008, Journal of microbiological methods.
[95] S. Suter. The role of bacterial proteases in the pathogenesis of cystic fibrosis. , 1994, American journal of respiratory and critical care medicine.
[96] E. Mayr,et al. The objects of selection. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[97] T. Hayashi,et al. Identification of the lipopolysaccharide core region as the receptor site for a cytotoxin-converting phage, phi CTX, of Pseudomonas aeruginosa , 1994, Journal of bacteriology.
[98] Chitkara Yk,et al. Endogenous and exogenous infection with Pseudomonas aeruginosa in a burns unit. , 1981 .
[99] C. Fraser,et al. Recombination and the Nature of Bacterial Speciation , 2007, Science.
[100] D. Hartl,et al. Principles of population genetics , 1981 .
[101] R. Kolter,et al. Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili , 1998, Molecular microbiology.
[102] F. Cohan,et al. A Systematics for Discovering the Fundamental Units of Bacterial Diversity , 2007, Current Biology.
[103] D. Jahn,et al. Characterization of JG024, a pseudomonas aeruginosa PB1-like broad host range phage under simulated infection conditions , 2010, BMC Microbiology.
[104] T. Montie,et al. Avirulence and altered physiological properties of cystic fibrosis strains of Pseudomonas aeruginosa , 1985, Infection and immunity.
[105] A. Prince,et al. Pathogen-host interactions in Pseudomonas aeruginosa pneumonia. , 2005, American journal of respiratory and critical care medicine.
[106] C. Fraser,et al. The impact of homologous recombination on the generation of diversity in bacteria. , 2006, Journal of theoretical biology.
[107] E. Koonin. Darwinian evolution in the light of genomics , 2008, Nucleic acids research.
[108] R. Kolter,et al. Biofilm formation as microbial development. , 2000, Annual review of microbiology.
[109] S. Eykyn,et al. Hospital-acquired, native valve endocarditis caused by Pseudomonas aeruginosa. , 2002, The Journal of infection.
[110] M. Thomassen,et al. Flagella and motility alterations in Pseudomonas aeruginosa strains from patients with cystic fibrosis: relationship to patient clinical condition , 1985, Infection and immunity.
[111] P. Gérôme,et al. Study ofPseudomonas aeruginosa serotype O12 isolates with a common antibiotic susceptibility pattern , 1996, European Journal of Clinical Microbiology and Infectious Diseases.
[112] Christophe Fraser,et al. Modelling bacterial speciation , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[113] F. Cohan. Bacterial species and speciation. , 2001, Systematic biology.
[114] H. Yamada,et al. Production of antibody against Pseudomonas aeruginosa and its serological typing. , 1971, The Japanese journal of experimental medicine.
[115] J. M. Smith,et al. Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. , 2000, Genetics.
[116] S. Kjelleberg,et al. Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae , 2008, The ISME Journal.
[117] R. Hancock,et al. Pseudomonas aeruginosa isolates from patients with cystic fibrosis: a class of serum-sensitive, nontypable strains deficient in lipopolysaccharide O side chains , 1983, Infection and immunity.
[118] M. Zucca,et al. Phenotypic and genotypic characterization of Pseudomonas aeruginosa from cystic fibrosis patients , 2008, European Journal of Clinical Microbiology & Infectious Diseases.
[119] Laurent Excoffier,et al. Arlequin (version 3.0): An integrated software package for population genetics data analysis , 2005, Evolutionary bioinformatics online.
[120] M. Galván,et al. Pseudomonas aeruginosa as an indicator of health risk in water for human consumption. , 2001, Water science and technology : a journal of the International Association on Water Pollution Research.
[121] D. M. Ward,et al. Genomics, environmental genomics and the issue of microbial species , 2008, Heredity.
[122] H. Devlin,et al. New Immunotype Schema for Pseudomonas aeruginosa Based on Protective Antigens , 1969, Journal of bacteriology.
