High-Throughput Approaches for the Discovery of Supramolecular Organic Cages.

The assembly of complex molecules, such as organic cages, can be achieved through supramolecular and dynamic covalent strategies. Their use in a range of applications has been demonstrated, including gas uptake, molecular separations, and in catalysis. However, the targeted design and synthesis of new species for particular applications is challenging, particularly as the systems become more complex. High-throughput computation-only and experiment-only approaches have been developed to streamline the discovery process, although are still not widely implemented. Additionally, combined hybrid workflows can dramatically accelerate the discovery process and lead to the serendipitous discovery and rationalisation of new supramolecular assemblies that would not have been designed based on intuition alone. This Minireview focuses on the advances in high-throughput approaches that have been developed and applied in the discovery of supramolecular organic cages.

[1]  Gang Zhang,et al.  Organic cage compounds--from shape-persistency to function. , 2014, Chemical Society reviews.

[2]  Michael J. Bennison,et al.  High-throughput discovery of organic cages and catenanes using computational screening fused with robotic synthesis , 2018, Nature Communications.

[3]  Jie Yu,et al.  Solar fuels photoanode materials discovery by integrating high-throughput theory and experiment , 2017, Proceedings of the National Academy of Sciences.

[4]  K. Jelfs,et al.  Topological landscapes of porous organic cages. , 2017, Nanoscale.

[5]  Krishna Rajan,et al.  Combinatorial and high-throughput screening of materials libraries: review of state of the art. , 2011, ACS combinatorial science.

[6]  G. Day,et al.  Application of computational methods to the design and characterisation of porous molecular materials. , 2017, Chemical Society reviews.

[7]  David A. Leigh,et al.  Catenane: fünfzig Jahre molekulare Verschlingungen , 2015 .

[8]  Edward O. Pyzer-Knapp,et al.  Controlling the crystallization of porous organic cages: molecular analogs of isoreticular frameworks using shape-specific directing solvents. , 2014, Journal of the American Chemical Society.

[9]  Kim E Jelfs,et al.  pywindow: Automated Structural Analysis of Molecular Pores , 2018, J. Chem. Inf. Model..

[10]  R. Scopelliti,et al.  Synthesis of molecular nanostructures by multicomponent condensation reactions in a ball mill. , 2009, Journal of the American Chemical Society.

[11]  L. Cronin,et al.  An Autonomous Chemical Robot Discovers the Rules of Inorganic Coordination Chemistry without Prior Knowledge , 2020, Angewandte Chemie.

[12]  Lukas Turcani,et al.  stk: A python toolkit for supramolecular assembly , 2018, J. Comput. Chem..

[13]  A. Slawin,et al.  Porous organic cages. , 2009, Nature materials.

[14]  Accelerated robotic discovery of type II porous liquids† †Electronic supplementary information (ESI) available: Detailed synthetic procedures, experimental details and measurements (PDF). See DOI: 10.1039/c9sc03316e. , 2019, Chemical science.

[15]  Martin D. Burke,et al.  Synthesis of many different types of organic small molecules using one automated process , 2015, Science.

[16]  B. Alston,et al.  Computationally-Guided Synthetic Control over Pore Size in Isostructural Porous Organic Cages , 2017, ACS central science.

[17]  Florian Beuerle,et al.  Kovalente organische Netzwerke und Käfigverbindungen: Design und Anwendungen von polymeren und diskreten organischen Gerüsten , 2018 .

[18]  Iris M. Oppel,et al.  A shape-persistent quadruply interlocked giant cage catenane with two distinct pores in the solid state. , 2014, Angewandte Chemie.

[19]  A. Cooper,et al.  Large self-assembled chiral organic cages: synthesis, structure, and shape persistence. , 2011, Angewandte Chemie.

[20]  Chinmay A Shukla,et al.  Automating multistep flow synthesis: approach and challenges in integrating chemistry, machines and logic , 2017, Beilstein journal of organic chemistry.