[123] D. Hassett,et al. Response of Pseudomonas aeruginosa to pyocyanin: mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase , 1992, Infection and immunity.
[124] S. Roy,et al. Effect of Mg(2+) ion in protein secretion by magnesium-resistant strains of Pseudomonas aeruginosa and Vibrio parahaemolyticus isolated from the coastal water of Haldia port. , 2000, FEMS microbiology letters.
[125] Lucas J Stal,et al. Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP , 2006, BMC Ecology.
[126] I. Habs. [Research on O-antigens of Pseudomonas aeruginosa]. , 1957, Zeitschrift fur Hygiene und Infektionskrankheiten; medizinische Mikrobiologie, Immunologie und Virologie.
[127] F. Rojo,et al. Structure of Pseudomonas aeruginosa Populations Analyzed by Single Nucleotide Polymorphism and Pulsed-Field Gel Electrophoresis Genotyping , 2004, Journal of bacteriology.
[128] M. Bale,et al. Identification of Pseudomonas aeruginosa by pyocyanin production on Tech agar , 1981, Journal of clinical microbiology.
[129] S. Rapuano,et al. Survival and growth of Pseudomonas aeruginosa in natural mineral water: a 5-year study. , 1999, International journal of food microbiology.
[130] W. Whitman,et al. Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[131] T. Dobzhansky. Genetics and the Origin of Species , 1937 .
[132] J. Majewski,et al. Sexual isolation in bacteria. , 2001, FEMS microbiology letters.
[133] Rachel J. Whitaker. Allopatric origins of microbial species , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[134] James T Staley,et al. The bacterial species dilemma and the genomic–phylogenetic species concept , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[135] N. Moran,et al. The process of genome shrinkage in the obligate symbiont Buchnera aphidicola , 2001, Genome Biology.
[136] J. Bull,et al. Population and evolutionary dynamics of phage therapy , 2004, Nature Reviews Microbiology.
[137] S. Cryz,et al. Isolation and characterization of Pseudomonas aeruginosa PAO mutant that produces altered elastase , 1980, Journal of bacteriology.
[138] M. Roberts,et al. The effect of DNA sequence divergence on sexual isolation in Bacillus. , 1993, Genetics.
[139] D. Dubnau,et al. DNA uptake in bacteria. , 1999, Annual review of microbiology.
[140] P. Sneath,et al. Approved lists of bacterial names. , 1980, The Medical journal of Australia.
[141] D. Garnica,et al. Comparison of virulence between clinical and environmental Pseudomonas aeruginosa isolates. , 2006, International microbiology : the official journal of the Spanish Society for Microbiology.
[142] D. Krizanc,et al. Ecology of Speciation in the Genus Bacillus , 2010, Applied and Environmental Microbiology.
[143] C. Gerba,et al. Risk assessment of Pseudomonas aeruginosa in water. , 2009, Reviews of environmental contamination and toxicology.
[144] K. Poole,et al. Multidrug efflux pumps and antimicrobial resistance in Pseudomonas aeruginosa and related organisms. , 2001, Journal of molecular microbiology and biotechnology.
[145] J. A. Hobden,et al. Pseudomonas aeruginosa Keratitis in Knockout Mice Deficient in Intercellular Adhesion Molecule 1 , 1999, Infection and Immunity.
[146] R. Sander,et al. Otitis externa: a practical guide to treatment and prevention. , 2001, American family physician.
[147] Stefan Wuertz,et al. Toward Automated Analysis of Biofilm Architecture: Bias Caused by Extraneous Confocal Laser Scanning Microscopy Images , 2007, Applied and Environmental Microbiology.
[148] B. Spratt,et al. Bacterial population genetics, evolution and epidemiology. , 1999, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[149] Howard Ochman,et al. The consequences of genetic drift for bacterial genome complexity. , 2009, Genome research.
[150] M. Favero,et al. Bacteriological evaluation of an ultra-pure water-distilling system. , 1975, Applied microbiology.
[151] F. Cohan. What are bacterial species? , 2002, Annual review of microbiology.
[152] E. Nevo,et al. Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[153] F. Cohan,et al. The Origins of Ecological Diversity in Prokaryotes , 2008, Current Biology.
[154] B. Spratt,et al. Recombination and the population structures of bacterial pathogens. , 2001, Annual review of microbiology.
[155] H. Grundmann,et al. Development of a Multilocus Sequence Typing Scheme for the Opportunistic Pathogen Pseudomonas aeruginosa , 2004, Journal of Clinical Microbiology.
[156] J. Costerton,et al. Bacterial resistance to antibiotics: the role of biofilms. , 1991, Progress in drug research. Fortschritte der Arzneimittelforschung. Progres des recherches pharmaceutiques.
[157] R E Sjogren,et al. Bacterial survival in a dilute environment , 1981, Applied and environmental microbiology.
[158] J. Elion,et al. The absence of correlation between allozyme and rrn RFLP analysis indicates a high gene flow rate within human clinical Pseudomonas aeruginosa isolates. , 1993, FEMS microbiology letters.
[159] M. Achtman. Microevolution and epidemic spread of serogroup A Neisseria meningitidis--a review. , 1997, Gene.
[160] M. Hentzer,et al. Dynamics and Spatial Distribution of β-Lactamase Expression in Pseudomonas aeruginosa Biofilms , 2004, Antimicrobial Agents and Chemotherapy.
[161] D. L. Le Couteur,et al. Pseudomonas aeruginosa and the hyperlipidaemia of sepsis. , 2009, Pathology.
[162] Tetsuya Matsumoto,et al. Efficacy of Bacteriophage Therapy against Gut-Derived Sepsis Caused by Pseudomonas aeruginosa in Mice , 2006, Antimicrobial Agents and Chemotherapy.
[163] Roberto Kolter,et al. Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis , 1998, Molecular microbiology.
[164] B. Iglewski,et al. Isolation and characterization of alkaline protease-deficient mutants of Pseudomonas aeruginosa in vitro and in a mouse eye model , 1984, Infection and immunity.
[165] J. Fralick,et al. Phage Therapy of Pseudomonas aeruginosa Infection in a Mouse Burn Wound Model , 2007, Antimicrobial Agents and Chemotherapy.
[166] C. Pedrós-Alió,et al. Dissolved Primary Production and the Strength of Phytoplankton– Bacterioplankton Coupling in Contrasting Marine Regions , 2002, Microbial Ecology.
[167] D. M. Ward,et al. Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics , 2008, Proceedings of the National Academy of Sciences.
[168] L. Eberl,et al. Quorum sensing : a novel target for the treatment of biofilm infections. , 2003, BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy.
[169] U. Romling,et al. Proteome analysis reveals adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung environment , 2005, Proteomics.
[170] A. Kornberg,et al. Inorganic polyphosphate is needed for swimming, swarming, and twitching motilities of Pseudomonas aeruginosa. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[171] Sarah P Preheim,et al. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[172] B. Iglewski,et al. The contribution of exoproducts to virulence of Pseudomonas aeruginosa. , 1986, Canadian journal of microbiology.
[173] T. Beveridge,et al. Pseudomonas aeruginosa PAO1 ceases to express serotype-specific lipopolysaccharide at 45 degrees C , 1996, Journal of bacteriology.
[174] A. Vanderkelen,et al. Direct detection and identification of Pseudomonas aeruginosa in clinical samples such as skin biopsy specimens and expectorations by multiplex PCR based on two outer membrane lipoprotein genes, oprI and oprL , 1997, Journal of clinical microbiology.
[175] W. Doolittle,et al. Genomics and the bacterial species problem , 2006, Genome Biology.
[176] A. Baltch,et al. Pseudomonas aeruginosa : infections and treatment , 1994 .