[21]  Jonathan Grizou,et al.  Human versus Robots in the Discovery and Crystallization of Gigantic Polyoxometalates , 2017, Angewandte Chemie.

[22]  A. Cooper,et al.  Porous Organic Cage Thin Films and Molecular‐Sieving Membranes , 2016, Advanced materials.

[23]  Leroy Cronin,et al.  Organic synthesis in a modular robotic system driven by a chemical programming language , 2019, Science.

[24]  Michael J. Bennison,et al.  Computationally-inspired discovery of an unsymmetrical porous organic cage. , 2018, Nanoscale.

[25]  Takashi Kumasaka,et al.  Self-assembly of tetravalent Goldberg polyhedra from 144 small components , 2016, Nature.

[26]  R. B. Merrifield Automated synthesis of peptides. , 1965, Science.

[27]  Rebecca L. Greenaway,et al.  Liquids with permanent porosity , 2015, Nature.

[28]  Christopher K Prier,et al.  Discovery of an α-Amino C–H Arylation Reaction Using the Strategy of Accelerated Serendipity , 2011, Science.

[29]  John F. Hartwig,et al.  A Simple, Multidimensional Approach to High-Throughput Discovery of Catalytic Reactions , 2011, Science.

[30]  Oliver Throl,et al.  High-throughput screening: speeding up porous materials discovery. , 2011, Chemical communications.

[31]  Ryan P. Lively,et al.  Formation Mechanisms and Defect Engineering of Imine-based Porous Organic Cages , 2018 .

[32]  J. Gregoire,et al.  Progress and prospects for accelerating materials science with automated and autonomous workflows , 2019, Chemical science.

[33]  R. Clowes,et al.  Synthesis of a Large, Shape-Flexible, Solvatomorphic Porous Organic Cage , 2019, Crystal growth & design.

[34]  P. Mandal,et al.  Accelerated discovery of two crystal structure types in a complex inorganic phase field , 2017, Nature.

[35]  Yongchul G. Chung,et al.  High-Throughput Screening of Metal-Organic Frameworks for CO2 Capture in the Presence of Water. , 2016, Langmuir : the ACS journal of surfaces and colloids.

[36]  M. Caruthers,et al.  Gene synthesis machines: DNA chemistry and its uses. , 1985, Science.

[37]  Rebecca L. Greenaway,et al.  From Concept to Crystals via Prediction: Multi-Component Organic Cage Pots by Social Self-Sorting. , 2019, Angewandte Chemie.

[38]  A. Cooper,et al.  Porous organic molecular solids by dynamic covalent scrambling. , 2011, Nature communications.

[39]  P. Mukherjee,et al.  A fluorescent organic cage for picric acid detection. , 2014, Chemical communications.

[40]  F. Krebs,et al.  Mechanical Properties of a Library of Low-Band-Gap Polymers , 2016 .

[41]  Florian Beuerle,et al.  Covalent Organic Frameworks and Cage Compounds: Design and Applications of Polymeric and Discrete Organic Scaffolds. , 2018, Angewandte Chemie.

[42]  Michael P. Marshak,et al.  Computational design of molecules for an all-quinone redox flow battery , 2014, Chemical science.

[43]  Peter H. Seeberger,et al.  Automated Solid-Phase Synthesis of Oligosaccharides , 2001, Science.

[44]  Andrew I. Cooper,et al.  Functional materials discovery using energy–structure–function maps , 2017, Nature.

[45]  Marco Buongiorno Nardelli,et al.  The high-throughput highway to computational materials design. , 2013, Nature materials.

[46]  Rebecca L. Greenaway,et al.  Dynamic flow synthesis of porous organic cages. , 2015, Chemical communications.

[47]  Siva Krishna Mohan Nalluri,et al.  Surveying macrocyclic chemistry: from flexible crown ethers to rigid cyclophanes. , 2017, Chemical Society reviews.