[177] M. Weinbauer,et al. Assessing Niche Separation among Coexisting Limnohabitans Strains through Interactions with a Competitor, Viruses, and a Bacterivore , 2009, Applied and Environmental Microbiology.
[178] J. Mattick,et al. Differential Regulation of Twitching Motility and Elastase Production by Vfr in Pseudomonas aeruginosa , 2002, Journal of bacteriology.
[179] J. Claverys,et al. Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination‐mediated genetic plasticity? , 2000, Molecular microbiology.
[180] L. F. Muscarella. Contribution of Tap Water and Environmental Surfaces to Nosocomial Transmission of Antibiotic-Resistant Pseudomonas aeruginosa , 2004, Infection Control & Hospital Epidemiology.
[181] N. Baker. Role of exotoxin A and proteases of Pseudomonas aeruginosa in respiratory tract infections. , 1982, Canadian journal of microbiology.
[182] Frederick M. Ausubel,et al. Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation , 2002, Nature.
[183] F. Taddei,et al. Genetic barriers among bacteria. , 1996, Trends in microbiology.
[184] K. Kogure,et al. Isolation of Pseudomonas aeruginosa from Open Ocean and Comparison with Freshwater, Clinical, and Animal Isolates , 2007, Microbial Ecology.
[185] B. Tümmler,et al. The crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, defines a third class of sulfatases , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[186] J. Philiptschenko. Variabilität und Variation , 1927 .
[187] M. Favero,et al. Pseudomonas aeruginosa: Growth in Distilled Water from Hospitals , 1971, Science.
[188] Y. Chen,et al. Presence of the exoU Gene of Pseudomonas aeruginosa Is Correlated with Cytotoxicity in MDCK Cells but Not with Colonization in BALB/c Mice , 2006, Journal of Clinical Microbiology.
[189] N. Høiby,et al. An epidemic spread of multiresistant Pseudomonas aeruginosa in a cystic fibrosis centre. , 1986, The Journal of antimicrobial chemotherapy.
[190] A. Paccanaro,et al. Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles , 2006, BMC Genomics.
[191] S. Molin,et al. Heterogeneity of Biofilms Formed by Nonmucoid Pseudomonas aeruginosa Isolates from Patients with Cystic Fibrosis , 2005, Journal of Clinical Microbiology.
[192] A. Chakrabarty,et al. Exopolysaccharide production in biofilms: substratum activation of alginate gene expression by Pseudomonas aeruginosa , 1993, Applied and environmental microbiology.
[193] S. Lory,et al. Identification of DNA markers for a transmissible Pseudomonas aeruginosa cystic fibrosis strain. , 2005, American journal of respiratory cell and molecular biology.
[194] C. Fraser,et al. Sequences, sequence clusters and bacterial species , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[195] L. Eberl,et al. Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection , 2008, Molecular microbiology.
[196] C. Suttle. Marine viruses — major players in the global ecosystem , 2007, Nature Reviews Microbiology.
[197] S. Baron,et al. Antibiotic action of pyocyanin , 1981, Antimicrobial Agents and Chemotherapy.
[198] B. Rehm,et al. The role of polyhydroxyalkanoate biosynthesis by Pseudomonas aeruginosa in rhamnolipid and alginate production as well as stress tolerance and biofilm formation. , 2004, Microbiology.
[199] W. Doolittle,et al. Eradicating typological thinking in prokaryotic systematics and evolution. , 2009, Cold Spring Harbor symposia on quantitative biology.
[200] M. Hurn,et al. MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi , 2008, Proceedings of the National Academy of Sciences.
[201] J. Costerton,et al. The involvement of cell-to-cell signals in the development of a bacterial biofilm. , 1998, Science.
[202] R. Rosselló-Móra,et al. Shifting the genomic gold standard for the prokaryotic species definition , 2009, Proceedings of the National Academy of Sciences.
[203] C. Suttle. Viruses in the sea , 2005, Nature.
[204] Anastasia Papakonstantinopoulou,et al. Transcriptome Analysis of Pseudomonas aeruginosa Growth: Comparison of Gene Expression in Planktonic Cultures and Developing and Mature Biofilms , 2005, Journal of bacteriology.
[205] I. Sutherland,et al. Biofilm susceptibility to bacteriophage attack: the role of phage-borne polysaccharide depolymerase. , 1998, Microbiology.
[206] J. da Silva,et al. Comparison of the exoS Gene and Protein Expression in Soil and Clinical Isolates of Pseudomonas aeruginosa , 2001, Infection and Immunity.
[207] B. Tress,et al. Multiple doses of contrast medium from a single container: bacteriological studies. , 1994, Australasian radiology.
[208] T. Pitt,et al. Polyagglutinating and non-typable strains of Pseudomonas aeruginosa in cystic fibrosis. , 1986, Journal of medical microbiology.
[209] D. Ohman,et al. Secreted LasA of Pseudomonas aeruginosa is a staphylolytic protease. , 1993, The Journal of biological chemistry.
[210] U. Ozcelik,et al. Epidemiology of chronic Pseudomonas aeruginosa infections in cystic fibrosis. , 2001, International journal of medical microbiology : IJMM.
[211] L. Živković,et al. Purification and characterization of an alkaline lipase from Pseudomonas aeruginosa isolated from putrid mineral cutting oil as component of metalworking fluid. , 2006, Journal of bioscience and bioengineering.
[212] Ludwig Triest,et al. Global Pseudomonas aeruginosa biodiversity as reflected in a Belgian river. , 2005, Environmental microbiology.
[213] E. Greenberg,et al. The influence of human respiratory epithelia on Pseudomonas aeruginosa gene expression. , 2007, Microbial pathogenesis.
[214] K. Kogure,et al. Multilocus Sequence Typing and Phylogenetic Analyses of Pseudomonas aeruginosa Isolates from the Ocean , 2008, Applied and Environmental Microbiology.
[215] Thomas Bjarnsholt,et al. Antibiotic resistance of bacterial biofilms. , 2010, International journal of antimicrobial agents.
[216] J. Wiener-Kronish,et al. Single-Nucleotide-Polymorphism Mapping of the Pseudomonas aeruginosa Type III Secretion Toxins for Development of a Diagnostic Multiplex PCR System , 2003, Journal of Clinical Microbiology.
[217] D. M. Ward,et al. The importance of physical isolation to microbial diversification. , 2004, FEMS microbiology ecology.
[218] T. Pitt,et al. The relationship between the O-antigenic lipopolysaccharides and serological specificity in strains of Pseudomonas aeruginosa of different O-serotypes. , 1973, Journal of general microbiology.
[219] Maureen A. O’Malley,et al. Prokaryotic evolution and the tree of life are two different things , 2009, Biology Direct.
[220] Sylvain Moineau,et al. Bacteriophage resistance mechanisms , 2010, Nature Reviews Microbiology.
[221] Pan‐Chyr Yang,et al. Persistence of a Multidrug-ResistantPseudomonas aeruginosa Clone in an Intensive Care Burn Unit , 1998, Journal of Clinical Microbiology.
[222] Bernhard Haubold,et al. LIAN 3.0: detecting linkage disequilibrium in multilocus data , 2000, Bioinform..
[223] R. Colwell,et al. Viable but nonculturable bacteria in drinking water , 1991, Applied and environmental microbiology.
[224] A. Goudeau,et al. Genetic features of Pseudomonas aeruginosa isolates from cystic fibrosis patients compared with those of isolates from other origins. , 2004, Journal of medical microbiology.
[225] D. J. Funk,et al. A conservative test of genetic drift in the endosymbiotic bacterium Buchnera: slightly deleterious mutations in the chaperonin groEL. , 2003, Genetics.