[48]  R. Clowes,et al.  Computational Screening of Porous Organic Molecules for Xenon/Krypton Separation , 2017 .

[49]  David A Leigh,et al.  Catenanes: Fifty Years of Molecular Links , 2015, Angewandte Chemie.

[50]  Qilei Song,et al.  Computational Evaluation of the Diffusion Mechanisms for C8 Aromatics in Porous Organic Cages , 2019, The Journal of Physical Chemistry C.

[51]  A. Cooper,et al.  Separation of rare gases and chiral molecules by selective binding in porous organic cages. , 2014, Nature materials.

[52]  A. Cooper,et al.  Gas Diffusion in a Porous Organic Cage: Analysis of Dynamic Pore Connectivity Using Molecular Dynamics Simulations , 2014 .

[53]  Klavs F Jensen,et al.  Reconfigurable system for automated optimization of diverse chemical reactions , 2018, Science.

[54]  Alfred Ludwig,et al.  Discovery of new materials using combinatorial synthesis and high-throughput characterization of thin-film materials libraries combined with computational methods , 2019, npj Computational Materials.

[55]  Lukas Turcani,et al.  Machine Learning for Organic Cage Property Prediction , 2019 .

[56]  Leroy Cronin,et al.  Towards dial-a-molecule by integrating continuous flow, analytics and self-optimisation. , 2016, Chemical Society reviews.

[57]  A. Cooper,et al.  Porous Organic Cages for Gas Chromatography Separations , 2015 .

[58]  Li-Chiang Lin,et al.  High-throughput computational screening of nanoporous adsorbents for CO2 capture from natural gas , 2016 .

[59]  Michael O'Keeffe,et al.  High-Throughput Synthesis of Zeolitic Imidazolate Frameworks and Application to CO2 Capture , 2008, Science.

[60]  M. Haranczyk,et al.  In silico design and assembly of cage molecules into porous molecular materials , 2018 .

[61]  K. A. Brown,et al.  High-throughput synthesis and characterization of nanocrystalline porphyrinic zirconium metal-organic frameworks. , 2016, Chemical communications.

[62]  K. Jelfs,et al.  Predicting solvent effects on the structure of porous organic molecules. , 2015, Chemical communications.

[63]  Reiner Sebastian Sprick,et al.  Accelerated Discovery of Organic Polymer Photocatalysts for Hydrogen Evolution from Water through the Integration of Experiment and Theory , 2019, Journal of the American Chemical Society.

[64]  M. Carreon,et al.  Microwave-assisted synthesis of porous organic cages CC3 and CC2 , 2019, CrystEngComm.

[65]  A. Cooper,et al.  Modular and predictable assembly of porous organic molecular crystals , 2011, Nature.

[66]  Tom O. McDonald,et al.  Dynamic nuclear polarization NMR spectroscopy allows high-throughput characterization of microporous organic polymers. , 2013, Journal of the American Chemical Society.

[67]  A. Cooper,et al.  A Perspective on the Synthesis, Purification, and Characterization of Porous Organic Cages , 2016, Chemistry of materials : a publication of the American Chemical Society.

[68]  N. Iwasawa,et al.  Dynamic Behavior of Covalent Organic Cages. , 2018, Chemistry.

[69]  Rebecca L. Greenaway,et al.  Computational screening for nested organic cage complexes , 2019, Molecular Systems Design & Engineering.

[70]  I. Vitorica-Yrezabal,et al.  Braiding a molecular knot with eight crossings , 2017, Science.

[72]  A. Cooper,et al.  Organic Cage Dumbbells. , 2020, Chemistry.

[73]  A. Cooper,et al.  Porous organic cages: soluble, modular and molecular pores , 2016 .

[74]  R. Clowes,et al.  Reticular synthesis of porous molecular 1D nanotubes and 3D networks. , 2017, Nature chemistry.

[75]  François-Xavier Coudert,et al.  Recent advances in the computational chemistry of soft porous crystals. , 2017, Chemical communications.