[226] S. McColley,et al. Type III Secretion Phenotypes of Pseudomonas aeruginosa Strains Change during Infection of Individuals with Cystic Fibrosis , 2004, Journal of Clinical Microbiology.
[227] K. Lewis,et al. Riddle of Biofilm Resistance , 2001, Antimicrobial Agents and Chemotherapy.
[228] J. Elion,et al. Genetic heterogeneity of Pseudomonas aeruginosa clinical isolates revealed by esterase electrophoretic polymorphism and restriction fragment length polymorphism of the ribosomal RNA gene region. , 1994, Journal of medical microbiology.
[229] S. Gould. The Structure of Evolutionary Theory , 2002 .
[230] David M. Ward,et al. A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities , 1998, Microbiology and Molecular Biology Reviews.
[231] V. Deretic,et al. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. , 1996, Microbiological reviews.
[232] B. Tümmler,et al. A major Pseudomonas aeruginosa clone common to patients and aquatic habitats , 1994, Applied and environmental microbiology.
[233] M. Fujisawa,et al. Complicated urinary tract infection caused by Pseudomonas aeruginosa in a single institution (1999–2003) , 2006, International journal of urology : official journal of the Japanese Urological Association.
[234] Chanathip Pharino,et al. Genotypic Diversity Within a Natural Coastal Bacterioplankton Population , 2005, Science.
[235] W. Doolittle. Microbial Evolution: Stalking the Wild Bacterial Species , 2008, Current Biology.
[236] J. Rello,et al. Secretion of the toxin ExoU is a marker for highly virulent Pseudomonas aeruginosa isolates obtained from patients with hospital-acquired pneumonia. , 2003, The Journal of infectious diseases.
[237] K. Tait,et al. The interaction of phage and biofilms. , 2004, FEMS microbiology letters.
[238] Martin Schuster,et al. Pseudomonas aeruginosa Biofilms Exposed to Imipenem Exhibit Changes in Global Gene Expression and β-Lactamase and Alginate Production , 2004, Antimicrobial Agents and Chemotherapy.
[239] C. Dowson,et al. Commercial Mushrooms and Bean Sprouts Are a Source of Pseudomonas aeruginosa , 2005, Journal of Clinical Microbiology.
[240] D. van Soolingen,et al. Ecotypes of the Mycobacterium tuberculosis complex. , 2006, Journal of theoretical biology.
[241] Patrick Forterre,et al. The origin of viruses and their possible roles in major evolutionary transitions. , 2006, Virus research.
[242] Christian Weinel,et al. Population structure of Pseudomonas aeruginosa , 2007, Proceedings of the National Academy of Sciences.
[243] D. M. Ward,et al. Geographical isolation in hot spring cyanobacteria. , 2003, Environmental microbiology.
[244] E. Mahenthiralingam,et al. Nonmotility and phagocytic resistance of Pseudomonas aeruginosa isolates from chronically colonized patients with cystic fibrosis , 1994, Infection and immunity.
[245] K. Thiel,et al. China approves first gene therapy , 2004, Nature Biotechnology.
[246] J. Govan,et al. Microbiology of cystic fibrosis lung infections: themes and issues. , 1993, Journal of the Royal Society of Medicine.
[247] F. O'Gara,et al. Genome Diversity of Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients and the Hospital Environment , 2004, Journal of Clinical Microbiology.
[248] J. Mattick,et al. Quorum Sensing Is Not Required for Twitching Motility in Pseudomonas aeruginosa , 2002, Journal of bacteriology.
[249] Hans-Peter Klenk,et al. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison , 2010, Standards in genomic sciences.
[250] G. Fraser,et al. Swarming motility. , 1999, Current opinion in microbiology.
[251] T. Pitt,et al. Widespread pyocyanin over-production among isolates of a cystic fibrosis epidemic strain , 2007, BMC Microbiology.
[252] M. Schroth,et al. Agricultural plants and soil as a reservoir for Pseudomonas aeruginosa. , 1974, Applied microbiology.
[253] E. Mahenthiralingam,et al. Nonopsonic phagocytosis of Pseudomonas aeruginosa by macrophages and polymorphonuclear leukocytes requires the presence of the bacterial flagellum , 1995, Infection and immunity.
[254] M. Hasanuzzaman,et al. Isolation, Identification, and Characterization of a Novel, Oil-Degrading Bacterium, Pseudomonas aeruginosa T1 , 2004, Current Microbiology.
[255] D. Gevers,et al. Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton , 2008, Science.
[256] N. Høiby,et al. Does Centralized Treatment of Cystic Fibrosis Increase the Risk of Pseudomonas aeruginosa Infection? , 1986, Acta paediatrica Scandinavica.
[257] Christophe Fraser,et al. Neutral microepidemic evolution of bacterial pathogens. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[258] D. M. Ward,et al. Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[259] W. Johnson,et al. Environmental gasoline-utilizing isolates and clinical isolates of Pseudomonas aeruginosa are taxonomically indistinguishable by chemotaxonomic and molecular techniques. , 1996, Microbiology.
[260] M. Achtman,et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[261] X. Didelot,et al. A comparison of homologous recombination rates in bacteria and archaea , 2009, The ISME Journal.
[262] D. Hassett,et al. Pseudomonas aeruginosa biofilm infections in cystic fibrosis: insights into pathogenic processes and treatment strategies , 2010, Expert opinion on therapeutic targets.
[263] K. Kogure,et al. Pseudomonas aeruginosa Isolated from Marine Environments in Tokyo Bay , 2003, Microbial Ecology.
[264] Li Li,et al. Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial , 2006, Genome Biology.
[265] E. Greenberg,et al. Identification, Timing, and Signal Specificity of Pseudomonas aeruginosa Quorum-Controlled Genes: a Transcriptome Analysis , 2003, Journal of bacteriology.
[266] J. Sikorski. Populations under microevolutionary scrutiny: what will we gain? , 2007, Archives of Microbiology.
[267] M. Lynch,et al. The Origins of Genome Complexity , 2003, Science.
[268] R. Overbeek,et al. The winds of (evolutionary) change: breathing new life into microbiology. , 1996, Journal of bacteriology.
[269] B. Tümmler,et al. Pseudomonas aeruginosa population biology in chronic obstructive pulmonary disease. , 2009, The Journal of infectious diseases.
[270] U. Römling,et al. Worldwide distribution of Pseudomonas aeruginosa clone C strains in the aquatic environment and cystic fibrosis patients. , 2005, Environmental microbiology.
[271] Giovanna Morelli,et al. Microevolution and history of the plague bacillus, Yersinia pestis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[272] H. Kida,et al. Isolation of Pseudomonas aeruginosa from Ushubetsu River water in Hokkaido, Japan. , 2000, The Japanese journal of veterinary research.
[273] S. Lory,et al. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen , 2000, Nature.
[274] M. Kimura. Evolutionary Rate at the Molecular Level , 1968, Nature.
[275] J. Costerton,et al. Microbial Biofilms , 2011 .
[276] L. Excoffier,et al. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. , 1992, Genetics.
[277] J. Costerton,et al. Bacterial biofilms: a common cause of persistent infections. , 1999, Science.
[278] J. Costerton,et al. Biofilms as complex differentiated communities. , 2002, Annual review of microbiology.
[279] M. Busquets,et al. Screening and production of rhamnolipids by Pseudomonas aeruginosa 47T2 NCIB 40044 from waste frying oils , 2000, Journal of applied microbiology.
[280] Todd H. Oakley,et al. The new biology: beyond the Modern Synthesis , 2007, Biology Direct.
[281] T. Pitt,et al. Auxotrophic variants of Pseudomonas aeruginosa are selected from prototrophic wild-type strains in respiratory infections in patients with cystic fibrosis , 1995, Journal of clinical microbiology.